Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0278561 Rosa chinensis HOM05D001129 ORTHO05D003814 6.5e-44 180.3 86 100.0
RcHm_v2.0_Chr2g0132461 Rosa chinensis HOM05D001129 ORTHO05D003814 4.2e-35 151.0 78 91.0
RcHm_v2.0_Chr5g0072781 Rosa chinensis HOM05D001129 ORTHO05D003814 2.4e-22 108.6 56 91.1
Prupe.6G041800 Prunus persica HOM05D001129 ORTHO05D003814 2.0e-21 105.5 56 87.5
RcHm_v2.0_Chr5g0073051 Rosa chinensis HOM05D001129 ORTHO05D003814 7.7e-21 103.6 56 87.5
RcHm_v2.0_Chr7g0202261 Rosa chinensis HOM05D001129 ORTHO05D003814 2.9e-20 101.7 56 85.7
FAN11G2940 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.8e-20 101.3 57 86.0
FAN16G0023 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.8e-20 101.3 57 86.0
MD03G1052300 Malus domestica HOM05D001129 ORTHO05D003814 6.5e-20 100.5 56 82.1
MD11G1054400 Malus domestica HOM05D001129 ORTHO05D003814 6.5e-20 100.5 56 82.1
FvH4_3g40361 Fragaria vesca HOM05D001129 ORTHO05D003814 1.1e-19 99.8 57 84.2
FvH4_5g00310 Fragaria vesca HOM05D001129 ORTHO05D003814 1.1e-19 99.8 56 82.1
FAN08G0077 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.1e-19 99.8 56 82.1
FAN18G3567 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.1e-19 99.8 56 82.1
Cfa011826 Carpinus fangiana HOM05D001129 ORTHO05D003814 1.9e-19 99.0 56 83.9
RcHm_v2.0_Chr5g0073061 Rosa chinensis HOM05D001129 ORTHO05D003814 2.5e-19 98.6 56 83.9
QL01p024916 Quercus lobata HOM05D001129 ORTHO05D003814 3.2e-19 98.2 56 80.4
FvH4_3g40370 Fragaria vesca HOM05D001129 ORTHO05D003814 4.2e-19 97.8 56 82.1
CiPaw.13G064200 Carya illinoinensis HOM05D001129 ORTHO05D003814 5.5e-19 97.4 56 83.9
FvH4_3g40410 Fragaria vesca HOM05D001129 ORTHO05D003814 9.4e-19 96.7 56 80.4
RcHm_v2.0_Chr5g0072951 Rosa chinensis HOM05D001129 ORTHO05D003814 9.4e-19 96.7 56 78.6
FAN04G0733 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.2e-18 96.3 56 80.4
RcHm_v2.0_Chr1g0333871 Rosa chinensis HOM05D001129 ORTHO05D003814 1.6e-18 95.9 78 65.4
CANSAT54G2955 Cannabis sativa HOM05D001129 ORTHO05D003814 2.1e-18 95.5 56 82.1
FAN11G2052 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.6e-18 94.7 56 76.8
FAN16G3400 Fragaria x ananassa HOM05D001129 ORTHO05D003814 3.6e-18 94.7 56 76.8
RcHm_v2.0_Chr5g0073041 Rosa chinensis HOM05D001129 ORTHO05D003814 3.6e-18 94.7 56 76.8
Ca_15041_v3 Cicer arietinum L. HOM05D001129 ORTHO05D003814 8.0e-18 93.6 56 78.6
Medtr3g466820 Medicago truncatula HOM05D001129 ORTHO05D003814 1.4e-17 92.8 56 76.8
Prupe.6G041900 Prunus persica HOM05D001129 ORTHO05D003814 1.4e-17 92.8 55 76.4
TPR.G27384 Trifolium pratense HOM05D001129 ORTHO05D003814 1.4e-17 92.8 56 76.8
