Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0276321 Rosa chinensis HOM05D003818 ORTHO05D004541 1.7e-73 279.3 142 100.0
FvH4_2g14180 Fragaria vesca HOM05D003818 ORTHO05D004541 1.0e-70 270.0 143 96.5
FAN24G1752 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.0e-70 270.0 143 96.5
FAN15G1651 Fragaria x ananassa HOM05D003818 ORTHO05D004541 1.3e-70 269.6 143 96.5
FAN27G0424 Fragaria x ananassa HOM05D003818 ORTHO05D004541 3.0e-70 268.5 143 95.8
Prupe.3G134400 Prunus persica HOM05D003818 ORTHO05D004541 9.0e-67 256.9 145 91.0
VMungo0720G0479 Vigna mungo HOM05D001872 ORTHO05D001859 1.0e-65 253.4 140 91.4
Manes.06G144400 Manihot esculenta HOM05D003818 ORTHO05D004541 1.3e-65 253.1 144 88.9
MD17G1234800 Malus domestica HOM05D003818 ORTHO05D004541 2.2e-65 252.3 145 89.7
Phvul.007G009900 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 6.5e-65 250.8 140 89.3
Potri.015G138800 Populus trichocarpa HOM05D003818 ORTHO05D004541 7.1e-64 247.3 144 86.8
Sabra15G0149800 Salix brachista HOM05D003818 ORTHO05D004541 7.1e-64 247.3 144 86.8
Glyma.10G238600 Glycine max HOM05D003818 ORTHO05D004541 1.2e-63 246.5 143 86.7
Potri.012G136900 Populus trichocarpa HOM05D003818 ORTHO05D004541 1.2e-63 246.5 144 87.5
Manes.14G028600 Manihot esculenta HOM05D003818 ORTHO05D004541 3.5e-63 245.0 144 86.1
Cpa.g.sc370.10 Carica papaya HOM05D003818 ORTHO05D004541 7.9e-63 243.8 144 86.1
Glyma.20G155900 Glycine max HOM05D003818 ORTHO05D004541 7.9e-63 243.8 143 85.3
arahy.Tifrunner.gnm1.ann1.7N83Z4 Arachis hypogaea HOM05D003818 ORTHO05D004541 1.0e-62 243.4 142 85.2
arahy.Tifrunner.gnm1.ann1.Y3E72Q Arachis hypogaea HOM05D003818 ORTHO05D004541 1.0e-62 243.4 142 85.2
Medtr0019s0160 Medicago truncatula HOM05D003818 ORTHO05D004541 2.3e-62 242.3 145 84.1
MD12G1011200 Malus domestica HOM05D003818 ORTHO05D004541 3.0e-62 241.9 146 86.3
Sed0011620 Sechium edule HOM05D003818 ORTHO05D004541 6.7e-62 240.7 142 85.9
VMungo0720G0599 Vigna mungo HOM05D003818 ORTHO05D004541 8.7e-62 240.4 143 86.0
Lalb_Chr21g0304961 Lupinus albus HOM05D003818 ORTHO05D004541 1.9e-61 239.2 144 83.3
GSVIVG01020800001 Vitis vinifera HOM05D003818 ORTHO05D004541 1.9e-61 239.2 143 88.1
Phvul.007G066800 Phaseolus vulgaris HOM05D003818 ORTHO05D004541 3.3e-61 238.4 143 84.6
CsaV3_3G016860 Cucumis sativus L. HOM05D003818 ORTHO05D004541 4.3e-61 238.0 142 83.1
TWI23G0179 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 5.7e-61 237.7 144 84.0
TWI39G1222 Tripterygium wilfordii HOM05D003818 ORTHO05D004541 5.7e-61 237.7 144 84.7
Sed0012084 Sechium edule HOM05D003818 ORTHO05D004541 7.4e-61 237.3 142 84.5
