Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-122 443.0 222 100.0
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-113 412.5 216 96.3
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.5e-105 386.3 219 89.5
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.9e-103 379.4 219 88.1
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 4.1e-98 361.7 189 96.8
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 1.8e-90 336.3 216 80.6
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 9.1e-90 334.0 216 79.2
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 2.8e-75 285.8 224 66.1
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 6.3e-75 284.6 218 66.5
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.4e-74 283.5 219 68.0
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 9.1e-74 280.8 222 64.9
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.1e-71 273.9 217 68.2
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.5e-71 273.5 222 64.9
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 2.5e-71 272.7 227 65.2
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 5.5e-71 271.6 217 63.1
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 5.5e-71 271.6 222 62.6
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.6e-70 270.0 222 63.1
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.7e-70 269.2 217 68.2
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 6.1e-70 268.1 220 64.1
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 1.2e-68 263.8 229 63.8
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.2e-68 263.8 222 66.2
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 3.4e-68 262.3 218 66.1
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 2.2e-67 259.6 221 62.0
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 3.7e-67 258.8 217 61.8
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.4e-66 256.9 220 61.4
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 1.8e-66 256.5 220 59.5
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.4e-66 256.1 219 63.5
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 7.0e-66 254.6 218 65.1
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 7.0e-66 254.6 140 91.4
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.6e-65 253.4 217 62.2
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.6e-65 253.4 221 58.8
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 2.0e-65 253.1 219 58.9
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 4.5e-65 251.9 222 60.8
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 5.9e-65 251.5 223 60.1
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.0e-64 250.8 222 60.8
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.7e-64 250.0 220 60.9
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 2.9e-64 249.2 220 60.9
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 3.8e-64 248.8 224 61.6
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 5.0e-64 248.4 225 60.0
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 1.1e-63 247.3 210 63.3
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.5e-63 246.9 226 61.5
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 2.5e-63 246.1 222 60.8
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 4.2e-63 245.4 225 60.4
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 4.2e-63 245.4 220 60.5
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 5.5e-63 245.0 222 59.9
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 3.6e-62 242.3 222 59.5
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 6.1e-62 241.5 219 62.1
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 6.1e-62 241.5 222 58.1
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.0e-61 240.7 219 57.5
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.3e-61 239.6 220 58.2
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.3e-61 239.6 226 59.7
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 3.0e-61 239.2 223 59.6
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 6.8e-61 238.0 217 62.2
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 6.8e-61 238.0 217 62.2
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 6.8e-61 238.0 253 52.6
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 8.8e-61 237.7 217 62.7
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 8.8e-61 237.7 222 57.7
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.2e-60 237.3 222 57.7
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 2.6e-60 236.1 219 58.0
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 2.6e-60 236.1 227 59.5
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 2.6e-60 236.1 219 59.8
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 7.5e-60 234.6 219 57.5
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 7.5e-60 234.6 219 57.1
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 7.5e-60 234.6 220 57.3
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 2.8e-59 232.6 220 55.0
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.8e-59 232.6 219 56.2
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 3.7e-59 232.3 218 57.8
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 3.7e-59 232.3 222 57.2
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 6.3e-59 231.5 130 91.5
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 8.3e-59 231.1 216 54.6
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 8.3e-59 231.1 218 55.5
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.1e-58 230.7 220 56.8
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.1e-58 230.7 222 55.9
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 1.8e-58 229.9 218 54.1
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 2.4e-58 229.6 219 56.6
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 3.1e-58 229.2 218 53.7
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 3.1e-58 229.2 218 53.7
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 7.0e-58 228.0 221 54.8
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 9.2e-58 227.6 222 55.0
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 4.5e-57 225.3 220 55.9
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 5.9e-57 224.9 209 61.7
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 7.7e-57 224.6 222 56.3
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.0e-56 224.2 218 56.4
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 2.3e-56 223.0 220 54.5
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.1e-55 220.7 219 54.3
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 5.6e-55 218.4 222 54.5
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 7.3e-55 218.0 220 53.2
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 7.3e-55 218.0 223 52.9
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.6e-54 216.9 220 56.4
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 3.6e-54 215.7 221 52.9
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-53 213.4 130 86.9
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 1.7e-51 206.8 306 44.1
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 8.3e-51 204.5 220 51.8
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 5.4e-50 201.8 219 49.3
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 5.4e-50 201.8 219 48.9
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 1.1e-47 194.1 197 52.8
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 6.8e-45 184.9 220 45.9
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 1.3e-43 180.6 98 92.9
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 3.7e-43 179.1 143 66.4
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 7.0e-42 174.9 222 48.2
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 4.6e-41 172.2 226 45.1
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.2e-38 164.1 119 65.5
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 6.2e-38 161.8 221 44.3
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 2.0e-36 156.8 172 53.5
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 7.5e-36 154.8 191 45.5
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 3.2e-34 149.4 221 41.6
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.3e-32 143.3 221 43.0
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.5e-31 140.6 272 34.6
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 4.7e-30 135.6 145 60.0
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 4.6e-25 119.0 56 100.0
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 6.2e-22 108.6 223 34.5
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 5.1e-16 89.0 40 100.0
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 8.7e-16 88.2 42 92.9
CDE05G1587 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 3.6e-14 82.8 146 39.7
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 2.6e-12 76.6 214 32.2
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-11 73.9 46 76.1
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 6.7e-08 62.0 28 96.4


User provided reference genes

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