Lj6g0006618 Lotus japonicus HOM05D001129 ORTHO05D003814 1.8e-17 92.4 56 76.8
Psat5g149400 Pisum sativum HOM05D001129 ORTHO05D003814 2.3e-17 92.0 56 75.0
RcHm_v2.0_Chr5g0072931 Rosa chinensis HOM05D001129 ORTHO05D003814 2.3e-17 92.0 56 78.6
Manes.02G208660 Manihot esculenta HOM05D001129 ORTHO05D003814 3.0e-17 91.7 56 73.2
arahy.Tifrunner.gnm1.ann1.1AE9PZ Arachis hypogaea HOM05D001129 ORTHO05D003814 4.0e-17 91.3 56 76.8
arahy.Tifrunner.gnm1.ann1.HA8THR Arachis hypogaea HOM05D001129 ORTHO05D003814 4.0e-17 91.3 56 76.8
Lalb_Chr18g0054261 Lupinus albus HOM05D001129 ORTHO05D003814 4.0e-17 91.3 56 75.0
AUR62036212 Chenopodium quinoa HOM05D001129 ORTHO05D003814 6.8e-17 90.5 56 75.0
THA.LOC104800786 Tarenaya hassleriana HOM05D001129 ORTHO05D003814 6.8e-17 90.5 56 75.0
Hma1.2p1_0170F.1_g075000 Hydrangea macrophylla HOM05D001129 ORTHO05D003814 1.2e-16 89.7 56 78.6
AUR62009732 Chenopodium quinoa HOM05D001129 ORTHO05D003814 2.6e-16 88.6 56 73.2
Dinv28728 Davidia involucrata HOM05D001129 ORTHO05D003814 3.4e-16 88.2 56 76.8
RcHm_v2.0_Chr1g0322391 Rosa chinensis HOM05D001129 ORTHO05D003814 3.4e-16 88.2 48 83.3
RcHm_v2.0_Chr1g0333061 Rosa chinensis HOM05D001129 ORTHO05D003814 4.4e-16 87.8 49 81.6
GSVIVG01024571001 Vitis vinifera HOM05D001129 ORTHO05D003814 5.7e-16 87.4 56 76.8
Lj4g0007497 Lotus japonicus HOM05D001129 ORTHO05D003814 7.5e-16 87.0 56 69.6
Nn2g10322 Nelumbo nucifera HOM05D001129 ORTHO05D003814 7.5e-16 87.0 56 67.9
FAN21G2900 Fragaria x ananassa HOM05D001129 ORTHO05D003814 9.8e-16 86.7 65 64.6
Rhsim13G0059900 Rhododendron simsii HOM05D001129 ORTHO05D003814 9.8e-16 86.7 56 73.2
FAN13G0243 Fragaria x ananassa HOM05D001129 ORTHO05D003814 1.3e-15 86.3 48 81.2
Gohir.D09G013866 Gossypium hirsutum HOM05D001129 ORTHO05D003814 1.7e-15 85.9 56 69.6
Gohir.D09G051901 Gossypium hirsutum HOM05D001129 ORTHO05D003814 1.7e-15 85.9 56 69.6
Gorai.007G260700 Gossypium raimondii HOM05D001129 ORTHO05D003814 1.7e-15 85.9 56 69.6
Gorai.009G402100 Gossypium raimondii HOM05D001129 ORTHO05D003814 1.7e-15 85.9 56 69.6
Peaxi162Scf00960g00120 Petunia axillaris HOM05D001129 ORTHO05D003814 1.7e-15 85.9 56 71.4
TWI79G0222 Tripterygium wilfordii HOM05D001129 ORTHO05D003814 1.7e-15 85.9 56 75.0
Lj2C1101T10 Lonicera japonica HOM05D001129 ORTHO05D003814 2.2e-15 85.5 56 71.4
Potri.013G154600 Populus trichocarpa HOM05D001129 ORTHO05D003814 2.2e-15 85.5 56 71.4
Sabra13G0124500 Salix brachista HOM05D001129 ORTHO05D003814 2.2e-15 85.5 56 71.4
AL1G16920 Arabidopsis lyrata HOM05D001129 ORTHO05D003814 2.8e-15 85.1 56 69.6
AT1G06900 Arabidopsis thaliana HOM05D001129 ORTHO05D003814 2.8e-15 85.1 56 69.6