Thhalv10027983m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 9.7e-61 236.9 145 84.1
BcaB06g27416 Brassica carinata HOM05D003818 ORTHO05D004541 1.6e-60 236.1 145 83.4
Eucgr.H00421 Eucalyptus grandis HOM05D003818 ORTHO05D004541 2.1e-60 235.7 143 85.3
Nn3g21139 Nelumbo nucifera HOM05D003818 ORTHO05D004541 2.1e-60 235.7 145 84.1
QL06p049138 Quercus lobata HOM05D003818 ORTHO05D004541 2.1e-60 235.7 142 84.5
Sabra12G0102700 Salix brachista HOM05D003818 ORTHO05D004541 2.1e-60 235.7 157 79.0
AL3G42280 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 3.7e-60 235.0 145 83.4
A04p12880 Brassica napus HOM05D003818 ORTHO05D004541 4.8e-60 234.6 145 82.8
Lj2g0002682 Lotus japonicus HOM05D003818 ORTHO05D004541 4.8e-60 234.6 145 81.4
TAR374G0305 Trochodendron aralioides HOM05D003818 ORTHO05D004541 4.8e-60 234.6 143 84.6
C04p46580 Brassica napus HOM05D003818 ORTHO05D004541 6.3e-60 234.2 145 82.8
CiPaw.04G066900 Carya illinoinensis HOM05D003818 ORTHO05D004541 6.3e-60 234.2 144 84.0
LjContig00564g0007738 Lotus japonicus HOM05D003818 ORTHO05D004541 6.3e-60 234.2 144 81.9
PGR102G2559 Punica granatum HOM05D003818 ORTHO05D004541 6.3e-60 234.2 145 82.1
AL8G26260 Arabidopsis lyrata HOM05D003818 ORTHO05D004541 8.2e-60 233.8 145 82.8
BraA04t16951Z Brassica rapa HOM05D003818 ORTHO05D004541 8.2e-60 233.8 145 82.8
Haze_13747 Corylus avellana HOM05D003818 ORTHO05D004541 8.2e-60 233.8 134 87.3
TPR.G3844 Trifolium pratense HOM05D003818 ORTHO05D004541 8.2e-60 233.8 144 84.7
Cfa020017 Carpinus fangiana HOM05D003818 ORTHO05D004541 1.1e-59 233.4 132 88.6
Psat3g070640 Pisum sativum HOM05D003818 ORTHO05D004541 1.1e-59 233.4 146 83.6
Aa31LG9G1570 Aethionema arabicum HOM05D003818 ORTHO05D004541 1.4e-59 233.0 145 82.1
Carub.0003s2626 Capsella rubella HOM05D003818 ORTHO05D004541 1.4e-59 233.0 145 83.4
CARHR264880 Cardamine hirsuta HOM05D003818 ORTHO05D004541 1.4e-59 233.0 145 82.1
TAR375G1045 Trochodendron aralioides HOM05D003818 ORTHO05D004541 1.8e-59 232.6 141 84.4
BolC4t26244H Brassica oleracea HOM05D003818 ORTHO05D004541 2.4e-59 232.3 145 82.1
AT2G04630 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 4.1e-59 231.5 145 83.4
AT5G51940 Arabidopsis thaliana HOM05D003818 ORTHO05D004541 4.1e-59 231.5 145 82.1
Carub.0008s1203 Capsella rubella HOM05D003818 ORTHO05D004541 4.1e-59 231.5 145 82.8
Medtr7g092450 Medicago truncatula HOM05D003818 ORTHO05D004541 4.1e-59 231.5 146 82.2
Sp7g01990 Schrenkiella parvula HOM05D003818 ORTHO05D004541 5.3e-59 231.1 145 82.1
Duzib068G1062 Durio zibethinus HOM05D003818 ORTHO05D004541 6.9e-59 230.7 145 83.4
Atru.chr1.512 Acer truncatum HOM05D003818 ORTHO05D004541 1.5e-58 229.6 145 82.8
