Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0274531 Rosa chinensis HOM05D002566 ORTHO05D344353 4.9e-47 190.7 88 100.0
RcHm_v2.0_Chr4g0434101 Rosa chinensis HOM05D002566 ORTHO05D002897 3.4e-08 61.6 52 65.4
CARHR023330 Cardamine hirsuta HOM05D002566 ORTHO05D002897 5.9e-08 60.8 52 61.5
Thhalv10007812m.g Eutrema salsugineum HOM05D002566 ORTHO05D002897 1.7e-07 59.3 52 59.6
Sed0022179 Sechium edule HOM05D002566 ORTHO05D002897 1.7e-07 59.3 52 57.7
Lalb_Chr02g0145681 Lupinus albus HOM05D002566 ORTHO05D002897 2.9e-07 58.5 52 55.8
Os01g0502400 Oryza sativa ssp. japonica HOM05D002566 ORTHO05D002897 2.9e-07 58.5 52 59.6
MSTRG.7634 Avicennia marina HOM05D002566 ORTHO05D002897 3.8e-07 58.2 52 57.7
ClCG01G005980 Citrullus lanatus HOM05D002566 ORTHO05D002897 3.8e-07 58.2 52 57.7
MELO3C005334.2 Cucumis melo HOM05D002566 ORTHO05D002897 3.8e-07 58.2 52 57.7
CsaV3_5G028700 Cucumis sativus L. HOM05D002566 ORTHO05D002897 3.8e-07 58.2 52 57.7
HanXRQChr15g0477761 Helianthus annuus HOM05D002566 ORTHO05D002897 3.8e-07 58.2 52 59.6
HanXRQChr17g0553111 Helianthus annuus HOM05D002566 ORTHO05D002897 3.8e-07 58.2 52 59.6
MD13G1033500 Malus domestica HOM05D002566 ORTHO05D002897 5.0e-07 57.8 52 61.5
Solyc05g008610.3 Solanum lycopersicum HOM05D002566 ORTHO05D002897 5.0e-07 57.8 52 57.7
Sopen05g004450 Solanum pennellii HOM05D002566 ORTHO05D002897 5.0e-07 57.8 52 57.7
vmacro10612 Vaccinium macrocarpon HOM05D002566 ORTHO05D002897 5.0e-07 57.8 52 55.8
Aqoxy3G00179 Aquilegia oxysepala HOM05D002566 ORTHO05D002897 6.5e-07 57.4 52 59.6
Cpa.g.sc65.82 Carica papaya HOM05D002566 ORTHO05D002897 6.5e-07 57.4 52 57.7
Prupe.1G319300 Prunus persica HOM05D002566 ORTHO05D002897 6.5e-07 57.4 52 57.7
HPP92_008229 Vanilla planifolia HOM05D002566 ORTHO05D002897 6.5e-07 57.4 52 59.6
CSS0039889 Camellia sinensis var. sinensis HOM05D002566 ORTHO05D002897 8.5e-07 57.0 52 57.7
MD16G1035400 Malus domestica HOM05D002566 ORTHO05D002897 8.5e-07 57.0 52 61.5
Nitab4.5_0000350g0080 Nicotiana tabacum HOM05D002566 ORTHO05D002897 8.5e-07 57.0 52 57.7
Nitab4.5_0003886g0080 Nicotiana tabacum HOM05D002566 ORTHO05D002897 8.5e-07 57.0 52 57.7
Peaxi162Scf00205g01133 Petunia axillaris HOM05D002566 ORTHO05D002897 8.5e-07 57.0 52 57.7
Atru.chr11.321 Acer truncatum HOM05D002566 ORTHO05D002897 1.1e-06 56.6 52 57.7
Actinidia14932 Actinidia chinensis HOM05D002566 ORTHO05D002897 1.1e-06 56.6 52 57.7
BcaB03g11917 Brassica carinata HOM05D002566 ORTHO05D002897 1.1e-06 56.6 51 58.8
BcaC07g39179 Brassica carinata HOM05D002566 ORTHO05D002897 1.1e-06 56.6 51 58.8
C08p21690 Brassica napus HOM05D002566 ORTHO05D002897 1.1e-06 56.6 51 58.8
BolC8t49807H Brassica oleracea HOM05D002566 ORTHO05D002897 1.1e-06 56.6 51 58.8
CDE04G1760 Ceratophyllum demersum HOM05D002566 ORTHO05D002897 1.1e-06 56.6 52 57.7
Duzib160G0102 Durio zibethinus HOM05D002566 ORTHO05D002897 1.1e-06 56.6 52 57.7
FvH4_4g26460 Fragaria vesca HOM05D002566 ORTHO05D002897 1.1e-06 56.6 52 61.5
Oeu057773.3 Olea europaea HOM05D002566 ORTHO05D002897 1.1e-06 56.6 52 57.7
PGSC0003DMG400030519 Solanum tuberosum HOM05D002566 ORTHO05D002897 1.1e-06 56.6 52 55.8
