Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 3.8e-75 284.6 134 100.0
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 1.0e-67 260.0 135 92.6
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.0e-67 260.0 135 92.6
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.0e-67 260.0 135 92.6
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 1.5e-58 229.6 133 82.7
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.9e-58 229.2 121 91.7
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 3.2e-58 228.4 130 83.1
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 1.4e-53 213.0 137 75.2
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 4.1e-53 211.5 139 72.7
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 7.0e-53 210.7 136 73.5
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 9.1e-53 210.3 116 81.0
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 1.7e-51 206.1 133 73.7
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 1.7e-51 206.1 133 73.7
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 2.2e-51 205.7 134 72.4
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 2.9e-51 205.3 112 81.2
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 2.9e-51 205.3 116 81.9
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 5.0e-51 204.5 133 76.7
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 5.0e-51 204.5 127 75.6
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 8.5e-51 203.8 134 71.6
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 8.5e-51 203.8 129 73.6
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 8.5e-51 203.8 130 73.8
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 8.5e-51 203.8 125 76.0
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 1.1e-50 203.4 133 72.9
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.5e-50 203.0 123 75.6
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 1.9e-50 202.6 136 71.3
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 4.2e-50 201.4 125 72.8
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 4.2e-50 201.4 115 79.1
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 5.5e-50 201.1 123 74.8
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 5.5e-50 201.1 141 68.1
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 7.2e-50 200.7 124 74.2
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 9.4e-50 200.3 115 77.4
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 1.6e-49 199.5 139 67.6
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 1.6e-49 199.5 139 67.6
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 2.1e-49 199.1 114 78.1
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 2.1e-49 199.1 139 67.6
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 2.7e-49 198.7 139 67.6
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 2.7e-49 198.7 133 70.7
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 6.1e-49 197.6 110 77.3
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 6.1e-49 197.6 116 78.4
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 6.1e-49 197.6 140 67.9
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 8.0e-49 197.2 122 75.4
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 8.0e-49 197.2 132 72.7
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 1.0e-48 196.8 119 79.0
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 1.8e-48 196.1 124 72.6
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 1.8e-48 196.1 95 94.7
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.8e-48 196.1 95 95.8
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 1.8e-48 196.1 117 78.6
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 1.8e-48 196.1 108 79.6
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 2.3e-48 195.7 111 77.5
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 2.3e-48 195.7 114 74.6
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 5.2e-48 194.5 111 81.1
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 5.2e-48 194.5 131 68.7
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 6.8e-48 194.1 111 75.7
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 6.8e-48 194.1 111 75.7
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 8.8e-48 193.7 129 68.2
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 8.8e-48 193.7 112 77.7
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 1.5e-47 193.0 110 78.2
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 1.5e-47 193.0 121 73.6
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 2.6e-47 192.2 138 67.4
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 3.4e-47 191.8 123 71.5
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 3.4e-47 191.8 112 75.9
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 5.7e-47 191.0 113 75.2
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 7.5e-47 190.7 128 69.5
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 1.3e-46 189.9 123 73.2
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.3e-46 189.9 112 76.8
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 1.7e-46 189.5 122 72.1
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 2.2e-46 189.1 108 74.1
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 2.2e-46 189.1 129 66.7
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 2.8e-46 188.7 127 68.5
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 3.7e-46 188.3 112 75.0
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 3.7e-46 188.3 122 71.3
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 3.7e-46 188.3 109 76.1
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 4.9e-46 188.0 127 69.3
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 4.9e-46 188.0 127 70.1
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 6.3e-46 187.6 108 77.8
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.8e-45 186.0 127 67.7
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 2.4e-45 185.7 114 72.8
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 2.0e-44 182.6 115 73.0
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 3.5e-44 181.8 110 73.6
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 5.9e-44 181.0 110 72.7
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 1.3e-43 179.9 115 72.2
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 1.3e-43 179.9 110 70.9
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 2.9e-43 178.7 111 69.4
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 3.8e-43 178.3 163 58.9
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 8.6e-43 177.2 108 69.4
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 1.1e-42 176.8 110 69.1
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 1.5e-42 176.4 112 67.0
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.5e-42 176.4 111 69.4
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 1.9e-42 176.0 110 69.1
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 4.2e-42 174.9 172 52.9
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 7.2e-42 174.1 110 68.2
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 7.2e-42 174.1 110 67.3
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 1.2e-41 173.3 112 69.6
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 1.5e-39 166.4 111 64.9
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 4.4e-39 164.9 161 52.8
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 5.7e-39 164.5 111 64.9
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 7.5e-39 164.1 125 60.8
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 2.2e-38 162.5 109 66.1
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 2.4e-37 159.1 109 64.2
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 1.2e-36 156.8 134 58.2
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 2.3e-35 152.5 128 53.9
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 5.6e-34 147.9 136 51.5
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 4.7e-33 144.8 112 55.4
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 2.0e-28 129.4 81 77.8
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 2.3e-27 125.9 105 51.4
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 1.9e-26 122.9 102 54.9
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 2.2e-22 109.4 88 61.4
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 8.3e-22 107.5 96 54.2
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 5.4e-21 104.8 112 44.6
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 1.6e-17 93.2 60 65.0
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 1.6e-17 93.2 51 78.4
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 3.6e-17 92.0 53 79.2
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 4.7e-17 91.7 51 74.5
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 6.2e-17 91.3 51 74.5
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 1.8e-16 89.7 51 74.5
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 8.9e-16 87.4 113 39.8
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 5.8e-15 84.7 49 73.5
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 1.7e-14 83.2 48 72.9
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 6.4e-14 81.3 50 70.0
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 8.4e-14 80.9 45 75.6
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 8.4e-14 80.9 53 69.8
PRCOL_00001485 Prasinoderma coloniale HOM05D006465 ORTHO05D008207 1.2e-07 60.5 94 40.4
Cre07.g323050 Chlamydomonas reinhardtii HOM05D006465 ORTHO05D008207 4.4e-07 58.5 74 33.8


User provided reference genes

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