Gohir.A11G009700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.6e-58 228.8 145 82.8
Cfa008286 Carpinus fangiana HOM05D003818 ORTHO05D004541 3.4e-58 228.4 132 87.1
GSVIVG01010613001 Vitis vinifera HOM05D003818 ORTHO05D004541 3.4e-58 228.4 143 81.8
THA.LOC104818368 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 4.5e-58 228.0 145 81.4
BcaB04g19460 Brassica carinata HOM05D003818 ORTHO05D004541 1.0e-57 226.9 145 80.7
Gohir.D11G009000 Gossypium hirsutum HOM05D003818 ORTHO05D004541 1.0e-57 226.9 145 82.1
Gorai.007G010600 Gossypium raimondii HOM05D003818 ORTHO05D004541 1.0e-57 226.9 145 82.1
MBI04_g00300_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 1.0e-57 226.9 146 82.9
Os03g0586600 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 1.0e-57 226.9 144 81.2
Thhalv10005087m.g Eutrema salsugineum HOM05D003818 ORTHO05D004541 1.3e-57 226.5 145 80.7
ATR0757G129 Amborella trichopoda HOM05D003818 ORTHO05D004541 1.7e-57 226.1 145 80.7
BcaC04g23878 Brassica carinata HOM05D003818 ORTHO05D004541 3.8e-57 224.9 145 80.0
A09p03630 Brassica napus HOM05D003818 ORTHO05D004541 3.8e-57 224.9 145 80.0
C09p03860 Brassica napus HOM05D003818 ORTHO05D004541 3.8e-57 224.9 145 80.0
BolC9t53311H Brassica oleracea HOM05D003818 ORTHO05D004541 3.8e-57 224.9 145 80.0
BraA09t36001Z Brassica rapa HOM05D003818 ORTHO05D004541 3.8e-57 224.9 145 80.0
Migut.K00399 Erythranthe guttata HOM05D003818 ORTHO05D004541 5.0e-57 224.6 145 83.4
Sp2g17150 Schrenkiella parvula HOM05D003818 ORTHO05D004541 5.0e-57 224.6 145 80.0
Zm00001eb219520 Zea mays HOM05D003818 ORTHO05D004541 5.0e-57 224.6 144 81.2
MELO3C006881.2 Cucumis melo HOM05D003818 ORTHO05D004541 6.5e-57 224.2 132 85.6
THA.LOC104819386 Tarenaya hassleriana HOM05D003818 ORTHO05D004541 6.5e-57 224.2 146 80.8
ClCG05G016800 Citrullus lanatus HOM05D002695 ORTHO05D002964 8.5e-57 223.8 130 86.9
MBI07_g30196_MAGBIO Magnolia biondii HOM05D003818 ORTHO05D004541 1.4e-56 223.0 146 82.9
HanXRQChr16g0532841 Helianthus annuus HOM05D003818 ORTHO05D004541 1.9e-56 222.6 146 82.2
Lalb_Chr06g0161031 Lupinus albus HOM05D003818 ORTHO05D004541 3.2e-56 221.9 144 78.5
SGA_v2.0_scaffold59G20747 Striga asiatica HOM05D003818 ORTHO05D004541 1.2e-55 219.9 144 80.6
Dinv28474 Davidia involucrata HOM05D003818 ORTHO05D004541 2.7e-55 218.8 145 79.3
MSTRG.27132 Avicennia marina HOM05D003818 ORTHO05D004541 4.6e-55 218.0 143 79.0
AUR62004298 Chenopodium quinoa HOM05D003818 ORTHO05D004541 6.1e-55 217.6 143 78.3
Os07g0463100 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D004541 6.1e-55 217.6 143 79.7
Atru.chr3.2134 Acer truncatum HOM05D003818 ORTHO05D004541 7.9e-55 217.2 144 79.9