FAN12G1101 Fragaria x ananassa HOM05D002566 ORTHO05D002897 1.4e-06 56.2 52 61.5
Nitab4.5_0002156g0080 Nicotiana tabacum HOM05D002566 ORTHO05D002897 1.4e-06 56.2 52 57.7
unitig_0.g2338 Utricularia gibba HOM05D002566 ORTHO05D002897 1.4e-06 56.2 52 53.8
Aa31LG7G6960 Aethionema arabicum HOM05D002566 ORTHO05D002897 1.9e-06 55.8 52 59.6
AL1G36510 Arabidopsis lyrata HOM05D002566 ORTHO05D002897 1.9e-06 55.8 52 59.6
AT1G22950 Arabidopsis thaliana HOM05D002566 ORTHO05D002897 1.9e-06 55.8 52 59.6
CSS0020505 Camellia sinensis var. sinensis HOM05D002566 ORTHO05D002897 1.9e-06 55.8 52 55.8
Dinv04914 Davidia involucrata HOM05D002566 ORTHO05D002897 1.9e-06 55.8 52 57.7
Dinv16156 Davidia involucrata HOM05D002566 ORTHO05D002897 1.9e-06 55.8 52 57.7
SGA_v2.0_scaffold38G15028 Striga asiatica HOM05D002566 ORTHO05D002897 1.9e-06 55.8 52 57.7
A09p41790 Brassica napus HOM05D002566 ORTHO05D002897 2.5e-06 55.5 55 54.5
BraA09t39667Z Brassica rapa HOM05D002566 ORTHO05D002897 2.5e-06 55.5 55 54.5
CDE06G1193 Ceratophyllum demersum HOM05D002566 ORTHO05D002897 2.5e-06 55.5 52 55.8
Ca_11120_v3 Cicer arietinum L. HOM05D002566 ORTHO05D002897 2.5e-06 55.5 52 55.8
Hma1.2p1_0882F.1_g232220 Hydrangea macrophylla HOM05D002566 ORTHO05D002897 2.5e-06 55.5 52 57.7
Nn4g24005 Nelumbo nucifera HOM05D002566 ORTHO05D002897 2.5e-06 55.5 52 55.8
Rhsim09G0102400 Rhododendron simsii HOM05D002566 ORTHO05D002897 2.5e-06 55.5 52 53.8
Sp1g20410 Schrenkiella parvula HOM05D002566 ORTHO05D002897 2.5e-06 55.5 52 59.6
Zm00001eb132300 Zea mays HOM05D002566 ORTHO05D002897 2.5e-06 55.5 52 55.8
ATR0589G011 Amborella trichopoda HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 53.8
Cpa.g.sc65.84 Carica papaya HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 57.7
COL.COLO4_26850 Corchorus olitorius HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 57.7
Gohir.A03G079900 Gossypium hirsutum HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 57.7
Gohir.A06G119700 Gossypium hirsutum HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 57.7
Gohir.D02G103900 Gossypium hirsutum HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 57.7
Gorai.005G118000 Gossypium raimondii HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 57.7
Gorai.010G144300 Gossypium raimondii HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 57.7
HanXRQChr17g0567111 Helianthus annuus HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 55.8
Oeu048384.2 Olea europaea HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 55.8
Sabra08G0094800 Salix brachista HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 57.7
Solyc04g080877.1 Solanum lycopersicum HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 57.7
Thecc.06G003400 Theobroma cacao HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 57.7
TAR371G0265 Trochodendron aralioides HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 53.8
TAR371G0513 Trochodendron aralioides HOM05D002566 ORTHO05D002897 3.2e-06 55.1 52 53.8
arahy.Tifrunner.gnm1.ann1.G05VUU Arachis hypogaea HOM05D002566 ORTHO05D002897 4.2e-06 54.7 52 55.8
