Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0261321 Rosa chinensis HOM05D003472 ORTHO05D039007 5.3e-53 210.7 102 100.0
FvH4_5g11460 Fragaria vesca HOM05D003472 ORTHO05D004200 1.1e-26 123.2 62 91.9
FAN04G2329 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.1e-26 123.2 62 91.9
FAN13G1911 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.1e-26 123.2 62 91.9
FAN18G4027 Fragaria x ananassa HOM05D003472 ORTHO05D004200 1.1e-26 123.2 62 91.9
FAN08G2572 Fragaria x ananassa HOM05D003472 ORTHO05D004200 4.2e-26 121.3 62 90.3
RcHm_v2.0_Chr7g0186361 Rosa chinensis HOM05D003472 ORTHO05D004200 9.5e-26 120.2 62 88.7
Prupe.5G126300 Prunus persica HOM05D003472 ORTHO05D004200 8.9e-24 113.6 98 58.2
CiPaw.11G115400 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.5e-23 112.8 62 82.3
CiPaw.11G115500 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.5e-23 112.8 62 82.3
CSS0008297 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.7e-22 109.4 62 79.0
CSS0021198 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.7e-22 109.4 62 79.0
CSS0029461 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.7e-22 109.4 62 79.0
CSS0044761 Camellia sinensis var. sinensis HOM05D003472 ORTHO05D004200 1.7e-22 109.4 62 79.0
CiPaw.12G079900 Carya illinoinensis HOM05D003472 ORTHO05D004200 1.7e-22 109.4 62 79.0
QL02p028420 Quercus lobata HOM05D003472 ORTHO05D004200 3.7e-22 108.2 62 79.0
Haze_09126 Corylus avellana HOM05D003472 ORTHO05D004200 8.3e-22 107.1 62 77.4
Haze_09134 Corylus avellana HOM05D003472 ORTHO05D004200 8.3e-22 107.1 62 77.4
vmacro22586 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.1e-21 106.7 91 56.0
Cfa011959 Carpinus fangiana HOM05D003472 ORTHO05D004200 1.4e-21 106.3 62 77.4
Eucgr.E01027 Eucalyptus grandis HOM05D003472 ORTHO05D004200 1.4e-21 106.3 90 57.8
TWI60G0599 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 3.1e-21 105.1 100 49.0
Sabra03G0104300 Salix brachista HOM05D003472 ORTHO05D004200 4.1e-21 104.8 91 53.8
QL02p028412 Quercus lobata HOM05D003472 ORTHO05D004200 5.4e-21 104.4 62 75.8
TWI60G0449 Tripterygium wilfordii HOM05D003472 ORTHO05D004200 7.0e-21 104.0 100 48.0
vmacro13868 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.2e-20 103.2 91 53.8
arahy.Tifrunner.gnm1.ann1.69PAS2 Arachis hypogaea HOM05D003472 ORTHO05D004200 1.6e-20 102.8 62 69.4
Manes.01G053600 Manihot esculenta HOM05D003472 ORTHO05D004200 1.6e-20 102.8 62 72.6
Thecc.03G305100 Theobroma cacao HOM05D003472 ORTHO05D004200 1.6e-20 102.8 91 52.7
TAR629G3421 Trochodendron aralioides HOM05D003472 ORTHO05D004200 1.6e-20 102.8 90 53.3
Aqoxy5G04304 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 2.0e-20 102.4 102 49.0