Cc02_g03330 Coffea canephora HOM05D003818 ORTHO05D004541 7.9e-55 217.2 143 80.4
Oeu061636.1 Olea europaea HOM05D003818 ORTHO05D004541 7.9e-55 217.2 148 78.4
AUR62022747 Chenopodium quinoa HOM05D003818 ORTHO05D004541 1.3e-54 216.5 143 77.6
Rhsim05G0017100 Rhododendron simsii HOM05D003818 ORTHO05D004541 1.3e-54 216.5 145 80.7
HanXRQChr04g0108631 Helianthus annuus HOM05D003818 ORTHO05D004541 1.8e-54 216.1 147 79.6
Rhsim03G0177700 Rhododendron simsii HOM05D003818 ORTHO05D004541 1.8e-54 216.1 145 80.7
Solyc09g010500.3 Solanum lycopersicum HOM05D003818 ORTHO05D004541 2.3e-54 215.7 146 81.5
Sopen09g005230 Solanum pennellii HOM05D003818 ORTHO05D004541 2.3e-54 215.7 146 81.5
Thecc.03G171400 Theobroma cacao HOM05D003818 ORTHO05D004541 2.3e-54 215.7 144 78.5
EL10Ac1g00990 Beta vulgaris HOM05D003818 ORTHO05D004541 3.0e-54 215.3 143 76.2
Lsat_1_v5_gn_1_9221 Lactuca sativa HOM05D003818 ORTHO05D004541 3.0e-54 215.3 149 76.5
Duzib084G1211 Durio zibethinus HOM05D003818 ORTHO05D004541 3.9e-54 214.9 157 73.2
Haze_20202 Corylus avellana HOM05D003818 ORTHO05D004541 8.7e-54 213.8 123 86.2
PGSC0003DMG400008922 Solanum tuberosum HOM05D003818 ORTHO05D004541 8.7e-54 213.8 146 80.8
Dinv35185 Davidia involucrata HOM05D003818 ORTHO05D004541 1.5e-53 213.0 145 77.9
CsaV3_3G046320 Cucumis sativus L. HOM05D003818 ORTHO05D004541 3.3e-53 211.8 141 79.4
Hund27319 Selenicereus undatus HOM05D003818 ORTHO05D004541 7.4e-53 210.7 143 76.9
ClCG05G007860 Citrullus lanatus HOM05D003818 ORTHO05D004541 1.6e-52 209.5 201 59.7
Gohir.A08G082700 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.2e-52 209.1 145 77.2
Gohir.D08G112900 Gossypium hirsutum HOM05D003818 ORTHO05D004541 2.2e-52 209.1 145 77.2
Gorai.004G121300 Gossypium raimondii HOM05D003818 ORTHO05D004541 2.2e-52 209.1 145 77.2
Hma1.2p1_0099F.1_g048510 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 2.2e-52 209.1 148 77.0
Actinidia31809 Actinidia chinensis HOM05D003818 ORTHO05D004541 2.8e-52 208.8 143 78.3
Ciclev10006171m.g Citrus clementina HOM05D003818 ORTHO05D004541 8.2e-52 207.2 144 76.4
SEGI_10630 Sequoiadendron giganteum HOM05D003818 ORTHO05D004541 8.2e-52 207.2 150 76.7
COL.COLO4_14270 Corchorus olitorius HOM05D003818 ORTHO05D004541 1.1e-51 206.8 127 82.7
MSTRG.26327 Avicennia marina HOM05D003818 ORTHO05D004541 2.4e-51 205.7 143 78.3
CSS0048006 Camellia sinensis var. sinensis HOM05D003818 ORTHO05D004541 4.1e-51 204.9 135 80.0
SGA_v2.0_scaffold50G18457 Striga asiatica HOM05D003818 ORTHO05D004541 1.2e-50 203.4 180 66.1
DCAR_018174 Daucus carota HOM05D003818 ORTHO05D004541 3.4e-50 201.8 147 74.1
