Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0265881 Rosa chinensis HOM05D001716 ORTHO05D343076 3.8e-44 181.0 85 100.0
MSTRG.3477 Avicennia marina HOM05D001716 ORTHO05D005286 2.2e-20 102.1 62 83.9
BraA06t26211Z Brassica rapa HOM05D001716 ORTHO05D005286 2.2e-20 102.1 62 83.9
Thhalv10004147m.g Eutrema salsugineum HOM05D001716 ORTHO05D005286 2.2e-20 102.1 62 83.9
FvH4_1g17590 Fragaria vesca HOM05D001716 ORTHO05D005286 2.2e-20 102.1 62 83.9
FAN23G1487 Fragaria x ananassa HOM05D001716 ORTHO05D005286 2.2e-20 102.1 62 83.9
FAN26G1334 Fragaria x ananassa HOM05D001716 ORTHO05D005286 2.2e-20 102.1 62 83.9
FAN28G0338 Fragaria x ananassa HOM05D001716 ORTHO05D005286 2.2e-20 102.1 62 83.9
Prupe.1G544700 Prunus persica HOM05D001716 ORTHO05D005286 2.2e-20 102.1 62 83.9
RcHm_v2.0_Chr2g0107901 Rosa chinensis HOM05D001716 ORTHO05D005286 2.2e-20 102.1 62 83.9
Sp2g29020 Schrenkiella parvula HOM05D001716 ORTHO05D005286 2.2e-20 102.1 62 83.9
THA.LOC104811581 Tarenaya hassleriana HOM05D001716 ORTHO05D005286 2.2e-20 102.1 62 83.9
Atru.chr3.1032 Acer truncatum HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Actinidia11972 Actinidia chinensis HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Actinidia36427 Actinidia chinensis HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
ATR0824G271 Amborella trichopoda HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
arahy.Tifrunner.gnm1.ann1.PJ5Q5S Arachis hypogaea HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
arahy.Tifrunner.gnm1.ann1.TSR8I7 Arachis hypogaea HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
MSTRG.23660 Avicennia marina HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
CANSAT01G2893 Cannabis sativa HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
CiPaw.02G001700 Carya illinoinensis HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
AUR62019612 Chenopodium quinoa HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
AUR62037589 Chenopodium quinoa HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
ClCG01G017700 Citrullus lanatus HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Ciclev10025549m.g Citrus clementina HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
COL.COLO4_11594 Corchorus olitorius HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
MELO3C007648.2 Cucumis melo HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
CsaV3_6G044230 Cucumis sativus L. HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
DCAR_025814 Daucus carota HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Dinv23031 Davidia involucrata HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Duzib187G1319 Durio zibethinus HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Duzib264G0207 Durio zibethinus HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
ECA232G0678 Erigeron canadensis HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Migut.H00335 Erythranthe guttata HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Eucgr.I00692 Eucalyptus grandis HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Glyma.08G335300 Glycine max HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Glyma.18G070300 Glycine max HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Gohir.A11G213500 Gossypium hirsutum HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Gohir.D11G209700 Gossypium hirsutum HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Gorai.007G224900 Gossypium raimondii HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
