Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249911 Rosa chinensis HOM05D005117 ORTHO05D005956 9.6e-49 196.4 94 100.0
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 3.4e-30 134.8 72 91.7
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 3.4e-30 134.8 72 91.7
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 5.8e-30 134.0 72 90.3
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 5.1e-26 120.9 72 79.2
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.5e-25 119.4 72 76.4
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 2.5e-25 118.6 72 80.6
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 4.3e-25 117.9 71 77.5
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 5.6e-25 117.5 72 79.2
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 5.6e-25 117.5 72 76.4
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 7.4e-25 117.1 72 77.8
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 7.4e-25 117.1 72 76.4
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 7.4e-25 117.1 72 76.4
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 9.6e-25 116.7 72 79.2
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 9.6e-25 116.7 72 79.2
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 9.6e-25 116.7 72 79.2
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 9.6e-25 116.7 72 79.2
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 9.6e-25 116.7 72 79.2
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 9.6e-25 116.7 72 79.2
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 1.6e-24 115.9 71 74.6
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 1.6e-24 115.9 71 74.6
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.1e-24 115.5 71 77.5
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 2.1e-24 115.5 71 76.1
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 3.7e-24 114.8 72 77.8
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 3.7e-24 114.8 80 68.8
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 3.7e-24 114.8 72 75.0
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 3.7e-24 114.8 71 76.1
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 6.2e-24 114.0 71 73.2
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 6.2e-24 114.0 72 76.4
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 8.2e-24 113.6 72 77.8
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 8.2e-24 113.6 71 76.1
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.1e-23 113.2 71 74.6
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.1e-23 113.2 71 73.2
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 1.1e-23 113.2 72 72.2
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.1e-23 113.2 71 73.2
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 1.1e-23 113.2 72 72.2
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.1e-23 113.2 72 75.0
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 1.4e-23 112.8 72 75.0
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.4e-23 112.8 72 73.6
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.4e-23 112.8 71 73.2
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.4e-23 112.8 71 73.2
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.4e-23 112.8 72 73.6
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 1.4e-23 112.8 71 73.2
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.8e-23 112.5 71 74.6
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.8e-23 112.5 71 73.2
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 1.8e-23 112.5 71 73.2
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 1.8e-23 112.5 72 73.6
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.8e-23 112.5 72 73.6
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.8e-23 112.5 71 71.8
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.4e-23 112.1 80 65.0
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 2.4e-23 112.1 76 69.7
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 2.4e-23 112.1 71 74.6
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 3.1e-23 111.7 71 71.8
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.1e-23 111.7 71 71.8
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.1e-23 111.7 71 73.2
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 4.0e-23 111.3 72 70.8
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 4.0e-23 111.3 72 72.2
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 5.3e-23 110.9 72 70.8
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 5.3e-23 110.9 71 71.8
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 6.9e-23 110.5 71 73.2
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 6.9e-23 110.5 74 68.9
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 6.9e-23 110.5 71 71.8
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 6.9e-23 110.5 71 70.4
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 6.9e-23 110.5 71 71.8
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 6.9e-23 110.5 72 70.8
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 6.9e-23 110.5 71 71.8
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 9.0e-23 110.2 71 73.2
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.2e-22 109.8 71 70.4
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.2e-22 109.8 72 69.4
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.2e-22 109.8 71 69.0
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.2e-22 109.8 71 69.0
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 1.2e-22 109.8 71 71.8
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.5e-22 109.4 72 72.2
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.5e-22 109.4 71 71.8
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.5e-22 109.4 71 67.6
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 1.5e-22 109.4 71 71.8
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.0e-22 109.0 71 71.8
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 2.0e-22 109.0 71 70.4
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.6e-22 108.6 71 67.6
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 3.4e-22 108.2 71 71.8
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 3.4e-22 108.2 71 67.6
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 4.5e-22 107.8 71 69.0
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 5.8e-22 107.5 72 68.1
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 7.6e-22 107.1 68 73.5
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 2.9e-21 105.1 71 69.0
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 4.9e-21 104.4 71 67.6
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 1.4e-20 102.8 72 69.4
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 7.1e-20 100.5 71 63.4
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 7.1e-20 100.5 71 63.4
RcHm_v2.0_Chr6g0249871 Rosa chinensis HOM05D005117 ORTHO05D005956 4.6e-19 97.8 55 85.5
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 7.9e-19 97.1 73 65.8
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.0e-18 95.1 71 63.4
A06p32710 Brassica napus HOM05D005117 ORTHO05D005956 1.6e-16 89.4 82 57.3
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.2e-16 89.0 61 68.9
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 2.2e-16 89.0 71 62.0
BraA06t26200Z Brassica rapa HOM05D005117 ORTHO05D005956 6.3e-16 87.4 57 75.4
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.1e-15 86.7 78 55.1
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.8e-15 85.9 72 58.3
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 7.7e-14 80.5 50 74.0
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 1.0e-13 80.1 50 74.0
FAN27G2074 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.2e-11 73.2 36 94.4
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-10 69.7 32 96.9
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.3e-08 63.2 35 71.4
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.7e-08 62.8 32 81.2
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 3.1e-07 58.5 66 47.0


User provided reference genes

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