ECA247G1139 Erigeron canadensis HOM05D003818 ORTHO05D004541 4.5e-50 201.4 146 77.4
PSO478G0785 Papaver somniferum HOM05D003818 ORTHO05D004541 1.3e-49 199.9 145 75.9
PSO675G1382 Papaver somniferum HOM05D003818 ORTHO05D004541 1.3e-49 199.9 145 75.9
PSO782G3144 Papaver somniferum HOM05D003818 ORTHO05D004541 1.3e-49 199.9 145 75.9
Aqoxy7G00432 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.7e-49 199.5 144 73.6
Nitab4.5_0017332g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.7e-49 199.5 149 74.5
PSO541G1664 Papaver somniferum HOM05D003818 ORTHO05D004541 1.7e-49 199.5 144 75.7
Pp3c16_17050 Physcomitrium patens HOM05D003818 ORTHO05D004541 2.9e-49 198.7 145 73.1
CANSAT56G1911 Cannabis sativa HOM05D003818 ORTHO05D004541 1.4e-48 196.4 119 86.6
Hma1.2p1_0270F.1_g108370 Hydrangea macrophylla HOM05D003818 ORTHO05D004541 2.5e-48 195.7 135 77.0
vmacro16312 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 3.0e-46 188.7 169 65.1
unitig_0.g2487 Utricularia gibba HOM05D003818 ORTHO05D004541 3.9e-46 188.3 142 73.2
CDE06G2832 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 5.1e-46 188.0 144 71.5
CDE02G0031 Ceratophyllum demersum HOM05D003818 ORTHO05D004541 4.4e-45 184.9 143 72.7
Lsat_1_v5_gn_3_64081 Lactuca sativa HOM05D003818 ORTHO05D004541 5.7e-45 184.5 147 70.1
Oeu030115.1 Olea europaea HOM05D003818 ORTHO05D004541 5.7e-45 184.5 145 73.1
Peaxi162Scf00039g01318 Petunia axillaris HOM05D003818 ORTHO05D004541 2.2e-44 182.6 145 71.0
DCAR_009510 Daucus carota HOM05D000059 ORTHO05D000128 2.8e-44 182.2 99 89.9
AagrBONN_evm.TU.Sc2ySwM_344.4289 Anthoceros agrestis HOM05D003818 ORTHO05D004541 4.8e-44 181.4 146 69.9
vmacro06714 Vaccinium macrocarpon HOM05D003818 ORTHO05D004541 8.2e-44 180.6 136 73.5
Mapoly0001s0266 Marchantia polymorpha HOM05D003818 ORTHO05D004541 1.8e-43 179.5 146 68.5
Gohir.D12G260866 Gossypium hirsutum HOM05D003818 ORTHO05D004541 5.3e-43 177.9 133 72.2
Peaxi162Scf01172g00037 Petunia axillaris HOM05D003818 ORTHO05D004541 9.1e-43 177.2 138 70.3
Zm00001eb049200 Zea mays HOM05D003818 ORTHO05D004541 2.6e-42 175.6 120 78.3
SMO200G0145 Selaginella moellendorffii HOM05D003818 ORTHO05D004541 2.2e-41 172.6 95 86.3
Sc23g0003230 Simmondsia chinensis HOM05D003818 ORTHO05D004541 2.9e-41 172.2 131 71.8
TAR375G0179 Trochodendron aralioides HOM05D003818 ORTHO05D004541 8.5e-41 170.6 115 80.0
Aqoxy6G01685 Aquilegia oxysepala HOM05D003818 ORTHO05D004541 1.1e-40 170.2 135 73.3
Nitab4.5_0006124g0010 Nicotiana tabacum HOM05D003818 ORTHO05D004541 2.5e-40 169.1 121 78.5
SalBow5G5531 Salvia bowleyana HOM05D003818 ORTHO05D004541 3.2e-40 168.7 124 77.4