arahy.Tifrunner.gnm1.ann1.5YP9G9 Arachis hypogaea HOM05D003472 ORTHO05D004200 2.0e-20 102.4 62 69.4
Dinv06031 Davidia involucrata HOM05D003472 ORTHO05D004200 2.0e-20 102.4 62 72.6
Sc01g0010480 Simmondsia chinensis HOM05D003472 ORTHO05D004200 2.0e-20 102.4 62 72.6
Aqoxy5G04302 Aquilegia oxysepala HOM05D003472 ORTHO05D004200 2.7e-20 102.1 60 73.3
CANSAT21G0971 Cannabis sativa HOM05D003472 ORTHO05D004200 2.7e-20 102.1 96 53.1
DCAR_010023 Daucus carota HOM05D003472 ORTHO05D004200 2.7e-20 102.1 62 71.0
Nitab4.5_0006889g0030 Nicotiana tabacum HOM05D003472 ORTHO05D004200 3.5e-20 101.7 78 60.3
MSTRG.24856 Avicennia marina HOM05D003472 ORTHO05D004200 4.5e-20 101.3 93 49.5
Migut.I01165 Erythranthe guttata HOM05D003472 ORTHO05D004200 4.5e-20 101.3 62 69.4
Duzib205G0077 Durio zibethinus HOM05D003472 ORTHO05D004200 5.9e-20 100.9 62 71.0
Lalb_Chr05g0223881 Lupinus albus HOM05D003472 ORTHO05D004200 5.9e-20 100.9 62 69.4
Potri.003G143900 Populus trichocarpa HOM05D003472 ORTHO05D004200 5.9e-20 100.9 62 71.0
Sed0019208 Sechium edule HOM05D003472 ORTHO05D004200 5.9e-20 100.9 62 72.6
GSVIVG01019610001 Vitis vinifera HOM05D003472 ORTHO05D004200 5.9e-20 100.9 90 55.6
Gohir.A02G096900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 7.8e-20 100.5 62 71.0
Gohir.D03G086900 Gossypium hirsutum HOM05D003472 ORTHO05D004200 7.8e-20 100.5 62 71.0
Gorai.003G075200 Gossypium raimondii HOM05D003472 ORTHO05D004200 7.8e-20 100.5 62 71.0
Dinv02502 Davidia involucrata HOM05D003472 ORTHO05D004200 1.0e-19 100.1 62 71.0
Glyma.05G219800 Glycine max HOM05D003472 ORTHO05D004200 1.0e-19 100.1 62 67.7
Nn1g00321 Nelumbo nucifera HOM05D003472 ORTHO05D004200 1.0e-19 100.1 61 73.8
Thecc.03G304700 Theobroma cacao HOM05D003472 ORTHO05D004200 1.0e-19 100.1 62 71.0
Potri.003G144000 Populus trichocarpa HOM05D003472 ORTHO05D004200 1.3e-19 99.8 62 71.0
Sabra01G0063300 Salix brachista HOM05D003472 ORTHO05D004200 1.3e-19 99.8 62 71.0
Sabra03G0104400 Salix brachista HOM05D003472 ORTHO05D004200 1.3e-19 99.8 62 69.4
Manes.02G005400 Manihot esculenta HOM05D003472 ORTHO05D004200 1.7e-19 99.4 62 69.4
Potri.006G068300 Populus trichocarpa HOM05D003472 ORTHO05D004200 1.7e-19 99.4 62 71.0
MBI12_g15036_MAGBIO Magnolia biondii HOM05D003472 ORTHO05D004200 2.3e-19 99.0 60 73.3
Nitab4.5_0006889g0020 Nicotiana tabacum HOM05D003472 ORTHO05D004200 2.3e-19 99.0 62 69.4
Potri.001G087100 Populus trichocarpa HOM05D003472 ORTHO05D004200 2.3e-19 99.0 62 69.4
unitig_1.g29358 Utricularia gibba HOM05D003472 ORTHO05D004200 2.3e-19 99.0 70 61.4
Actinidia22188 Actinidia chinensis HOM05D003472 ORTHO05D004200 2.9e-19 98.6 62 69.4
MSTRG.24857 Avicennia marina HOM05D003472 ORTHO05D004200 2.9e-19 98.6 93 49.5
PGR042G1639 Punica granatum HOM05D003472 ORTHO05D004200 2.9e-19 98.6 62 69.4