TAR623G0919 Trochodendron aralioides HOM05D001129 ORTHO05D003814 2.8e-15 85.1 56 69.6
Carub.0001s0619 Capsella rubella HOM05D001129 ORTHO05D003814 3.7e-15 84.7 56 69.6
Nitab4.5_0002620g0020 Nicotiana tabacum HOM05D001129 ORTHO05D003814 3.7e-15 84.7 56 69.6
EL10Ac7g15852 Beta vulgaris HOM05D001129 ORTHO05D003814 6.3e-15 84.0 56 69.6
CSS0010940 Camellia sinensis var. sinensis HOM05D001129 ORTHO05D003814 6.3e-15 84.0 56 69.6
Eucgr.B04025 Eucalyptus grandis HOM05D001129 ORTHO05D003814 6.3e-15 84.0 56 71.4
Gorai.009G417200 Gossypium raimondii HOM05D001129 ORTHO05D003814 6.3e-15 84.0 57 68.4
Nitab4.5_0000002g0190 Nicotiana tabacum HOM05D001129 ORTHO05D003814 6.3e-15 84.0 56 69.6
Sp1g05610 Schrenkiella parvula HOM05D001129 ORTHO05D003814 6.3e-15 84.0 56 67.9
COL.COLO4_11207 Corchorus olitorius HOM05D001129 ORTHO05D003814 8.3e-15 83.6 56 67.9
Duzib168G0079 Durio zibethinus HOM05D001129 ORTHO05D003814 8.3e-15 83.6 56 67.9
FAN11G1991 Fragaria x ananassa HOM05D001129 ORTHO05D003814 8.3e-15 83.6 49 71.4
Gohir.D03G145400 Gossypium hirsutum HOM05D001129 ORTHO05D003814 8.3e-15 83.6 56 67.9
Gohir.D11G291701 Gossypium hirsutum HOM05D001129 ORTHO05D015145 8.3e-15 83.6 56 67.9
Gorai.003G152500 Gossypium raimondii HOM05D001129 ORTHO05D003814 8.3e-15 83.6 56 67.9
VMungo0540G0021 Vigna mungo HOM05D001129 ORTHO05D003814 8.3e-15 83.6 56 73.2
CAN.G3.33 Capsicum annuum HOM05D001129 ORTHO05D003814 1.1e-14 83.2 56 69.6
CARHR006570 Cardamine hirsuta HOM05D001129 ORTHO05D003814 1.1e-14 83.2 56 69.6
Glyma.18G053700 Glycine max HOM05D001129 ORTHO05D003814 1.1e-14 83.2 56 73.2
Phvul.006G077500 Phaseolus vulgaris HOM05D001129 ORTHO05D003814 1.1e-14 83.2 56 73.2
PGR102G0317 Punica granatum HOM05D001129 ORTHO05D003814 1.1e-14 83.2 56 71.4
Solyc02g043860.3 Solanum lycopersicum HOM05D001129 ORTHO05D003814 1.4e-14 82.8 56 69.6
Actinidia11622 Actinidia chinensis HOM05D001129 ORTHO05D003814 1.8e-14 82.4 56 75.0
BcaC07g42040 Brassica carinata HOM05D001129 ORTHO05D003814 1.8e-14 82.4 56 67.9
C08p50940 Brassica napus HOM05D001129 ORTHO05D003814 1.8e-14 82.4 56 67.9
BolC8t52622H Brassica oleracea HOM05D001129 ORTHO05D003814 1.8e-14 82.4 56 67.9
Sed0019452 Sechium edule HOM05D001129 ORTHO05D003814 1.8e-14 82.4 56 69.6
BcaC07g42543 Brassica carinata HOM05D001129 ORTHO05D003814 3.1e-14 81.6 56 66.1
Glyma.11G160300 Glycine max HOM05D001129 ORTHO05D003814 3.1e-14 81.6 56 71.4
Aa31LG1G7970 Aethionema arabicum HOM05D001129 ORTHO05D003814 4.1e-14 81.3 56 66.1
Cpa.g.sc2.305 Carica papaya HOM05D001129 ORTHO05D003814 4.1e-14 81.3 49 73.5
Ciclev10000133m.g Citrus clementina HOM05D001129 ORTHO05D003814 4.1e-14 81.3 56 66.1
