Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 5.1e-31 137.1 70 100.0
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 6.3e-29 130.2 69 95.7
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 6.3e-29 130.2 69 95.7
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 6.3e-29 130.2 69 95.7
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 6.3e-29 130.2 69 95.7
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 6.3e-29 130.2 69 95.7
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-28 128.6 69 94.2
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 5.3e-28 127.1 69 94.2
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 2.6e-27 124.8 69 92.8
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 4.5e-27 124.0 69 87.0
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 4.5e-27 124.0 69 88.4
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 4.5e-27 124.0 69 88.4
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 1.0e-26 122.9 69 87.0
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 1.0e-26 122.9 69 87.0
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.2e-26 121.7 69 84.1
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.2e-26 121.7 69 84.1
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 2.2e-26 121.7 69 84.1
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 3.8e-26 120.9 69 85.5
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 3.8e-26 120.9 69 85.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 5.0e-26 120.6 69 85.5
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 6.5e-26 120.2 68 85.3
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 6.5e-26 120.2 69 84.1
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 8.5e-26 119.8 69 84.1
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.1e-25 119.4 69 85.5
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 1.1e-25 119.4 69 85.5
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.1e-25 119.4 69 82.6
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 1.1e-25 119.4 69 84.1
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.4e-25 119.0 69 84.1
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.9e-25 118.6 68 85.3
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.9e-25 118.6 69 82.6
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.9e-25 118.6 69 84.1
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 2.5e-25 118.2 69 82.6
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 3.2e-25 117.9 69 82.6
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 3.2e-25 117.9 69 84.1
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 3.2e-25 117.9 69 84.1
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 3.2e-25 117.9 68 88.2
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.2e-25 117.9 69 82.6
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 5.5e-25 117.1 70 84.3
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 5.5e-25 117.1 69 81.2
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 7.2e-25 116.7 68 83.8
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 7.2e-25 116.7 69 81.2
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 7.2e-25 116.7 69 81.2
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 7.2e-25 116.7 69 82.6
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 9.4e-25 116.3 69 81.2
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 9.4e-25 116.3 69 84.1
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 9.4e-25 116.3 69 84.1
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 9.4e-25 116.3 69 84.1
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 9.4e-25 116.3 69 82.6
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 9.4e-25 116.3 68 80.9
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 9.4e-25 116.3 69 81.2
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 9.4e-25 116.3 70 84.3
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 9.4e-25 116.3 69 81.2
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 9.4e-25 116.3 69 82.6
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.2e-24 115.9 69 81.2
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 1.2e-24 115.9 68 82.4
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.2e-24 115.9 69 82.6
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.6e-24 115.5 68 82.4
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 1.6e-24 115.5 69 81.2
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 2.1e-24 115.2 69 81.2
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 2.1e-24 115.2 69 79.7
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 2.7e-24 114.8 69 81.2
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 2.7e-24 114.8 69 78.3
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.7e-24 114.8 69 81.2
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 4.7e-24 114.0 69 81.2
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 4.7e-24 114.0 68 82.4
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 4.7e-24 114.0 69 82.6
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 6.1e-24 113.6 69 78.3
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 7.9e-24 113.2 69 78.3
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 7.9e-24 113.2 69 81.2
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 7.9e-24 113.2 69 79.7
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 7.9e-24 113.2 69 79.7
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 7.9e-24 113.2 69 81.2
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.0e-23 112.8 70 78.6
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.0e-23 112.8 69 79.7
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.4e-23 112.5 69 76.8
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 1.8e-23 112.1 69 76.8
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 2.3e-23 111.7 69 76.8
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 2.3e-23 111.7 69 76.8
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 3.9e-23 110.9 68 73.5
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 5.1e-23 110.5 69 76.8
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 5.1e-23 110.5 68 77.9
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 5.1e-23 110.5 68 77.9
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 6.7e-23 110.2 68 72.1
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 6.7e-23 110.2 68 72.1
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 6.7e-23 110.2 69 75.4
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 6.7e-23 110.2 69 75.4
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 6.7e-23 110.2 67 80.6
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 8.8e-23 109.8 68 72.1
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 1.1e-22 109.4 68 72.1
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.1e-22 109.4 69 78.3
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.1e-22 109.4 69 78.3
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.5e-22 109.0 69 75.4
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.0e-22 108.6 69 72.5
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.6e-22 108.2 68 70.6
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 3.3e-22 107.8 68 72.1
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 3.3e-22 107.8 68 72.1
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 3.3e-22 107.8 68 72.1
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 3.3e-22 107.8 68 72.1
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 3.3e-22 107.8 68 72.1
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 4.4e-22 107.5 69 75.4
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 4.4e-22 107.5 70 78.6
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 4.4e-22 107.5 70 78.6
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 9.7e-22 106.3 68 70.6
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 9.7e-22 106.3 71 74.6
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 2.8e-21 104.8 68 69.1
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.8e-21 104.8 69 75.4
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 4.1e-20 100.9 67 74.6
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.4e-15 85.9 70 65.7
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 2.3e-15 85.1 46 89.1
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 8.8e-15 83.2 67 59.7
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 4.4e-14 80.9 70 57.1
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 4.8e-13 77.4 46 80.4
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.4e-12 75.9 46 80.4
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 2.6e-11 71.6 42 81.0
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 4.2e-09 64.3 37 83.8
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 2.0e-06 55.5 31 87.1


User provided reference genes

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