Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 0.0e+00 1652.1 829 100.0
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 0.0e+00 1520.4 830 92.9
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 0.0e+00 1259.2 831 78.6
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 0.0e+00 1239.2 830 77.3
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 0.0e+00 1181.4 829 74.4
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 0.0e+00 1179.9 844 70.7
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 0.0e+00 1163.3 773 75.2
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 2.4e-308 1062.0 827 65.2
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 2.8e-293 1011.9 810 63.7
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.2e-290 1002.3 644 80.0
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 1.6e-285 986.1 823 61.1
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 3.7e-269 931.8 778 61.3
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 5.3e-268 927.9 835 57.8
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 7.7e-267 924.1 821 57.6
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 9.7e-262 907.1 774 60.1
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 1.8e-260 902.9 832 57.9
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 8.8e-255 884.0 873 54.4
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 2.0e-254 882.9 864 54.3
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 2.2e-250 869.4 772 59.1
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 2.7e-248 862.4 821 54.6
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 4.7e-248 861.7 825 54.8
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 8.8e-247 857.4 829 56.1
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 7.0e-244 847.8 829 54.8
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 5.9e-243 844.7 837 55.7
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 6.1e-240 834.7 825 53.5
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 8.0e-240 834.3 822 54.0
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 5.2e-239 831.6 829 54.4
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 6.8e-239 831.2 778 55.1
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 1.3e-237 827.0 900 50.6
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 1.5e-233 813.5 837 53.3
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 1.9e-233 813.1 824 53.5
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 1.6e-232 810.1 810 54.1
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 1.0e-231 807.4 779 51.9
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 1.4e-231 807.0 766 55.4
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 1.2e-230 803.9 831 50.3
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 2.6e-230 802.7 828 51.3
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 9.8e-230 800.8 802 53.0
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 2.7e-227 792.7 819 53.2
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 1.9e-225 786.6 836 52.4
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 3.3e-225 785.8 828 49.6
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 5.6e-225 785.0 934 48.3
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 1.6e-224 783.5 793 53.5
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 4.7e-224 781.9 832 51.4
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 6.1e-224 781.6 829 52.4
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 2.6e-222 776.2 829 51.3
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 5.7e-222 775.0 829 50.3
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 2.4e-220 769.6 796 51.4
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 2.4e-220 769.6 796 51.4
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 4.6e-219 765.4 818 51.6
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 5.9e-219 765.0 829 50.7
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 1.7e-218 763.5 829 49.8
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 1.9e-217 760.0 785 51.5
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 5.6e-217 758.4 790 52.3
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 7.3e-217 758.1 791 52.6
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 1.2e-216 757.3 790 52.5
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 2.1e-216 756.5 774 53.6
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 2.3e-215 753.1 804 50.5
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 9.8e-214 747.7 843 48.6
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 1.7e-213 746.9 777 51.5
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 8.6e-210 734.6 769 51.8
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 3.3e-209 732.6 768 50.9
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.6e-206 723.0 868 47.0
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 5.4e-204 715.3 769 49.7
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 9.2e-204 714.5 821 48.7
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 7.8e-203 711.4 725 50.8
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 4.4e-198 695.7 825 45.6
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.3e-197 694.1 819 46.9
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 1.4e-196 690.6 782 47.8
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 4.6e-195 685.6 740 50.5
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 6.0e-195 685.3 828 47.1
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 1.3e-194 684.1 753 49.4
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 2.3e-194 683.3 821 46.0
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 5.1e-194 682.2 804 47.8
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 7.3e-193 678.3 686 53.8
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 5.2e-191 672.2 844 45.9
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 2.6e-190 669.8 825 46.8
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 4.9e-189 665.6 868 44.7
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 3.0e-186 656.4 590 57.1
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 5.1e-186 655.6 848 45.6
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.1e-183 647.9 865 46.1
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 2.0e-182 643.7 657 53.9
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 6.7e-178 628.6 772 46.1
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 4.3e-177 625.9 619 53.8
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 6.2e-176 622.1 799 44.7
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 1.4e-175 620.9 709 51.1
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 1.5e-174 617.5 845 41.5
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 2.0e-174 617.1 865 42.4
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 4.6e-171 605.9 790 42.8
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 7.4e-169 598.6 665 49.6
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 2.4e-167 593.6 814 45.3
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 5.5e-164 582.4 637 49.9
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 2.2e-152 543.9 601 48.4
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 1.1e-140 505.0 806 37.0
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 4.7e-131 473.0 547 47.0
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 1.6e-123 448.0 629 42.4
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 4.1e-119 433.3 539 44.7
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 1.9e-116 424.5 742 40.2
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 2.1e-115 421.0 360 57.2
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 3.7e-104 383.6 497 46.9
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 8.7e-77 292.7 253 57.3
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 1.2e-70 272.3 548 35.6
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 3.3e-68 264.2 373 42.1
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 3.8e-64 250.8 340 42.1
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 9.6e-52 209.5 219 51.1
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 7.6e-49 199.9 170 58.2
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 6.3e-43 180.3 555 25.9
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 5.3e-42 177.2 808 23.9
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 6.5e-40 170.2 602 25.2
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.1e-39 169.5 165 53.3
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 2.5e-39 168.3 145 59.3
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 2.5e-39 168.3 145 59.3
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 1.0e-37 162.9 639 23.8
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 1.8e-37 162.2 152 50.7
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 5.1e-37 160.6 469 26.9
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 2.1e-30 138.7 113 60.2
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 2.1e-30 138.7 113 60.2
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 7.4e-28 130.2 116 56.9
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 1.7e-24 119.0 141 46.1
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 2.2e-24 118.6 117 47.9
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 2.4e-18 98.6 91 52.7
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 8.0e-14 83.6 66 56.1
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 4.8e-11 74.3 71 56.3
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 4.8e-11 74.3 82 42.7
vmacro21815 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.8e-10 72.4 78 50.0
QL12p030791 Quercus lobata HOM05D005706 ORTHO05D007474 8.5e-08 63.5 357 21.6
PSO541G4059 Papaver somniferum HOM05D000001 ORTHO05D000003 3.2e-07 61.6 612 19.0
SalBow1G2657 Salvia bowleyana HOM05D000162 ORTHO05D000090 9.4e-07 60.1 139 28.8
AagrBONN_evm.TU.Sc2ySwM_344.2113 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-06 59.7 253 23.7
SalBow1G3819 Salvia bowleyana HOM05D000162 ORTHO05D000090 1.2e-06 59.7 139 28.1
SalBow8G4095 Salvia bowleyana HOM05D003489 ORTHO05D004109 1.2e-06 59.7 143 30.1
AagrBONN_evm.TU.Sc2ySwM_368.1447 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-06 59.3 306 22.2
ClCG05G013910 Citrullus lanatus HOM05D000001 ORTHO05D000003 2.1e-06 58.9 175 22.9
MELO3C014921.2 Cucumis melo HOM05D000001 ORTHO05D000003 2.1e-06 58.9 449 20.5
CsaV3_3G026750 Cucumis sativus L. HOM05D000001 ORTHO05D000003 2.7e-06 58.5 175 22.9
C07p29280 Brassica napus HOM05D002986 ORTHO05D007611 6.1e-06 57.4 187 27.8
DCAR_004720 Daucus carota HOM05D001779 ORTHO05D001753 8.0e-06 57.0 155 26.5


User provided reference genes

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