A08p35850 Brassica napus HOM05D001129 ORTHO05D003814 5.4e-14 80.9 56 66.1
C08p02730 Brassica napus HOM05D001129 ORTHO05D003814 5.4e-14 80.9 56 66.1
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 5.4e-14 80.9 56 66.1
FvH4_3g41040 Fragaria vesca HOM05D001129 ORTHO05D003814 5.4e-14 80.9 47 72.3
Gohir.A03G023300 Gossypium hirsutum HOM05D001129 ORTHO05D003814 5.4e-14 80.9 56 66.1
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 7.0e-14 80.5 56 64.3
BraA08t35492Z Brassica rapa HOM05D001129 ORTHO05D003814 7.0e-14 80.5 56 66.1
Hund05051 Selenicereus undatus HOM05D001129 ORTHO05D003814 7.0e-14 80.5 56 67.9
Sopen02g007490 Solanum pennellii HOM05D001129 ORTHO05D003814 7.0e-14 80.5 56 67.9
Gohir.D07G130166 Gossypium hirsutum HOM05D001129 ORTHO05D003814 9.1e-14 80.1 56 66.1
Gorai.001G201100 Gossypium raimondii HOM05D001129 ORTHO05D003814 9.1e-14 80.1 58 65.5
Oeu015569.1 Olea europaea HOM05D001129 ORTHO05D003814 9.1e-14 80.1 56 71.4
TAR369G1057 Trochodendron aralioides HOM05D001129 ORTHO05D003814 1.2e-13 79.7 56 64.3
Aqoxy2G00701 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 1.6e-13 79.3 56 67.9
vmacro02881 Vaccinium macrocarpon HOM05D001129 ORTHO05D003814 1.6e-13 79.3 51 68.6
BcaB02g06767 Brassica carinata HOM05D001129 ORTHO05D003814 2.0e-13 79.0 56 62.5
BcaC05g24658 Brassica carinata HOM05D001129 ORTHO05D003814 2.0e-13 79.0 56 62.5
A10p05450 Brassica napus HOM05D001129 ORTHO05D003814 2.0e-13 79.0 56 62.5
BolC5t29275H Brassica oleracea HOM05D001129 ORTHO05D003814 2.0e-13 79.0 56 62.5
BraA10t42809Z Brassica rapa HOM05D001129 ORTHO05D003814 2.0e-13 79.0 56 62.5
Cc01_g15280 Coffea canephora HOM05D001129 ORTHO05D003814 2.0e-13 79.0 56 73.2
Thhalv10006660m.g Eutrema salsugineum HOM05D001129 ORTHO05D003814 2.0e-13 79.0 56 64.3
CsaV3_6G019170 Cucumis sativus L. HOM05D001129 ORTHO05D003814 2.7e-13 78.6 56 64.3
SalBow1G3107 Salvia bowleyana HOM05D001129 ORTHO05D003814 7.7e-13 77.0 56 66.1
Atru.chr1.2504 Acer truncatum HOM05D001129 ORTHO05D003814 1.0e-12 76.6 56 64.3
PSO339G0703 Papaver somniferum HOM05D001129 ORTHO05D003814 1.0e-12 76.6 56 60.7
SGA_v2.0_scaffold20G09290 Striga asiatica HOM05D001129 ORTHO05D003814 1.0e-12 76.6 56 67.9
Aqoxy5G03056 Aquilegia oxysepala HOM05D001129 ORTHO05D003814 1.3e-12 76.3 56 60.7
Thecc.09G363300 Theobroma cacao HOM05D001129 ORTHO05D003814 1.3e-12 76.3 56 62.5
Sc06g0008100 Simmondsia chinensis HOM05D001129 ORTHO05D003814 1.7e-12 75.9 56 64.3
COL.COLO4_06002 Corchorus olitorius HOM05D001129 ORTHO05D015438 2.3e-12 75.5 48 70.8
Gorai.006G004900 Gossypium raimondii HOM05D001129 ORTHO05D003814 2.3e-12 75.5 56 60.7