ATR0757G010 Amborella trichopoda HOM05D003472 ORTHO05D004200 3.8e-19 98.2 87 54.0
ClCG01G001880 Citrullus lanatus HOM05D003472 ORTHO05D004200 3.8e-19 98.2 58 74.1
MELO3C005751.2 Cucumis melo HOM05D003472 ORTHO05D004200 3.8e-19 98.2 62 71.0
Gorai.007G020500 Gossypium raimondii HOM05D003472 ORTHO05D004200 3.8e-19 98.2 63 71.4
Nitab4.5_0002439g0080 Nicotiana tabacum HOM05D003472 ORTHO05D004200 3.8e-19 98.2 63 66.7
Peaxi162Scf00074g00435 Petunia axillaris HOM05D003472 ORTHO05D004200 3.8e-19 98.2 62 69.4
Ciclev10033306m.g Citrus clementina HOM05D003472 ORTHO05D004200 5.0e-19 97.8 61 67.2
Cc08_g16500 Coffea canephora HOM05D003472 ORTHO05D004200 5.0e-19 97.8 62 67.7
COL.COLO4_10760 Corchorus olitorius HOM05D003472 ORTHO05D004200 5.0e-19 97.8 91 50.5
Lj8C203G7 Lonicera japonica HOM05D003472 ORTHO05D004200 5.0e-19 97.8 62 66.1
Oeu009994.1 Olea europaea HOM05D003472 ORTHO05D004200 5.0e-19 97.8 62 69.4
PGR042G3552 Punica granatum HOM05D003472 ORTHO05D004200 5.0e-19 97.8 91 48.4
Rhsim08G0020400 Rhododendron simsii HOM05D003472 ORTHO05D004200 5.0e-19 97.8 62 71.0
Cpa.g.sc15.13 Carica papaya HOM05D003472 ORTHO05D004200 6.6e-19 97.4 62 67.7
unitig_747.g22055 Utricularia gibba HOM05D003472 ORTHO05D004200 6.6e-19 97.4 93 47.3
Lsat_1_v5_gn_3_12621 Lactuca sativa HOM05D003472 ORTHO05D004200 8.6e-19 97.1 91 52.7
PSO170G3423 Papaver somniferum HOM05D003472 ORTHO05D004200 8.6e-19 97.1 62 67.7
VMungo0251G0959 Vigna mungo HOM05D003472 ORTHO05D004200 8.6e-19 97.1 62 66.1
Ciclev10000621m.g Citrus clementina HOM05D003472 ORTHO05D004200 1.1e-18 96.7 61 67.2
CsaV3_5G002020 Cucumis sativus L. HOM05D003472 ORTHO05D004200 1.1e-18 96.7 62 71.0
Medtr8g099985 Medicago truncatula HOM05D003472 ORTHO05D004200 1.1e-18 96.7 62 66.1
Nitab4.5_0002439g0130 Nicotiana tabacum HOM05D003472 ORTHO05D004200 1.1e-18 96.7 62 67.7
SalBow6G0547 Salvia bowleyana HOM05D003472 ORTHO05D004200 1.1e-18 96.7 92 48.9
Ca_17451_v3 Cicer arietinum L. HOM05D003472 ORTHO05D004200 1.5e-18 96.3 62 66.1
Gohir.D11G019200 Gossypium hirsutum HOM05D003472 ORTHO05D004200 1.5e-18 96.3 62 71.0
PGR031G2218 Punica granatum HOM05D003472 ORTHO05D004200 1.5e-18 96.3 62 67.7
CDE07G1940 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 1.9e-18 95.9 62 64.5
Oeu009993.1 Olea europaea HOM05D003472 ORTHO05D004200 1.9e-18 95.9 60 70.0
CDE04G3265 Ceratophyllum demersum HOM05D003472 ORTHO05D004200 2.5e-18 95.5 62 64.5
ECA246G2504 Erigeron canadensis HOM05D003472 ORTHO05D004200 2.5e-18 95.5 62 67.7
Hma1.2p1_1835F.1_g304660 Hydrangea macrophylla HOM05D003472 ORTHO05D004200 2.5e-18 95.5 61 67.2
PGR031G0912 Punica granatum HOM05D003472 ORTHO05D004200 2.5e-18 95.5 62 67.7
Rhsim08G0015900 Rhododendron simsii HOM05D003472 ORTHO05D004200 2.5e-18 95.5 62 69.4
