Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 2.6e-214 748.4 374 100.0
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 1.6e-171 606.3 375 84.3
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 1.6e-171 606.3 375 84.3
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 2.2e-160 569.3 378 75.7
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 3.1e-135 485.7 375 67.5
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 4.1e-135 485.3 374 67.1
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 4.5e-134 481.9 383 66.6
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 1.3e-133 480.3 376 66.2
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 8.6e-133 477.6 373 67.0
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 1.9e-132 476.5 375 66.4
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 3.4e-129 465.7 373 65.7
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 4.4e-129 465.3 375 63.5
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 5.7e-129 464.9 376 64.4
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 2.9e-125 452.6 370 63.8
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.8e-125 452.2 378 63.8
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 1.1e-124 450.7 379 62.8
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.9e-124 449.9 378 63.5
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 2.1e-123 446.4 338 70.4
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 2.8e-123 446.0 378 63.0
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 8.0e-123 444.5 377 61.8
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 4.0e-122 442.2 375 61.3
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 1.2e-121 440.7 373 61.4
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 8.3e-120 434.5 372 60.8
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 8.3e-120 434.5 376 61.7
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 4.1e-119 432.2 377 61.0
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 1.2e-118 430.6 375 59.5
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 1.7e-117 426.8 373 60.3
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 5.0e-117 425.2 374 60.7
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 6.6e-117 424.9 376 59.6
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 3.3e-116 422.5 377 58.1
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 3.6e-115 419.1 375 57.6
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 4.7e-115 418.7 373 60.6
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 6.2e-115 418.3 374 61.5
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 6.2e-115 418.3 375 57.6
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 1.1e-114 417.5 375 59.5
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 1.8e-114 416.8 375 59.5
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 3.4e-113 412.5 373 57.1
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 3.7e-112 409.1 376 58.0
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 4.9e-112 408.7 373 59.5
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 6.4e-112 408.3 372 60.8
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 1.4e-111 407.1 375 56.5
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 1.4e-111 407.1 376 57.2
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 1.4e-111 407.1 375 57.3
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 7.0e-111 404.8 373 60.1
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 9.2e-111 404.4 373 57.9
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 2.7e-110 402.9 377 56.8
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 3.5e-110 402.5 375 58.4
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 3.5e-110 402.5 377 56.5
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 3.5e-110 402.5 375 60.0
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 3.0e-109 399.4 375 57.6
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 1.1e-108 397.5 379 58.6
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 8.1e-107 391.3 376 58.2
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 1.4e-106 390.6 333 59.8
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 4.0e-106 389.0 376 57.7
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 1.2e-105 387.5 379 55.7
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 3.4e-105 386.0 375 54.1
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 4.9e-104 382.1 372 57.3
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 4.9e-104 382.1 374 56.1
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 1.1e-103 380.9 374 55.6
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 1.9e-103 380.2 324 60.5
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 7.1e-103 378.3 375 56.3
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 7.8e-102 374.8 386 51.6
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 1.0e-101 374.4 396 54.0
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 1.5e-100 370.5 375 55.2
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 1.9e-100 370.2 379 54.6
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 1.9e-100 370.2 377 53.6
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 2.5e-100 369.8 378 55.0
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 7.3e-100 368.2 372 55.9
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 7.3e-100 368.2 374 54.5
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 1.2e-99 367.5 374 52.4
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 4.7e-99 365.5 380 54.5
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 8.1e-99 364.8 374 53.7
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 3.1e-98 362.8 375 53.1
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 3.1e-98 362.8 376 53.5
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 6.8e-98 361.7 374 54.0
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 2.0e-97 360.1 374 52.7
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 2.0e-97 360.1 374 53.5
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 2.0e-97 360.1 374 53.5
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 3.8e-96 355.9 378 53.2
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 3.8e-96 355.9 378 52.4
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 4.9e-96 355.5 379 53.6
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 1.1e-95 354.4 378 52.4
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 1.9e-95 353.6 378 52.6
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 2.4e-95 353.2 179 96.6
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 2.1e-94 350.1 397 50.9
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 2.1e-91 340.1 375 52.0
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 4.7e-91 339.0 375 50.7
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 1.1e-90 337.8 398 49.0
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 2.4e-90 336.7 372 51.3
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 3.1e-90 336.3 379 46.7
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 1.9e-87 327.0 384 46.9
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 5.1e-85 318.9 284 60.9
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 2.8e-83 313.2 376 48.1
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 4.2e-71 272.7 225 65.8
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 3.0e-69 266.5 253 57.3
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 5.1e-69 265.8 255 55.7
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 1.1e-68 264.6 317 50.8
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 1.4e-66 257.7 392 39.5
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.4e-63 247.7 197 63.5
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 1.5e-60 237.7 382 39.5
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 6.5e-56 222.2 378 38.6
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 8.8e-53 211.8 170 64.7
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 2.0e-49 200.7 168 62.5
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 1.7e-48 197.6 375 36.0
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 5.5e-47 192.6 160 59.4
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.6e-46 191.0 170 60.6
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 3.0e-45 186.8 233 47.2
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 1.5e-44 184.5 182 57.1
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 3.1e-42 176.8 270 41.9
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 2.6e-41 173.7 378 33.1
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 8.2e-35 152.1 168 50.6
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 6.1e-30 136.0 163 52.1
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 8.8e-29 132.1 189 41.3
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 1.5e-28 131.3 157 48.4
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.5e-28 131.3 189 41.3
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 6.5e-24 115.9 144 51.4
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 1.3e-16 91.7 156 30.8
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.7e-16 91.3 99 45.5
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 6.6e-16 89.4 72 62.5
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.9e-15 87.8 92 47.8
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 1.4e-13 81.6 83 50.6
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 7.8e-09 65.9 84 42.9
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 5.0e-08 63.2 83 39.8
FvH4_4g11432 Fragaria vesca HOM05D006028 ORTHO05D198168 4.3e-07 60.1 52 57.7


User provided reference genes

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