Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0261081 Rosa chinensis HOM05D000324 ORTHO05D346786 2.0e-29 131.7 64 100.0
RcHm_v2.0_Chr6g0262711 Rosa chinensis HOM05D000324 ORTHO05D014082 8.0e-15 83.2 47 87.2
RcHm_v2.0_Chr6g0261981 Rosa chinensis HOM05D000324 ORTHO05D001014 1.4e-11 72.4 70 57.1
FAN27G1953 Fragaria x ananassa HOM05D000324 ORTHO05D001014 1.2e-10 69.3 70 55.7
Hma1.2p1_0584F.1_g183320 Hydrangea macrophylla HOM05D000324 ORTHO05D001014 1.2e-10 69.3 70 55.7
Ciclev10027967m.g Citrus clementina HOM05D000324 ORTHO05D001014 1.6e-10 68.9 70 54.3
RcHm_v2.0_Chr6g0262871 Rosa chinensis HOM05D000324 ORTHO05D014082 2.0e-10 68.6 70 54.3
MELO3C021941.2 Cucumis melo HOM05D000324 ORTHO05D001014 2.7e-10 68.2 70 55.7
FvH4_2g07450 Fragaria vesca HOM05D000324 ORTHO05D001014 2.7e-10 68.2 70 54.3
FAN15G1460 Fragaria x ananassa HOM05D000324 ORTHO05D001014 2.7e-10 68.2 70 54.3
FAN20G0918 Fragaria x ananassa HOM05D000324 ORTHO05D001014 2.7e-10 68.2 70 54.3
Lj9C365T17 Lonicera japonica HOM05D000324 ORTHO05D001014 2.7e-10 68.2 62 59.7
RcHm_v2.0_Chr6g0262811 Rosa chinensis HOM05D000324 ORTHO05D014082 3.5e-10 67.8 69 55.1
Haze_02440 Corylus avellana HOM05D000324 ORTHO05D001014 4.6e-10 67.4 70 54.3
MD10G1085400 Malus domestica HOM05D000324 ORTHO05D001014 4.6e-10 67.4 70 55.7
Sed0000695 Sechium edule HOM05D000324 ORTHO05D001014 4.6e-10 67.4 70 55.7
Atru.chr5.2906 Acer truncatum HOM05D000324 ORTHO05D001014 6.0e-10 67.0 70 51.4
Dinv42103 Davidia involucrata HOM05D000324 ORTHO05D001014 6.0e-10 67.0 70 51.4
CiPaw.06G138800 Carya illinoinensis HOM05D000324 ORTHO05D001014 1.0e-09 66.2 70 52.9
ClCG09G017750 Citrullus lanatus HOM05D000324 ORTHO05D001014 1.0e-09 66.2 76 52.6
CsaV3_2G014350 Cucumis sativus L. HOM05D000324 ORTHO05D001014 1.3e-09 65.9 70 54.3
COL.COLO4_17786 Corchorus olitorius HOM05D000324 ORTHO05D001014 1.7e-09 65.5 70 52.9
Eucgr.G00490 Eucalyptus grandis HOM05D000324 ORTHO05D001014 2.3e-09 65.1 68 51.5
MD05G1070800 Malus domestica HOM05D000324 ORTHO05D001014 2.3e-09 65.1 70 52.9
TWI31G0169 Tripterygium wilfordii HOM05D000324 ORTHO05D001014 3.0e-09 64.7 70 51.4
EL10Ac9g21780 Beta vulgaris HOM05D000324 ORTHO05D001014 3.9e-09 64.3 69 52.2
Haze_02448 Corylus avellana HOM05D000324 ORTHO05D014082 3.9e-09 64.3 67 53.7
Glyma.12G047400 Glycine max HOM05D000324 ORTHO05D001014 3.9e-09 64.3 68 51.5
GSVIVG01031892001 Vitis vinifera HOM05D000324 ORTHO05D001014 3.9e-09 64.3 67 53.7
Solyc01g109180.4 Solanum lycopersicum HOM05D000324 ORTHO05D001014 5.0e-09 63.9 70 50.0
Sopen01g051380 Solanum pennellii HOM05D000324 ORTHO05D001014 5.0e-09 63.9 70 50.0
Actinidia00483 Actinidia chinensis HOM05D000324 ORTHO05D001014 6.6e-09 63.5 67 52.2
Gohir.A01G181500 Gossypium hirsutum HOM05D000324 ORTHO05D001014 6.6e-09 63.5 71 50.7
Oeu007233.1 Olea europaea HOM05D000324 ORTHO05D001014 6.6e-09 63.5 67 56.7
Prupe.8G108400 Prunus persica HOM05D000324 ORTHO05D001014 6.6e-09 63.5 70 52.9
RcHm_v2.0_Chr6g0261931 Rosa chinensis HOM05D000324 ORTHO05D014082 6.6e-09 63.5 71 52.1
PGSC0003DMG400025174 Solanum tuberosum HOM05D000324 ORTHO05D001014 6.6e-09 63.5 70 50.0