EL10Ac5g12473 Beta vulgaris HOM05D003472 ORTHO05D004200 4.3e-18 94.7 91 48.4
Gohir.A11G019500 Gossypium hirsutum HOM05D003472 ORTHO05D004200 4.3e-18 94.7 62 71.0
HanXRQChr06g0166301 Helianthus annuus HOM05D003472 ORTHO05D004200 4.3e-18 94.7 62 66.1
TPR.G3439 Trifolium pratense HOM05D003472 ORTHO05D004200 5.6e-18 94.4 62 64.5
vmacro09228 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 5.6e-18 94.4 62 69.4
CAN.G567.64 Capsicum annuum HOM05D003472 ORTHO05D004200 7.3e-18 94.0 60 68.3
AUR62007025 Chenopodium quinoa HOM05D003472 ORTHO05D004200 7.3e-18 94.0 61 65.6
Ciclev10023271m.g Citrus clementina HOM05D003472 ORTHO05D004200 7.3e-18 94.0 61 63.9
PGSC0003DMG400012252 Solanum tuberosum HOM05D003472 ORTHO05D004200 7.3e-18 94.0 62 62.9
Os10g0521000 Oryza sativa ssp. japonica HOM05D003472 ORTHO05D004200 9.5e-18 93.6 61 67.2
Ah.12g052970 Amaranthus hybridus HOM05D003472 ORTHO05D007906 1.2e-17 93.2 62 64.5
CAN.G567.65 Capsicum annuum HOM05D003472 ORTHO05D004200 1.2e-17 93.2 62 66.1
Rhsim02G0248900 Rhododendron simsii HOM05D003472 ORTHO05D004200 1.6e-17 92.8 61 70.5
vmacro11524 Vaccinium macrocarpon HOM05D003472 ORTHO05D004200 1.6e-17 92.8 60 68.3
Dinv23367 Davidia involucrata HOM05D003472 ORTHO05D004200 2.1e-17 92.4 61 67.2
THA.LOC104806447 Tarenaya hassleriana HOM05D003472 ORTHO05D004200 2.1e-17 92.4 96 47.9
CANSAT21G1016 Cannabis sativa HOM05D003472 ORTHO05D004200 2.8e-17 92.0 62 66.1
MD06G1113500 Malus domestica HOM05D003472 ORTHO05D004200 2.8e-17 92.0 60 68.3
Hund11368 Selenicereus undatus HOM05D003472 ORTHO05D004200 8.0e-17 90.5 90 45.6
Solyc08g082860.4 Solanum lycopersicum HOM05D003472 ORTHO05D004200 8.0e-17 90.5 62 59.7
Sopen08g031090 Solanum pennellii HOM05D003472 ORTHO05D004200 8.0e-17 90.5 62 59.7
Phvul.002G301500 Phaseolus vulgaris HOM05D003472 ORTHO05D004200 1.8e-16 89.4 62 59.7
HPP92_014452 Vanilla planifolia HOM05D003472 ORTHO05D004200 5.2e-16 87.8 61 62.3
MD14G1134600 Malus domestica HOM05D003472 ORTHO05D004200 8.9e-16 87.0 70 60.0
Carub.0007s1705 Capsella rubella HOM05D003472 ORTHO05D004200 1.5e-15 86.3 96 50.0
SGA_v2.0_scaffold198G41058 Striga asiatica HOM05D003472 ORTHO05D004200 3.4e-15 85.1 60 65.0
AL7G29240 Arabidopsis lyrata HOM05D003472 ORTHO05D004200 4.4e-15 84.7 96 47.9
BcaNung01109 Brassica carinata HOM05D003472 ORTHO05D004200 4.4e-15 84.7 96 47.9
SEGI_13496 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 5.8e-15 84.3 60 60.0
Mapoly0014s0133 Marchantia polymorpha HOM05D003472 ORTHO05D004200 9.8e-15 83.6 60 58.3
BcaNung05698 Brassica carinata HOM05D003472 ORTHO05D004200 1.3e-14 83.2 87 48.3
Cfa011954 Carpinus fangiana HOM05D003472 ORTHO05D016557 1.3e-14 83.2 51 76.5