MSTRG.18541 Avicennia marina HOM05D001129 ORTHO05D003814 2.9e-12 75.1 56 66.1
PSO384G2839 Papaver somniferum HOM05D001129 ORTHO05D003814 2.9e-12 75.1 56 58.9
ATR1127G095 Amborella trichopoda HOM05D001129 ORTHO05D003814 3.8e-12 74.7 56 64.3
Migut.D00820 Erythranthe guttata HOM05D001129 ORTHO05D003814 3.8e-12 74.7 56 64.3
HPP92_006788 Vanilla planifolia HOM05D001129 ORTHO05D003814 5.0e-12 74.3 56 62.5
HPP92_028209 Vanilla planifolia HOM05D001129 ORTHO05D003814 5.0e-12 74.3 56 62.5
MELO3C026877.2 Cucumis melo HOM05D001129 ORTHO05D003814 8.6e-12 73.6 56 60.7
Lsat_1_v5_gn_9_13880 Lactuca sativa HOM05D001129 ORTHO05D003814 2.5e-11 72.0 56 60.7
Os03g0336300 Oryza sativa ssp. japonica HOM05D001129 ORTHO05D003814 3.3e-11 71.6 56 53.6
DCAR_004800 Daucus carota HOM05D001129 ORTHO05D003814 4.2e-11 71.2 56 58.9
ECA247G0660 Erigeron canadensis HOM05D001129 ORTHO05D003814 4.2e-11 71.2 58 56.9
HanXRQChr08g0230671 Helianthus annuus HOM05D001129 ORTHO05D003814 4.2e-11 71.2 56 60.7
CDE06G0445 Ceratophyllum demersum HOM05D001129 ORTHO05D000075 7.2e-11 70.5 57 66.7
Zm00001eb395090 Zea mays HOM05D001129 ORTHO05D003814 7.2e-11 70.5 56 53.6
ECA247G0490 Erigeron canadensis HOM05D001129 ORTHO05D003814 9.5e-11 70.1 56 62.5
unitig_747.g21448 Utricularia gibba HOM05D001129 ORTHO05D003814 1.6e-10 69.3 56 60.7
FvH4_3g40413 Fragaria vesca HOM05D001129 ORTHO05D003814 3.6e-10 68.2 67 58.2
SEGI_13924 Sequoiadendron giganteum HOM05D001129 ORTHO05D003814 8.0e-10 67.0 56 48.2
AagrBONN_evm.TU.Sc2ySwM_362.374 Anthoceros agrestis HOM05D001129 ORTHO05D003814 1.8e-09 65.9 55 50.9
ClCG02G019050 Citrullus lanatus HOM05D001129 ORTHO05D003814 3.0e-09 65.1 48 60.4
Pp3c5_6610 Physcomitrium patens HOM05D001129 ORTHO05D003814 4.0e-09 64.7 55 49.1
RcHm_v2.0_Chr5g0073071 Rosa chinensis HOM05D001129 ORTHO05D003814 4.0e-09 64.7 56 62.5
SMO239G0088 Selaginella moellendorffii HOM05D001129 ORTHO05D003814 1.2e-08 63.2 55 52.7
Gohir.D08G133750 Gossypium hirsutum HOM05D001129 ORTHO05D003814 2.6e-08 62.0 41 63.4
Mapoly0029s0118 Marchantia polymorpha HOM05D001129 ORTHO05D003814 5.7e-08 60.8 55 47.3
Gorai.011G096400 Gossypium raimondii HOM05D001129 ORTHO05D003814 6.3e-07 57.4 50 50.0
CBR_g27959 Chara braunii HOM05D001129 ORTHO05D003814 1.4e-06 56.2 77 40.3
CBR_g45246 Chara braunii HOM05D001129 ORTHO05D003814 1.4e-06 56.2 77 40.3
Pp3c1_4220 Physcomitrium patens HOM05D001129 ORTHO05D003814 3.1e-06 55.1 52 46.2
CBR_g49619 Chara braunii HOM05D001129 ORTHO05D003814 5.4e-06 54.3 57 50.9


User provided reference genes

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