Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 3.8e-51 204.5 103 100.0
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-42 174.9 99 90.9
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 4.3e-42 174.5 99 89.9
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.2e-41 172.9 99 89.9
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.2e-41 172.9 99 89.9
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.1e-40 169.9 99 88.9
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-40 169.5 99 88.9
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 3.1e-40 168.3 99 87.9
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 4.4e-39 164.5 99 86.9
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 1.1e-37 159.8 99 79.8
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 1.1e-37 159.8 99 79.8
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 9.2e-37 156.8 99 77.8
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 9.2e-37 156.8 99 77.8
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 9.2e-37 156.8 99 77.8
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 9.2e-37 156.8 99 77.8
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 1.6e-36 156.0 99 76.8
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 1.0e-35 153.3 99 75.8
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.0e-35 153.3 99 75.8
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.0e-35 153.3 99 76.8
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.3e-35 152.9 99 75.8
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.3e-35 152.9 99 75.8
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.7e-35 152.5 99 75.8
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 2.3e-35 152.1 99 75.8
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 3.0e-35 151.8 93 79.6
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 3.9e-35 151.4 99 73.7
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 3.9e-35 151.4 99 75.8
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 5.1e-35 151.0 100 75.0
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 5.1e-35 151.0 99 75.8
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 6.6e-35 150.6 99 74.7
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 6.6e-35 150.6 99 73.7
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 6.6e-35 150.6 99 73.7
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 8.6e-35 150.2 93 77.4
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 8.6e-35 150.2 99 74.7
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 8.6e-35 150.2 99 72.7
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.1e-34 149.8 99 71.7
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.1e-34 149.8 100 75.0
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 1.1e-34 149.8 100 75.0
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.1e-34 149.8 99 72.7
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.5e-34 149.4 100 74.0
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.5e-34 149.4 100 75.0
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.5e-34 149.4 99 74.7
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 1.9e-34 149.1 99 73.7
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.9e-34 149.1 99 74.7
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 2.5e-34 148.7 99 70.7
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 2.5e-34 148.7 99 73.7
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 3.3e-34 148.3 100 77.0
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 3.3e-34 148.3 100 73.0
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 4.3e-34 147.9 99 73.7
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 5.6e-34 147.5 99 71.7
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 5.6e-34 147.5 99 73.7
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 5.6e-34 147.5 99 73.7
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 5.6e-34 147.5 99 73.7
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 5.6e-34 147.5 93 76.3
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 7.3e-34 147.1 99 72.7
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 9.5e-34 146.7 99 70.7
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 9.5e-34 146.7 99 72.7
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 1.2e-33 146.4 99 73.7
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.2e-33 146.4 100 72.0
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.2e-33 146.4 100 72.0
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 2.1e-33 145.6 99 73.7
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 2.8e-33 145.2 99 71.7
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 2.8e-33 145.2 99 71.7
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 3.6e-33 144.8 99 73.7
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 3.6e-33 144.8 100 75.0
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 3.6e-33 144.8 100 72.0
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 3.6e-33 144.8 100 72.0
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 6.2e-33 144.1 93 75.3
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 6.2e-33 144.1 99 71.7
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 8.1e-33 143.7 93 74.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 8.1e-33 143.7 100 71.0
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 1.1e-32 143.3 99 68.7
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.4e-32 142.9 99 68.7
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 3.1e-32 141.7 100 71.0
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 3.1e-32 141.7 93 75.3
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 4.0e-32 141.4 99 67.7
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 4.0e-32 141.4 93 75.3
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 6.8e-32 140.6 99 70.7
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 6.8e-32 140.6 99 70.7
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 6.8e-32 140.6 101 69.3
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 6.8e-32 140.6 99 71.7
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 6.8e-32 140.6 99 71.7
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.2e-31 139.8 100 69.0
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.2e-31 139.8 100 70.0
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 2.0e-31 139.0 93 72.0
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 4.4e-31 137.9 99 68.7
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.3e-30 136.3 93 71.0
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 4.9e-30 134.4 100 65.0
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 8.3e-30 133.7 99 62.6
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 1.4e-29 132.9 99 62.6
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.4e-29 132.9 100 69.0
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.4e-29 132.9 100 69.0
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.4e-29 132.1 99 61.6
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.4e-29 132.1 99 61.6
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 4.1e-29 131.3 100 68.0
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.2e-28 129.8 102 66.7
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.6e-28 129.4 100 62.0
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.6e-28 129.4 100 62.0
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 1.6e-28 129.4 100 63.0
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 1.6e-28 129.4 100 63.0
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 1.6e-28 129.4 100 63.0
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 1.6e-28 129.4 100 63.0
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 3.5e-28 128.3 101 66.3
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 4.6e-28 127.9 99 59.6
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 4.6e-28 127.9 100 62.0
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 6.0e-28 127.5 94 68.1
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 7.8e-28 127.1 100 62.0
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.2e-25 119.8 101 60.4
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 6.2e-25 117.5 68 88.2
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.1e-24 116.7 71 83.1
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 7.6e-23 110.5 95 60.0
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.2e-20 103.2 71 73.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 7.8e-20 100.5 67 74.6
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.5e-18 96.3 62 75.8
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.1e-16 90.1 95 50.5
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 1.1e-16 90.1 72 63.9
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.2e-12 76.6 50 76.0
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 2.1e-09 65.9 90 36.7
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 5.8e-07 57.8 38 65.8


User provided reference genes

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