Thecc.02G029700 Theobroma cacao HOM05D000324 ORTHO05D001014 6.6e-09 63.5 70 52.9
DCAR_022082 Daucus carota HOM05D000324 ORTHO05D001014 8.6e-09 63.2 67 50.7
Phvul.011G049400 Phaseolus vulgaris HOM05D000324 ORTHO05D001014 8.6e-09 63.2 69 49.3
VMungo1127G1827 Vigna mungo HOM05D000324 ORTHO05D001014 8.6e-09 63.2 68 50.0
CAN.G322.95 Capsicum annuum HOM05D000324 ORTHO05D001014 1.1e-08 62.8 69 50.7
CAN.G322.98 Capsicum annuum HOM05D000324 ORTHO05D001014 1.5e-08 62.4 70 48.6
Glyma.11G122500 Glycine max HOM05D000324 ORTHO05D001014 1.5e-08 62.4 68 48.5
Nitab4.5_0003281g0070 Nicotiana tabacum HOM05D000324 ORTHO05D001014 1.5e-08 62.4 70 48.6
Psat6g097200 Pisum sativum HOM05D000324 ORTHO05D001014 1.5e-08 62.4 70 47.1
Potri.009G109900 Populus trichocarpa HOM05D000324 ORTHO05D001014 1.5e-08 62.4 69 52.2
RcHm_v2.0_Chr6g0261101 Rosa chinensis HOM05D000324 ORTHO05D014082 1.5e-08 62.4 70 51.4
Sabra09G0083900 Salix brachista HOM05D000324 ORTHO05D001014 1.5e-08 62.4 69 52.2
CANSAT25G2176 Cannabis sativa HOM05D000324 ORTHO05D001014 1.9e-08 62.0 69 49.3
Gohir.D01G172600 Gossypium hirsutum HOM05D000324 ORTHO05D001014 1.9e-08 62.0 70 50.0
Gorai.002G214200 Gossypium raimondii HOM05D000324 ORTHO05D001014 1.9e-08 62.0 70 50.0
Duzib052G0023 Durio zibethinus HOM05D000324 ORTHO05D001014 2.5e-08 61.6 70 51.4
Medtr4g068670 Medicago truncatula HOM05D000324 ORTHO05D001014 2.5e-08 61.6 68 48.5
RcHm_v2.0_Chr6g0261211 Rosa chinensis HOM05D000324 ORTHO05D014082 2.5e-08 61.6 70 50.0
RcHm_v2.0_Chr6g0261521 Rosa chinensis HOM05D000324 ORTHO05D001014 2.5e-08 61.6 67 52.2
TPR.G29897 Trifolium pratense HOM05D000324 ORTHO05D001014 2.5e-08 61.6 72 48.6
Cfa004961 Carpinus fangiana HOM05D000324 ORTHO05D001014 3.3e-08 61.2 70 50.0
Nitab4.5_0003816g0080 Nicotiana tabacum HOM05D000324 ORTHO05D001014 3.3e-08 61.2 70 47.1
arahy.Tifrunner.gnm1.ann1.HE7HHG Arachis hypogaea HOM05D000324 ORTHO05D001014 4.3e-08 60.8 69 49.3
AUR62011387 Chenopodium quinoa HOM05D000324 ORTHO05D001014 4.3e-08 60.8 68 48.5
Rhsim11G0171600 Rhododendron simsii HOM05D000324 ORTHO05D001014 4.3e-08 60.8 69 49.3
TAR381G0521 Trochodendron aralioides HOM05D000324 ORTHO05D001014 4.3e-08 60.8 70 48.6
arahy.Tifrunner.gnm1.ann1.ML01RA Arachis hypogaea HOM05D000324 ORTHO05D001014 5.6e-08 60.5 69 47.8
Ca_20829_v3 Cicer arietinum L. HOM05D000324 ORTHO05D001014 5.6e-08 60.5 68 48.5
Lj3g0003610 Lotus japonicus HOM05D000324 ORTHO05D001014 5.6e-08 60.5 68 48.5
SalBow6G5646 Salvia bowleyana HOM05D000324 ORTHO05D001014 5.6e-08 60.5 67 50.7
Hund06210 Selenicereus undatus HOM05D000324 ORTHO05D001014 5.6e-08 60.5 69 49.3
TPR.G18595 Trifolium pratense HOM05D000324 ORTHO05D001014 5.6e-08 60.5 69 47.8
Ca_12484_v3 Cicer arietinum L. HOM05D000324 ORTHO05D001014 7.3e-08 60.1 69 47.8
Ca_12485_v3 Cicer arietinum L. HOM05D000324 ORTHO05D001014 7.3e-08 60.1 69 47.8
MSTRG.20117 Avicennia marina HOM05D000324 ORTHO05D001014 9.5e-08 59.7 70 51.4
Medtr1g034360 Medicago truncatula HOM05D000324 ORTHO05D001014 9.5e-08 59.7 68 48.5
