Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 9.5e-56 219.9 111 100.0
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 2.4e-54 215.3 111 98.2
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 6.8e-54 213.8 111 96.4
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 8.9e-54 213.4 111 97.3
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 8.9e-54 213.4 111 97.3
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.6e-53 210.3 111 96.4
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 6.4e-52 207.2 111 94.6
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 3.2e-51 204.9 111 94.6
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 4.6e-50 201.1 111 90.1
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 1.3e-49 199.5 111 89.2
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.5e-48 196.1 111 85.6
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.5e-48 196.1 111 85.6
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 1.5e-48 196.1 111 85.6
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.3e-48 194.9 110 87.3
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 3.3e-48 194.9 111 85.6
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 1.2e-47 193.0 111 82.0
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.2e-47 193.0 111 85.6
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 2.8e-47 191.8 111 83.8
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 2.8e-47 191.8 111 83.8
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 2.8e-47 191.8 111 82.9
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 6.2e-47 190.7 111 83.8
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 8.1e-47 190.3 111 82.9
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 8.1e-47 190.3 111 82.9
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 1.1e-46 189.9 111 81.1
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.4e-46 189.5 111 84.7
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.4e-46 189.5 111 82.0
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.4e-46 189.5 111 82.0
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.8e-46 189.1 111 83.8
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.8e-46 189.1 111 83.8
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.4e-46 188.7 111 82.9
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 2.4e-46 188.7 111 82.0
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 3.1e-46 188.3 111 84.7
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 3.1e-46 188.3 111 84.7
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 3.1e-46 188.3 111 83.8
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 3.1e-46 188.3 110 84.5
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 4.0e-46 188.0 111 83.8
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 5.2e-46 187.6 111 82.0
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 5.2e-46 187.6 111 82.0
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 6.9e-46 187.2 111 82.9
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 6.9e-46 187.2 111 82.9
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 6.9e-46 187.2 111 82.9
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 9.0e-46 186.8 111 83.8
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 9.0e-46 186.8 111 82.9
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.2e-45 186.4 111 80.2
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.2e-45 186.4 111 81.1
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.2e-45 186.4 111 83.8
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.5e-45 186.0 111 82.0
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.5e-45 186.0 111 81.1
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 2.0e-45 185.7 111 82.0
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 2.0e-45 185.7 111 82.0
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 2.6e-45 185.3 111 78.4
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 3.4e-45 184.9 111 81.1
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 3.4e-45 184.9 111 79.3
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 5.8e-45 184.1 111 80.2
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 5.8e-45 184.1 111 80.2
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 9.9e-45 183.3 111 81.1
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 9.9e-45 183.3 110 81.8
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.3e-44 183.0 111 80.2
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 1.3e-44 183.0 112 82.1
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.3e-44 183.0 111 81.1
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.3e-44 183.0 111 81.1
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.7e-44 182.6 109 81.7
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.7e-44 182.6 109 81.7
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.7e-44 182.6 111 78.4
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 2.2e-44 182.2 111 82.0
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.9e-44 181.8 111 80.2
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 3.8e-44 181.4 111 76.6
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 8.4e-44 180.3 111 81.1
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 8.4e-44 180.3 111 81.1
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 1.4e-43 179.5 111 75.7
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.4e-43 179.5 111 79.3
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.9e-43 179.1 111 78.4
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 5.4e-43 177.6 105 81.0
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 1.2e-42 176.4 110 78.2
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.6e-42 176.0 110 77.3
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 2.1e-42 175.6 112 76.8
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 2.1e-42 175.6 111 76.6
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 2.1e-42 175.6 111 76.6
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-42 174.9 99 89.9
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 6.0e-42 174.1 111 76.6
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.7e-41 172.6 101 85.1
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 3.9e-41 171.4 112 71.4
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 3.9e-41 171.4 112 75.0
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 5.1e-41 171.0 112 77.7
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 5.1e-41 171.0 112 77.7
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 6.6e-41 170.6 111 71.2
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 1.1e-40 169.9 111 70.3
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 1.5e-40 169.5 111 69.4
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.5e-40 169.5 103 79.6
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 7.3e-40 167.2 111 69.4
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 9.6e-40 166.8 112 69.6
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 9.6e-40 166.8 112 69.6
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 9.6e-40 166.8 112 70.5
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 9.6e-40 166.8 112 70.5
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 9.6e-40 166.8 112 70.5
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 9.6e-40 166.8 112 70.5
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.6e-39 166.0 111 69.4
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 2.1e-39 165.6 104 77.9
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 2.8e-39 165.2 112 69.6
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 4.8e-39 164.5 112 69.6
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 6.2e-39 164.1 113 72.6
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 4.0e-38 161.4 112 71.4
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 6.9e-38 160.6 112 71.4
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 4.5e-37 157.9 95 82.1
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 2.2e-36 155.6 106 75.5
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 2.9e-36 155.2 110 70.0
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.1e-35 153.3 112 68.8
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 9.9e-29 130.2 69 95.7
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 4.2e-27 124.8 71 85.9
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 2.3e-25 119.0 95 63.2
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.8e-23 112.1 71 78.9
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 2.0e-21 105.9 99 54.5
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 2.6e-21 105.5 67 76.1
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.1e-19 100.1 62 79.0
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 4.2e-19 98.2 72 66.7
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 1.1e-14 83.6 106 37.7
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.2e-13 80.1 50 80.0
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-12 76.3 40 95.0
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 2.1e-10 69.3 98 43.9
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 2.1e-10 69.3 41 82.9
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 5.7e-08 61.2 38 71.1
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 2.2e-07 59.3 41 63.4


User provided reference genes

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