HanXRQChr12g0355061 Helianthus annuus HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
HanXRQChr15g0492541 Helianthus annuus HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Lsat_1_v5_gn_9_41920 Lactuca sativa HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Lj6g0016700 Lotus japonicus HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Lalb_Chr15g0082591 Lupinus albus HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Lalb_Chr18g0050591 Lupinus albus HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Manes.12G116100 Manihot esculenta HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Manes.13G110200 Manihot esculenta HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Nn5g30630 Nelumbo nucifera HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Oeu032428.1 Olea europaea HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Phvul.006G062800 Phaseolus vulgaris HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Rhsim10G0097300 Rhododendron simsii HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
RhsimUnG0241600 Rhododendron simsii HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Sc03g0002460 Simmondsia chinensis HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
Thecc.01G074300 Theobroma cacao HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
TWI39G0842 Tripterygium wilfordii HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
TWI74G0064 Tripterygium wilfordii HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
TAR381G1690 Trochodendron aralioides HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
TAR628G0067 Trochodendron aralioides HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
HPP92_019986 Vanilla planifolia HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
VMungo0540G0749 Vigna mungo HOM05D001716 ORTHO05D005286 4.9e-20 100.9 62 82.3
AL8G43670 Arabidopsis lyrata HOM05D001716 ORTHO05D005286 6.5e-20 100.5 62 82.3
AT5G67630 Arabidopsis thaliana HOM05D001716 ORTHO05D005286 6.5e-20 100.5 62 82.3
Carub.0008s2684 Capsella rubella HOM05D001716 ORTHO05D005286 6.5e-20 100.5 62 82.3
CARHR279960 Cardamine hirsuta HOM05D001716 ORTHO05D005286 6.5e-20 100.5 62 82.3
Cc07_g07250 Coffea canephora HOM05D001716 ORTHO05D005286 6.5e-20 100.5 62 80.6
Potri.016G096800 Populus trichocarpa HOM05D001716 ORTHO05D005286 6.5e-20 100.5 62 80.6
Zm00001eb107710 Zea mays HOM05D001716 ORTHO05D005286 6.5e-20 100.5 62 80.6
Gorai.003G095100 Gossypium raimondii HOM05D001716 ORTHO05D005286 8.4e-20 100.1 62 82.3
Ca_14882_v3 Cicer arietinum L. HOM05D001716 ORTHO05D005286 1.1e-19 99.8 62 80.6
Medtr3g061640 Medicago truncatula HOM05D001716 ORTHO05D005286 1.1e-19 99.8 62 80.6
Psat3g073800 Pisum sativum HOM05D001716 ORTHO05D005286 1.1e-19 99.8 62 80.6
Sed0022589 Sechium edule HOM05D001716 ORTHO05D005286 1.1e-19 99.8 62 80.6
Ah.13g075570 Amaranthus hybridus HOM05D001716 ORTHO05D005286 1.4e-19 99.4 62 80.6
Aqoxy3G00404 Aquilegia oxysepala HOM05D001716 ORTHO05D005286 1.4e-19 99.4 62 80.6
Haze_15267 Corylus avellana HOM05D001716 ORTHO05D005286 1.4e-19 99.4 62 80.6
Os06g0186900 Oryza sativa ssp. japonica HOM05D001716 ORTHO05D005286 1.4e-19 99.4 62 80.6
PSO017G1956 Papaver somniferum HOM05D001716 ORTHO05D005286 1.4e-19 99.4 62 80.6
Hund16410 Selenicereus undatus HOM05D001716 ORTHO05D005286 1.4e-19 99.4 62 80.6
SGA_v2.0_scaffold34G13838 Striga asiatica HOM05D001716 ORTHO05D005286 1.4e-19 99.4 62 80.6
CSS0031097 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D005286 1.9e-19 99.0 62 80.6
