Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 1.0e-218 763.1 384 100.0
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 6.7e-165 584.3 391 82.4
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 3.7e-163 578.6 396 81.3
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.4e-159 566.6 391 79.5
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.8e-157 559.7 391 78.8
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 8.5e-144 514.2 390 72.1
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 2.5e-140 502.7 391 71.1
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 2.3e-125 453.0 392 63.3
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 4.0e-125 452.2 396 63.9
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 6.7e-125 451.4 393 61.8
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.5e-124 450.3 389 62.0
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 9.7e-124 447.6 386 62.7
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 3.1e-122 442.6 389 62.0
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 4.1e-122 442.2 392 62.2
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 4.1e-122 442.2 389 62.0
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.0e-120 437.6 391 59.3
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.3e-120 437.2 392 61.5
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.3e-120 437.2 386 62.4
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 3.8e-120 435.6 391 60.6
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 5.0e-120 435.3 389 59.6
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 6.5e-120 434.9 393 60.8
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 8.5e-120 434.5 391 61.4
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.1e-119 434.1 274 79.2
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 1.1e-119 434.1 274 79.2
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.5e-119 433.7 274 79.2
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.9e-119 433.3 387 61.2
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.9e-119 433.3 395 58.5
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 3.2e-119 432.6 391 59.8
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 4.2e-119 432.2 389 59.9
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 4.2e-119 432.2 385 61.0
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 9.4e-119 431.0 387 61.8
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.6e-118 430.3 393 60.3
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 3.6e-118 429.1 387 61.0
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.4e-117 427.2 390 60.0
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 3.0e-117 426.0 390 59.0
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 4.0e-117 425.6 397 59.4
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 2.0e-116 423.3 361 62.3
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 2.6e-116 422.9 389 60.7
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 3.4e-116 422.5 389 59.4
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 4.4e-116 422.2 391 57.8
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.7e-115 420.2 393 60.3
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 3.7e-115 419.1 394 60.4
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 3.7e-115 419.1 366 62.6
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 6.3e-115 418.3 393 60.1
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 3.5e-113 412.5 391 57.5
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.8e-112 409.1 391 57.8
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 3.8e-112 409.1 391 55.2
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 8.5e-112 407.9 378 60.1
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 8.5e-112 407.9 387 58.9
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.1e-111 407.5 395 55.9
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.5e-111 407.1 366 61.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 9.5e-111 404.4 274 73.7
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 4.7e-110 402.1 392 57.4
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 8.0e-110 401.4 387 56.1
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.8e-109 400.2 375 55.7
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 4.0e-109 399.1 389 57.1
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 5.2e-109 398.7 387 56.3
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 6.8e-109 398.3 382 56.3
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.2e-108 397.5 378 57.4
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 2.0e-108 396.7 387 55.6
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 2.6e-108 396.4 382 55.5
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.6e-108 396.4 387 56.1
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 3.4e-108 396.0 393 55.2
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 3.4e-108 396.0 257 77.4
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 5.7e-108 395.2 391 53.7
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 7.5e-108 394.8 392 55.9
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 9.8e-108 394.4 389 56.3
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.7e-107 393.7 374 57.0
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.7e-107 393.7 379 56.7
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 1.7e-107 393.7 386 54.4
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 3.7e-107 392.5 366 57.4
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 1.8e-106 390.2 375 54.9
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 1.8e-106 390.2 382 55.5
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.8e-106 390.2 257 75.5
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 3.1e-106 389.4 392 56.1
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 5.4e-106 388.7 392 55.1
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 9.2e-106 387.9 306 64.7
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 1.2e-105 387.5 393 53.2
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 1.6e-105 387.1 382 53.4
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 2.7e-105 386.3 378 56.6
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 7.7e-105 384.8 377 54.1
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 1.3e-104 384.0 377 54.1
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 3.8e-104 382.5 394 53.0
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 3.8e-104 382.5 377 53.8
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 3.3e-103 379.4 395 51.4
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 5.6e-103 378.6 382 56.0
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.0e-101 374.4 377 53.8
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.5e-100 370.5 274 67.5
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.5e-100 370.5 391 54.5
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.6e-100 369.8 393 52.7
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 4.4e-100 369.0 393 52.9
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.7e-99 367.1 256 69.9
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 9.2e-98 361.3 352 59.9
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 1.2e-97 360.9 352 54.8
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 3.0e-96 356.3 271 65.7
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 8.6e-96 354.8 244 71.3
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 6.8e-93 345.1 344 54.4
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.6e-89 334.0 398 48.7
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.6e-89 334.0 267 61.8
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.7e-89 333.2 231 72.3
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.5e-87 327.4 379 50.4
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.9e-87 327.0 366 50.0
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 8.1e-86 321.6 276 58.0
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 4.6e-81 305.8 284 56.3
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 2.1e-78 297.0 247 61.5
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 3.9e-72 276.2 426 42.5
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-52 210.7 111 95.5
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 9.9e-52 208.4 185 60.5
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.9e-51 206.8 111 95.5
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-50 204.9 111 94.6
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 1.5e-47 194.5 158 63.9
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 3.3e-47 193.4 296 38.5
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-44 184.9 177 62.7
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 4.9e-43 179.5 110 79.1
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 9.6e-39 165.2 99 86.9
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 2.8e-38 163.7 277 35.4
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 2.2e-30 137.5 145 60.0
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 2.9e-27 127.1 69 94.2
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 5.5e-26 122.9 130 56.2
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.2e-25 121.7 134 50.0
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 4.6e-25 119.8 137 57.7
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 2.2e-19 100.9 302 28.8
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-13 81.6 40 100.0
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 4.5e-12 76.6 60 66.7
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 2.7e-09 67.4 40 82.5
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 7.5e-07 59.3 40 62.5


User provided reference genes

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