Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0254811 Rosa chinensis HOM05D006097 ORTHO05D020391 1.5e-46 189.1 95 100.0
RcHm_v2.0_Chr1g0324291 Rosa chinensis HOM05D006097 ORTHO05D008538 2.2e-24 115.5 57 98.2
FAN01G0546 Fragaria x ananassa HOM05D006097 ORTHO05D008538 3.1e-23 111.7 59 89.8
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 9.1e-23 110.2 57 91.2
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 1.2e-22 109.8 57 89.5
MD07G1040200 Malus domestica HOM05D006097 ORTHO05D008538 2.1e-19 99.0 57 82.5
TAR623G0702 Trochodendron aralioides HOM05D006097 ORTHO05D008538 2.1e-19 99.0 57 75.4
Haze_03039 Corylus avellana HOM05D006097 ORTHO05D008538 2.7e-19 98.6 57 75.4
Prupe.2G036100 Prunus persica HOM05D006097 ORTHO05D008538 2.7e-19 98.6 57 84.2
Nn2g14836 Nelumbo nucifera HOM05D006097 ORTHO05D008538 3.6e-19 98.2 57 71.9
Dinv22036 Davidia involucrata HOM05D006097 ORTHO05D008538 4.7e-19 97.8 56 76.8
Cfa010917 Carpinus fangiana HOM05D006097 ORTHO05D008538 8.0e-19 97.1 57 73.7
QL04p017855 Quercus lobata HOM05D006097 ORTHO05D008538 1.8e-18 95.9 57 75.4
CiPaw.14G007600 Carya illinoinensis HOM05D006097 ORTHO05D008538 3.0e-18 95.1 56 73.2
Duzib114G0946 Durio zibethinus HOM05D006097 ORTHO05D008538 4.0e-18 94.7 55 78.2
Thecc.10G154600 Theobroma cacao HOM05D006097 ORTHO05D008538 6.8e-18 94.0 53 79.2
CSS0004732 Camellia sinensis var. sinensis HOM05D006097 ORTHO05D008538 8.8e-18 93.6 56 71.4
COL.COLO4_20657 Corchorus olitorius HOM05D006097 ORTHO05D008538 1.2e-17 93.2 53 79.2
PGR031G1965 Punica granatum HOM05D006097 ORTHO05D008538 1.2e-17 93.2 57 75.4
GSVIVG01013488001 Vitis vinifera HOM05D006097 ORTHO05D008538 1.2e-17 93.2 55 76.4
Actinidia21518 Actinidia chinensis HOM05D006097 ORTHO05D008538 2.0e-17 92.4 55 70.9
Lsat_1_v5_gn_7_31901 Lactuca sativa HOM05D006097 ORTHO05D004880 2.0e-17 92.4 59 66.1
Manes.04G159300 Manihot esculenta HOM05D006097 ORTHO05D008538 2.6e-17 92.0 51 80.4
Sabra03G0146400 Salix brachista HOM05D006097 ORTHO05D008538 2.6e-17 92.0 59 69.5
Atru.chr7.628 Acer truncatum HOM05D006097 ORTHO05D008538 3.4e-17 91.7 57 75.4
Gorai.010G216200 Gossypium raimondii HOM05D006097 ORTHO05D008538 4.4e-17 91.3 57 73.7
Gohir.D06G184900 Gossypium hirsutum HOM05D006097 ORTHO05D008538 5.7e-17 90.9 54 75.9
THA.LOC104826726 Tarenaya hassleriana HOM05D006097 ORTHO05D008538 5.7e-17 90.9 57 73.7
QL04p017846 Quercus lobata HOM05D006097 ORTHO05D008538 7.5e-17 90.5 57 70.2
Gohir.A06G175000 Gossypium hirsutum HOM05D006097 ORTHO05D008538 9.8e-17 90.1 54 74.1
CANSAT56G2143 Cannabis sativa HOM05D006097 ORTHO05D008538 1.3e-16 89.7 57 71.9
Potri.003G196300 Populus trichocarpa HOM05D006097 ORTHO05D008538 1.7e-16 89.4 59 69.5
