Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 6.2e-266 920.2 461 100.0
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 4.8e-218 761.1 457 83.6
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 6.2e-218 760.8 457 83.6
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 1.8e-217 759.2 457 83.6
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 6.9e-217 757.3 457 83.4
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 7.2e-198 694.1 451 75.6
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 4.3e-195 684.9 448 75.4
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 3.7e-194 681.8 459 74.1
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 5.1e-188 661.4 431 74.7
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 1.1e-187 660.2 428 74.8
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 4.4e-187 658.3 427 74.9
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 8.2e-186 654.1 426 73.9
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 2.6e-184 649.0 427 73.5
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 1.3e-183 646.7 426 73.2
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 3.8e-183 645.2 428 73.1
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 3.2e-182 642.1 427 72.6
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 3.2e-182 642.1 419 74.5
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 9.4e-182 640.6 418 73.9
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 1.6e-181 639.8 427 71.2
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 2.1e-181 639.4 423 72.6
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 2.7e-181 639.0 429 72.0
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 6.1e-181 637.9 429 71.3
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 8.0e-181 637.5 419 74.7
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 1.0e-180 637.1 429 71.8
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 1.0e-180 637.1 428 72.4
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 1.0e-180 637.1 419 73.3
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 2.3e-180 636.0 426 72.3
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 3.3e-179 632.1 429 71.1
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 4.8e-178 628.2 427 71.4
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 4.8e-178 628.2 457 68.1
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 1.1e-177 627.1 423 71.6
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 7.0e-177 624.4 423 71.4
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 9.1e-177 624.0 421 71.3
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 2.7e-176 622.5 426 71.1
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 3.5e-176 622.1 421 71.7
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 3.5e-176 622.1 427 70.5
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 1.0e-175 620.5 426 70.9
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 6.5e-175 617.8 426 70.7
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 1.6e-173 613.2 427 70.3
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 1.4e-172 610.1 443 69.5
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 1.4e-172 610.1 422 70.9
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 1.5e-171 606.7 423 70.9
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 2.6e-171 605.9 423 70.2
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 3.4e-171 605.5 422 68.5
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 5.7e-171 604.7 426 69.2
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 5.7e-171 604.7 421 70.3
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 5.7e-171 604.7 421 70.3
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 3.7e-170 602.1 427 67.7
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 1.8e-169 599.7 412 70.4
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 2.4e-169 599.4 422 69.2
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 3.1e-169 599.0 439 66.7
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 7.0e-169 597.8 418 67.7
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 2.0e-168 596.3 422 68.2
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 2.0e-168 596.3 421 67.5
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 1.0e-167 594.0 425 68.0
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 1.1e-166 590.5 433 65.8
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 1.1e-166 590.5 422 68.7
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 1.5e-166 590.1 433 66.1
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 4.2e-166 588.6 441 66.9
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 9.4e-166 587.4 421 67.2
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 6.1e-165 584.7 420 66.2
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 6.1e-165 584.7 421 66.7
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 6.1e-165 584.7 425 66.1
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 1.0e-164 583.9 436 65.4
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 1.8e-164 583.2 419 66.8
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 1.8e-164 583.2 468 62.0
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 4.0e-164 582.0 444 63.5
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 4.4e-163 578.6 420 65.5
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 1.3e-162 577.0 420 65.5
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 2.2e-162 576.2 428 67.8
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 2.2e-162 576.2 428 67.8
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 2.2e-162 576.2 434 66.4
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 2.2e-162 576.2 533 57.8
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 2.8e-162 575.9 428 67.8
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 4.9e-162 575.1 428 67.3
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 4.9e-162 575.1 417 65.5
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 4.9e-162 575.1 417 65.5
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 1.1e-161 573.9 421 68.2
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 3.1e-161 572.4 450 65.8
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 5.4e-161 571.6 418 67.0
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 5.4e-161 571.6 422 66.1
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 7.0e-161 571.2 425 64.9
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 7.0e-161 571.2 429 65.7
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 2.0e-160 569.7 427 64.6
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 3.5e-160 568.9 442 63.3
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 4.5e-160 568.5 447 62.9
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 7.7e-160 567.8 422 65.2
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 5.0e-159 565.1 422 65.2
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 2.5e-158 562.8 422 64.7
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 2.5e-158 562.8 422 65.2
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 2.5e-158 562.8 428 63.1
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 7.3e-158 561.2 419 64.7
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 9.5e-158 560.8 419 65.4
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 3.0e-156 555.8 431 63.6
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 2.4e-153 546.2 419 65.2
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 1.2e-152 543.9 431 61.9
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 7.8e-152 541.2 424 61.1
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 2.3e-151 539.7 419 63.5
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 3.6e-149 532.3 427 58.3
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 6.4e-146 521.5 414 61.4
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 2.7e-144 516.2 428 59.1
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 1.3e-143 513.8 334 75.1
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 1.9e-134 483.4 354 66.1
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 4.3e-134 482.3 430 55.1
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 5.6e-134 481.9 430 55.6
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 2.1e-128 463.4 421 53.7
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 1.8e-124 450.3 440 55.5
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 2.4e-124 449.9 440 51.4
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 4.0e-124 449.1 426 54.7
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 2.0e-123 446.8 429 56.6
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 5.4e-121 438.7 296 69.6
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 1.6e-120 437.2 350 63.4
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 7.8e-120 434.9 431 47.8
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 1.4e-116 424.1 260 78.1
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 1.9e-110 403.7 244 79.1
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 9.3e-105 384.8 425 49.9
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 2.7e-88 330.1 192 79.2
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 2.5e-81 307.0 451 40.4
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 6.5e-74 282.3 248 57.3
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 5.5e-65 252.7 182 67.6
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 9.4e-65 251.9 290 47.9
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 6.1e-48 196.1 136 70.6
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 2.9e-29 134.0 94 66.0
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 1.3e-26 125.2 95 62.1
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 4.3e-25 120.2 95 63.2
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 1.2e-19 102.1 89 56.2
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 4.0e-15 87.0 363 25.1
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 5.6e-09 66.6 91 44.0
CSS0028086 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 5.8e-06 56.6 41 61.0


User provided reference genes

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