Sp7g22010 Schrenkiella parvula HOM05D003472 ORTHO05D004200 4.9e-14 81.3 87 48.3
Thhalv10024684m.g Eutrema salsugineum HOM05D003472 ORTHO05D004200 6.4e-14 80.9 87 47.1
SEGI_01865 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 1.1e-13 80.1 60 56.7
AT4G24040 Arabidopsis thaliana HOM05D003472 ORTHO05D004200 1.4e-13 79.7 96 45.8
A03p54940 Brassica napus HOM05D003472 ORTHO05D004200 1.8e-13 79.3 62 54.8
BraA03t14559Z Brassica rapa HOM05D003472 ORTHO05D004200 1.8e-13 79.3 62 54.8
SEGI_04080 Sequoiadendron giganteum HOM05D003472 ORTHO05D004200 1.8e-13 79.3 61 57.4
EL10Ac1g01459 Beta vulgaris HOM05D003472 ORTHO05D039007 3.2e-13 78.6 99 40.4
BcaNung06470 Brassica carinata HOM05D003472 ORTHO05D004200 3.2e-13 78.6 62 54.8
C07p53330 Brassica napus HOM05D003472 ORTHO05D004200 3.2e-13 78.6 62 54.8
BolC7t45827H Brassica oleracea HOM05D003472 ORTHO05D004200 3.2e-13 78.6 62 54.8
Thecc.03G304400 Theobroma cacao HOM05D003472 ORTHO05D004200 4.1e-13 78.2 48 72.9
BcaC09g50919 Brassica carinata HOM05D003472 ORTHO05D004200 5.4e-13 77.8 96 42.7
C01p19260 Brassica napus HOM05D003472 ORTHO05D004200 5.4e-13 77.8 96 42.7
BolC1t01851H Brassica oleracea HOM05D003472 ORTHO05D004200 7.0e-13 77.4 96 42.7
A01p15310 Brassica napus HOM05D003472 ORTHO05D004200 1.2e-12 76.6 87 44.8
BraA01t01475Z Brassica rapa HOM05D003472 ORTHO05D004200 1.2e-12 76.6 87 44.8
Pp3c23_11240 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.2e-12 76.6 86 46.5
AagrBONN_evm.TU.Sc2ySwM_117.3367 Anthoceros agrestis HOM05D003472 ORTHO05D004200 3.5e-12 75.1 60 48.3
Mapoly0055s0045 Marchantia polymorpha HOM05D003472 ORTHO05D004200 6.0e-12 74.3 62 51.6
CARHR231440 Cardamine hirsuta HOM05D003472 ORTHO05D004200 1.0e-11 73.6 62 54.8
Pp3c24_9748 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.0e-11 73.6 90 37.8
Pp3c24_9750 Physcomitrium patens HOM05D003472 ORTHO05D004200 1.0e-11 73.6 90 37.8
SMO119G0122 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 2.3e-11 72.4 90 36.7
PRCOL_00003576 Prasinoderma coloniale HOM05D003472 ORTHO05D004200 8.6e-11 70.5 60 48.3
CBR_g24063 Chara braunii HOM05D003472 ORTHO05D004200 1.5e-10 69.7 60 51.7
Pp3c16_7830 Physcomitrium patens HOM05D003472 ORTHO05D004200 3.6e-09 65.1 90 36.7
Pp3c5_16470 Physcomitrium patens HOM05D003472 ORTHO05D004200 8.0e-09 63.9 61 45.9
SMO165G0094 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 8.9e-08 60.5 88 31.8
Thecc.03G304900 Theobroma cacao HOM05D003472 ORTHO05D004200 8.9e-08 60.5 40 65.0
SMO165G0115 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 3.4e-07 58.5 88 30.7
SMO272G0034 Selaginella moellendorffii HOM05D003472 ORTHO05D004200 3.4e-07 58.5 88 30.7


User provided reference genes

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