ATR0745G019 Amborella trichopoda HOM05D006097 ORTHO05D008538 2.8e-16 88.6 56 66.1
Cc02_g30220 Coffea canephora HOM05D006097 ORTHO05D008538 4.8e-16 87.8 56 71.4
Glyma.13G197200 Glycine max HOM05D006097 ORTHO05D008538 6.3e-16 87.4 55 69.1
PSO339G1331 Papaver somniferum HOM05D006097 ORTHO05D008538 6.3e-16 87.4 53 73.6
Glyma.15G235400 Glycine max HOM05D006097 ORTHO05D008538 1.1e-15 86.7 55 67.3
Psat5g221440 Pisum sativum HOM05D006097 ORTHO05D008538 1.1e-15 86.7 56 67.9
Ah.12g062830 Amaranthus hybridus HOM05D006097 ORTHO05D008538 1.4e-15 86.3 54 70.4
VMungo1127G1548 Vigna mungo HOM05D006097 ORTHO05D008538 1.8e-15 85.9 55 69.1
Sed0002543 Sechium edule HOM05D006097 ORTHO05D008538 2.4e-15 85.5 57 71.9
TPR.G17806 Trifolium pratense HOM05D006097 ORTHO05D008538 2.4e-15 85.5 57 66.7
ECA236G3136 Erigeron canadensis HOM05D006097 ORTHO05D008538 3.1e-15 85.1 57 68.4
Aqoxy2G00367 Aquilegia oxysepala HOM05D006097 ORTHO05D008538 4.1e-15 84.7 52 71.2
Phvul.011G206500 Phaseolus vulgaris HOM05D006097 ORTHO05D008538 4.1e-15 84.7 55 67.3
ClCG05G026810 Citrullus lanatus HOM05D006097 ORTHO05D008538 7.0e-15 84.0 57 64.9
Aa31LG10G10820 Aethionema arabicum HOM05D006097 ORTHO05D008538 1.2e-14 83.2 57 68.4
HanXRQChr04g0113861 Helianthus annuus HOM05D006097 ORTHO05D008538 1.2e-14 83.2 57 59.6
MELO3C012474.2 Cucumis melo HOM05D006097 ORTHO05D008538 2.0e-14 82.4 57 66.7
Lj3g0013868 Lotus japonicus HOM05D006097 ORTHO05D008538 2.0e-14 82.4 57 64.9
Oeu048573.1 Olea europaea HOM05D006097 ORTHO05D008538 2.0e-14 82.4 56 60.7
Ciclev10004623m.g Citrus clementina HOM05D006097 ORTHO05D008538 2.7e-14 82.0 53 69.8
Migut.N01845 Erythranthe guttata HOM05D006097 ORTHO05D008538 2.7e-14 82.0 56 64.3
Lalb_Chr19g0132421 Lupinus albus HOM05D006097 ORTHO05D008538 2.7e-14 82.0 56 60.7
Nitab4.5_0001621g0010 Nicotiana tabacum HOM05D006097 ORTHO05D008538 3.5e-14 81.6 54 72.2
Sp5g06630 Schrenkiella parvula HOM05D006097 ORTHO05D008538 3.5e-14 81.6 57 63.2
CARHR165960 Cardamine hirsuta HOM05D006097 ORTHO05D008538 4.5e-14 81.3 56 64.3
SEGI_19069 Sequoiadendron giganteum HOM05D006097 ORTHO05D008538 4.5e-14 81.3 56 62.5
CAN.G176.2 Capsicum annuum HOM05D006097 ORTHO05D008538 5.9e-14 80.9 54 72.2
AUR62032650 Chenopodium quinoa HOM05D006097 ORTHO05D008538 5.9e-14 80.9 55 63.6
Peaxi162Scf00767g00518 Petunia axillaris HOM05D006097 ORTHO05D008538 5.9e-14 80.9 55 70.9
SalBow6G4726 Salvia bowleyana HOM05D006097 ORTHO05D008538 5.9e-14 80.9 56 64.3
AUR62026861 Chenopodium quinoa HOM05D006097 ORTHO05D008538 7.7e-14 80.5 55 61.8
Carub.0005s2263 Capsella rubella HOM05D006097 ORTHO05D008538 1.0e-13 80.1 57 61.4
SGA_v2.0_scaffold232G43504 Striga asiatica HOM05D006097 ORTHO05D008538 1.0e-13 80.1 56 66.1
CDE06G0927 Ceratophyllum demersum HOM05D006097 ORTHO05D020391 1.7e-13 79.3 57 57.9