CAN.G354.11 Capsicum annuum HOM05D001716 ORTHO05D005286 1.9e-19 99.0 62 79.0
Dinv26947 Davidia involucrata HOM05D001716 ORTHO05D005286 1.9e-19 99.0 62 80.6
Nitab4.5_0000076g0030 Nicotiana tabacum HOM05D001716 ORTHO05D005286 1.9e-19 99.0 62 79.0
Nitab4.5_0001502g0030 Nicotiana tabacum HOM05D001716 ORTHO05D005286 1.9e-19 99.0 62 79.0
Solyc03g032070.3 Solanum lycopersicum HOM05D001716 ORTHO05D005286 1.9e-19 99.0 62 79.0
Sopen03g005920 Solanum pennellii HOM05D001716 ORTHO05D005286 1.9e-19 99.0 62 79.0
PGSC0003DMG400018681 Solanum tuberosum HOM05D001716 ORTHO05D005286 1.9e-19 99.0 62 79.0
Hma1.2p1_1662F.1_g296260 Hydrangea macrophylla HOM05D001716 ORTHO05D005286 3.2e-19 98.2 62 80.6
Psat5g162960 Pisum sativum HOM05D001716 ORTHO05D005286 3.2e-19 98.2 62 79.0
Potri.006G118900 Populus trichocarpa HOM05D001716 ORTHO05D005286 4.2e-19 97.8 62 79.0
CDE12G0541 Ceratophyllum demersum HOM05D001716 ORTHO05D005286 5.5e-19 97.4 62 79.0
unitig_52.g17605 Utricularia gibba HOM05D001716 ORTHO05D005286 5.5e-19 97.4 62 79.0
Gohir.D03G091700 Gossypium hirsutum HOM05D001716 ORTHO05D005286 7.1e-19 97.1 62 80.6
PGR004G2469 Punica granatum HOM05D001716 ORTHO05D005286 1.2e-18 96.3 57 80.7
A06p32790 Brassica napus HOM05D001716 ORTHO05D005286 1.6e-18 95.9 63 81.0
C03p59680 Brassica napus HOM05D001716 ORTHO05D005286 1.6e-18 95.9 63 81.0
BolC3t18230H Brassica oleracea HOM05D001716 ORTHO05D005286 1.6e-18 95.9 63 81.0
QL06p039377 Quercus lobata HOM05D001716 ORTHO05D005286 1.6e-18 95.9 62 79.0
CARHR158900 Cardamine hirsuta HOM05D001716 ORTHO05D005286 2.1e-18 95.5 62 75.8
Gohir.A03G065400 Gossypium hirsutum HOM05D001716 ORTHO05D005286 2.1e-18 95.5 62 79.0
Peaxi162Scf00155g00315 Petunia axillaris HOM05D001716 ORTHO05D005286 2.1e-18 95.5 62 75.8
Pp3c14_1470 Physcomitrium patens HOM05D001716 ORTHO05D005286 3.5e-18 94.7 62 79.0
Mapoly0059s0092 Marchantia polymorpha HOM05D001716 ORTHO05D005286 4.6e-18 94.4 62 79.0
Cre10.g442700 Chlamydomonas reinhardtii HOM05D001716 ORTHO05D005286 1.0e-17 93.2 62 77.4
Carub.0005s1618 Capsella rubella HOM05D001716 ORTHO05D005286 1.8e-17 92.4 57 78.9
SMO356G0332 Selaginella moellendorffii HOM05D001716 ORTHO05D005286 1.8e-17 92.4 62 77.4
Oeu011981.1 Olea europaea HOM05D001716 ORTHO05D005286 3.9e-17 91.3 76 67.1
AagrBONN_evm.TU.Sc2ySwM_362.2421 Anthoceros agrestis HOM05D001716 ORTHO05D005286 6.7e-17 90.5 62 75.8
MCO12G434 Micromonas commoda HOM05D001716 ORTHO05D005286 6.7e-17 90.5 62 75.8
AagrBONN_evm.TU.Sc2ySwM_228.3163 Anthoceros agrestis HOM05D001716 ORTHO05D005286 8.7e-17 90.1 62 74.2
AT3G49830 Arabidopsis thaliana HOM05D001716 ORTHO05D005286 1.5e-16 89.4 62 72.6
Mapoly0016s0079 Marchantia polymorpha HOM05D001716 ORTHO05D005286 2.5e-16 88.6 62 74.2
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 4.3e-16 87.8 62 74.2
Sabra06G0093500 Salix brachista HOM05D001716 ORTHO05D005286 5.7e-16 87.4 85 58.8
Haze_26491 Corylus avellana HOM05D001716 ORTHO05D005286 2.8e-15 85.1 55 72.7
EL10Ac6g15607 Beta vulgaris HOM05D001716 ORTHO05D005286 1.4e-11 72.8 124 41.1
CSS0020198 Camellia sinensis var. sinensis HOM05D001716 ORTHO05D005286 1.3e-07 59.7 62 58.1
FAN19G0905 Fragaria x ananassa HOM05D001716 ORTHO05D005286 2.8e-07 58.5 37 81.1
CDE01G0010 Ceratophyllum demersum HOM05D001716 ORTHO05D005286 4.8e-07 57.8 30 86.7
SEGI_24014 Sequoiadendron giganteum HOM05D001716 ORTHO05D005286 4.1e-06 54.7 37 75.7


User provided reference genes

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