MD09G1242800 Malus domestica HOM05D003818 ORTHO05D004541 2.1e-39 166.0 91 90.1
Haze_09431 Corylus avellana HOM05D003818 ORTHO05D004541 6.7e-38 161.0 132 67.4
Prupe.7G013200 Prunus persica HOM05D003818 ORTHO05D004541 5.7e-37 157.9 98 86.7
CAN.G97.6 Capsicum annuum HOM05D003818 ORTHO05D004541 1.3e-36 156.8 112 78.6
Oeu021768.1 Olea europaea HOM05D003818 ORTHO05D004541 1.7e-36 156.4 121 72.7
CBR_g31915 Chara braunii HOM05D003818 ORTHO05D004541 2.2e-36 156.0 149 61.7
VMungo0647G2358 Vigna mungo HOM05D003818 ORTHO05D004541 2.6e-34 149.1 102 78.4
arahy.Tifrunner.gnm1.ann1.36XVJD Arachis hypogaea HOM05D003818 ORTHO05D004541 1.3e-33 146.7 111 71.2
MELO3C003707.2 Cucumis melo HOM05D003818 ORTHO05D004541 1.3e-33 146.7 141 57.4
Cre01.g002200 Chlamydomonas reinhardtii HOM05D003818 ORTHO05D004541 4.0e-30 135.2 140 55.7
MCO13G124 Micromonas commoda HOM05D003818 ORTHO05D004541 4.0e-30 135.2 117 60.7
PRCOL_00007084 Prasinoderma coloniale HOM05D003818 ORTHO05D004541 6.7e-30 134.4 129 58.9
Oeu021769.1 Olea europaea HOM05D003818 ORTHO05D004541 1.4e-27 126.7 97 72.2
SalBow8G3306 Salvia bowleyana HOM05D003818 ORTHO05D004541 2.4e-27 125.9 119 63.9
SalBow8G5018 Salvia bowleyana HOM05D003818 ORTHO05D004541 2.4e-27 125.9 119 63.9
Nitab4.5_0002113g0140 Nicotiana tabacum HOM05D003818 ORTHO05D004541 9.1e-27 124.0 105 71.4
Haze_26305 Corylus avellana HOM05D003818 ORTHO05D004541 1.3e-25 120.2 69 81.2
Nitab4.5_0002077g0060 Nicotiana tabacum HOM05D003818 ORTHO05D004541 1.3e-25 120.2 145 53.8
TAR374G0228 Trochodendron aralioides HOM05D003818 ORTHO05D004541 8.5e-25 117.5 64 87.5
arahy.Tifrunner.gnm1.ann1.99YBLU Arachis hypogaea HOM05D003818 ORTHO05D004541 1.9e-24 116.3 132 54.5
arahy.Tifrunner.gnm1.ann1.28837M Arachis hypogaea HOM05D003818 ORTHO05D004541 2.5e-24 115.9 132 52.3
arahy.Tifrunner.gnm1.ann1.TF2L72 Arachis hypogaea HOM05D003818 ORTHO05D004541 1.6e-23 113.2 82 73.2
arahy.Tifrunner.gnm1.ann1.VWKV4W Arachis hypogaea HOM05D003818 ORTHO05D004541 6.1e-23 111.3 77 75.3
arahy.Tifrunner.gnm1.ann1.FSRU1U Arachis hypogaea HOM05D003818 ORTHO05D004541 1.0e-22 110.5 76 76.3
AagrBONN_evm.TU.Sc2ySwM_344.4292 Anthoceros agrestis HOM05D003818 ORTHO05D004541 7.5e-21 104.4 87 65.5
Actinidia03108 Actinidia chinensis HOM05D003818 ORTHO05D054983 7.7e-18 94.4 47 89.4
PGR142G2678 Punica granatum HOM05D003818 ORTHO05D004541 1.3e-17 93.6 82 64.6
Os08g0426000 Oryza sativa ssp. japonica HOM05D003818 ORTHO05D295196 1.2e-15 87.0 77 62.3
arahy.Tifrunner.gnm1.ann1.VXTW3V Arachis hypogaea HOM05D003818 ORTHO05D013217 5.0e-09 65.1 35 91.4


User provided reference genes

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