BcaB07g32293 Brassica carinata HOM05D002566 ORTHO05D002897 4.2e-06 54.7 52 57.7
A08p28400 Brassica napus HOM05D002566 ORTHO05D002897 4.2e-06 54.7 51 56.9
BraA08t34770Z Brassica rapa HOM05D002566 ORTHO05D002897 4.2e-06 54.7 51 56.9
DCAR_007273 Daucus carota HOM05D002566 ORTHO05D002897 4.2e-06 54.7 52 53.8
Migut.L01013 Erythranthe guttata HOM05D002566 ORTHO05D002897 4.2e-06 54.7 52 55.8
Lj6A751T56 Lonicera japonica HOM05D002566 ORTHO05D002897 4.2e-06 54.7 52 53.8
Peaxi162Scf00189g01217 Petunia axillaris HOM05D002566 ORTHO05D002897 4.2e-06 54.7 52 57.7
Potri.008G125800 Populus trichocarpa HOM05D002566 ORTHO05D002897 4.2e-06 54.7 52 57.7
TPR.G4825 Trifolium pratense HOM05D002566 ORTHO05D002897 4.2e-06 54.7 52 53.8
Aa31LG8G5050 Aethionema arabicum HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 53.8
arahy.Tifrunner.gnm1.ann1.CI1GV9 Arachis hypogaea HOM05D002566 ORTHO05D002897 5.5e-06 54.3 53 47.2
arahy.Tifrunner.gnm1.ann1.X5S011 Arachis hypogaea HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 53.8
CANSAT80G1736 Cannabis sativa HOM05D002566 ORTHO05D002897 5.5e-06 54.3 53 54.7
CDE07G0021 Ceratophyllum demersum HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 57.7
ECA234G2071 Erigeron canadensis HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 57.7
FvH4_5g16830 Fragaria vesca HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 57.7
FAN04G0873 Fragaria x ananassa HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 57.7
FAN08G0697 Fragaria x ananassa HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 57.7
FAN18G0079 Fragaria x ananassa HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 57.7
Glyma.09G179300 Glycine max HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 53.8
PSO063G4142 Papaver somniferum HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 55.8
PSO782G4436 Papaver somniferum HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 55.8
Psat6g223600 Pisum sativum HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 53.8
Hund13806 Selenicereus undatus HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 55.8
Sopen04g034470 Solanum pennellii HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 57.7
TAR622G1349 Trochodendron aralioides HOM05D002566 ORTHO05D002897 5.5e-06 54.3 52 53.8
Ca_17230_v3 Cicer arietinum L. HOM05D002566 ORTHO05D002897 7.2e-06 53.9 52 53.8
FAN13G2250 Fragaria x ananassa HOM05D002566 ORTHO05D002897 7.2e-06 53.9 52 57.7
Lj5g0020697 Lotus japonicus HOM05D002566 ORTHO05D002897 7.2e-06 53.9 76 42.1
Manes.14G108800 Manihot esculenta HOM05D002566 ORTHO05D002897 7.2e-06 53.9 52 57.7
Medtr1g109230 Medicago truncatula HOM05D002566 ORTHO05D002897 7.2e-06 53.9 52 53.8
Cc11_g09340 Coffea canephora HOM05D002566 ORTHO05D002897 9.4e-06 53.5 52 55.8
Eucgr.K02241 Eucalyptus grandis HOM05D002566 ORTHO05D002897 9.4e-06 53.5 52 55.8
Potri.012G051200 Populus trichocarpa HOM05D002566 ORTHO05D002897 9.4e-06 53.5 55 50.9
SEGI_25959 Sequoiadendron giganteum HOM05D002566 ORTHO05D002897 9.4e-06 53.5 52 57.7


User provided reference genes

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