HPP92_013975 Vanilla planifolia HOM05D006097 ORTHO05D008538 1.7e-13 79.3 57 63.2
AL5G37140 Arabidopsis lyrata HOM05D006097 ORTHO05D008538 2.3e-13 79.0 56 64.3
CsaV3_5G036770 Cucumis sativus L. HOM05D006097 ORTHO05D008538 2.9e-13 78.6 57 64.9
Medtr3g014750 Medicago truncatula HOM05D006097 ORTHO05D008538 2.9e-13 78.6 57 63.2
BraA04t16135Z Brassica rapa HOM05D006097 ORTHO05D008538 6.5e-13 77.4 56 62.5
Os01g0952700 Oryza sativa ssp. japonica HOM05D006097 ORTHO05D008538 6.5e-13 77.4 55 61.8
BcaC02g09793 Brassica carinata HOM05D006097 ORTHO05D008538 8.6e-13 77.0 56 62.5
C04p36530 Brassica napus HOM05D006097 ORTHO05D008538 8.6e-13 77.0 56 62.5
BolC4t25143H Brassica oleracea HOM05D006097 ORTHO05D008538 8.6e-13 77.0 56 62.5
BcaB02g08396 Brassica carinata HOM05D006097 ORTHO05D008538 1.1e-12 76.6 56 62.5
Thhalv10010237m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 1.9e-12 75.9 56 58.9
Hund13358 Selenicereus undatus HOM05D006097 ORTHO05D008538 1.9e-12 75.9 55 56.4
Thhalv10010899m.g Eutrema salsugineum HOM05D006097 ORTHO05D008538 3.2e-12 75.1 56 58.9
Sopen08g005450 Solanum pennellii HOM05D006097 ORTHO05D008538 5.5e-12 74.3 54 66.7
A04p04190 Brassica napus HOM05D006097 ORTHO05D008538 7.2e-12 73.9 56 60.7
unitig_52.g17390 Utricularia gibba HOM05D006097 ORTHO05D008538 9.5e-12 73.6 58 63.8
FAN10G0529 Fragaria x ananassa HOM05D006097 ORTHO05D008538 8.0e-11 70.5 41 78.0
arahy.Tifrunner.gnm1.ann1.RMFD7W Arachis hypogaea HOM05D006097 ORTHO05D008538 1.0e-10 70.1 93 41.9
arahy.Tifrunner.gnm1.ann1.HF4B4K Arachis hypogaea HOM05D006097 ORTHO05D008538 4.0e-10 68.2 93 40.9
SMO367G1089 Selaginella moellendorffii HOM05D006097 ORTHO05D008538 5.7e-09 64.3 55 49.1
EL10Ac2g02801 Beta vulgaris HOM05D006097 ORTHO05D008538 7.5e-09 63.9 79 41.8
Pp3c20_1490 Physcomitrium patens HOM05D006097 ORTHO05D008538 7.5e-09 63.9 58 51.7
Haze_01792 Corylus avellana HOM05D000242 ORTHO05D000700 2.2e-08 62.4 34 76.5
Hma1.2p1_0269F.1_g107740 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 4.9e-08 61.2 34 76.5
Hma1.2p1_3244F.1_g334325 Hydrangea macrophylla HOM05D006097 ORTHO05D020391 4.9e-08 61.2 34 76.5
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 1.4e-07 59.7 39 64.1
DCAR_031243 Daucus carota HOM05D006097 ORTHO05D020391 3.5e-06 55.1 34 64.7
SEGI_33421 Sequoiadendron giganteum HOM05D006097 ORTHO05D020391 3.5e-06 55.1 33 72.7
Cre06.g279350 Chlamydomonas reinhardtii HOM05D006097 ORTHO05D008538 4.5e-06 54.7 46 47.8
AagrBONN_evm.TU.Sc2ySwM_340.253 Anthoceros agrestis HOM05D006097 ORTHO05D008538 5.9e-06 54.3 55 41.8
Mapoly0021s0162 Marchantia polymorpha HOM05D006097 ORTHO05D008538 5.9e-06 54.3 51 43.1


User provided reference genes

Program Settings