AUR62016673 Chenopodium quinoa HOM05D000324 ORTHO05D001014 1.2e-07 59.3 68 47.1
Cc02_g18100 Coffea canephora HOM05D000324 ORTHO05D001014 1.2e-07 59.3 72 47.2
Sc08g0000260 Simmondsia chinensis HOM05D000324 ORTHO05D001014 1.2e-07 59.3 69 47.8
arahy.Tifrunner.gnm1.ann1.4N44WU Arachis hypogaea HOM05D000324 ORTHO05D001014 1.6e-07 58.9 53 54.7
Manes.17G097400 Manihot esculenta HOM05D000324 ORTHO05D001014 1.6e-07 58.9 69 49.3
Psat7g206920 Pisum sativum HOM05D000324 ORTHO05D001014 1.6e-07 58.9 67 47.8
CSS0005243 Camellia sinensis var. sinensis HOM05D000324 ORTHO05D001014 2.1e-07 58.5 67 46.3
Lalb_Chr01g0002911 Lupinus albus HOM05D000324 ORTHO05D001014 2.1e-07 58.5 69 46.4
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 2.8e-07 58.2 67 46.3
Glyma.07G161900 Glycine max HOM05D000324 ORTHO05D001014 2.8e-07 58.2 69 47.8
PGR042G3038 Punica granatum HOM05D000324 ORTHO05D001014 2.8e-07 58.2 68 47.1
Migut.B00284 Erythranthe guttata HOM05D000324 ORTHO05D001014 3.6e-07 57.8 67 50.7
QL11p039566 Quercus lobata HOM05D000324 ORTHO05D001014 3.6e-07 57.8 69 47.8
RcHm_v2.0_Chr6g0261801 Rosa chinensis HOM05D000324 ORTHO05D014082 6.2e-07 57.0 73 49.3
VMungo1215G0426 Vigna mungo HOM05D000324 ORTHO05D001014 6.2e-07 57.0 69 46.4
MBI16_g20826_MAGBIO Magnolia biondii HOM05D000324 ORTHO05D001014 8.1e-07 56.6 67 47.8
Os11g0558300 Oryza sativa ssp. japonica HOM05D000324 ORTHO05D001014 8.1e-07 56.6 67 49.3
Peaxi162Scf00016g01142 Petunia axillaris HOM05D000324 ORTHO05D001014 1.1e-06 56.2 79 41.8
Glyma.20G007900 Glycine max HOM05D000324 ORTHO05D001014 1.8e-06 55.5 69 46.4
HanXRQChr10g0307531 Helianthus annuus HOM05D000324 ORTHO05D001014 1.8e-06 55.5 67 44.8
Phvul.003G010600 Phaseolus vulgaris HOM05D000324 ORTHO05D001014 1.8e-06 55.5 69 46.4
RcHm_v2.0_Chr6g0261671 Rosa chinensis HOM05D000324 ORTHO05D001014 1.8e-06 55.5 31 80.6
Lj2g0021043 Lotus japonicus HOM05D000324 ORTHO05D001014 2.3e-06 55.1 69 46.4
Lj2g0027114 Lotus japonicus HOM05D000324 ORTHO05D001014 2.3e-06 55.1 69 46.4
SGA_v2.0_scaffold55G19819 Striga asiatica HOM05D000324 ORTHO05D001014 2.3e-06 55.1 66 47.0
ATR0733G061 Amborella trichopoda HOM05D000324 ORTHO05D001014 3.1e-06 54.7 70 40.0
vmacro02154 Vaccinium macrocarpon HOM05D000324 ORTHO05D001014 3.1e-06 54.7 66 45.5
Cpa.g.sc62.90 Carica papaya HOM05D000324 ORTHO05D001014 4.0e-06 54.3 70 42.9
Aqoxy6G00962 Aquilegia oxysepala HOM05D000324 ORTHO05D001014 5.2e-06 53.9 70 42.9
arahy.Tifrunner.gnm1.ann1.H4N6W2 Arachis hypogaea HOM05D000324 ORTHO05D001014 6.8e-06 53.5 69 42.0
SHI05444 Sapria himalayana HOM05D000324 ORTHO05D001014 6.8e-06 53.5 70 44.3
SGA_v2.0_scaffold32G13133 Striga asiatica HOM05D000324 ORTHO05D001014 6.8e-06 53.5 66 51.5
PSO541G1571 Papaver somniferum HOM05D000324 ORTHO05D001014 8.9e-06 53.1 70 41.4
PSO675G0699 Papaver somniferum HOM05D000324 ORTHO05D001014 8.9e-06 53.1 70 41.4
RcHm_v2.0_Chr6g0261311 Rosa chinensis HOM05D000324 ORTHO05D343518 8.9e-06 53.1 26 92.3
unitig_21.g20767 Utricularia gibba HOM05D000324 ORTHO05D001014 8.9e-06 53.1 69 49.3


User provided reference genes

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