Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249761 Rosa chinensis HOM05D005117 ORTHO05D005956 3.4e-46 188.0 93 100.0
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-35 152.9 83 90.4
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 4.6e-35 151.0 83 88.0
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 4.6e-35 151.0 83 88.0
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 7.8e-35 150.2 83 88.0
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 4.3e-33 144.4 83 84.3
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 4.3e-33 144.4 83 83.1
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 4.7e-32 141.0 83 86.7
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 6.2e-32 140.6 84 81.0
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 8.1e-32 140.2 89 73.0
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.1e-31 139.8 82 81.7
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.8e-31 139.0 83 81.9
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 1.8e-31 139.0 83 79.5
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 2.3e-31 138.7 82 80.5
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 4.0e-31 137.9 83 79.5
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 1.2e-30 136.3 82 79.3
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.2e-30 136.3 83 78.3
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.2e-30 136.3 82 76.8
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 1.5e-30 136.0 83 75.9
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.5e-30 136.0 83 79.5
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 2.0e-30 135.6 82 80.5
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 2.0e-30 135.6 83 75.9
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 2.6e-30 135.2 85 75.3
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 2.6e-30 135.2 87 72.4
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.6e-30 135.2 82 76.8
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 2.6e-30 135.2 83 79.5
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.6e-30 135.2 87 75.9
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.6e-30 135.2 89 73.0
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 3.4e-30 134.8 87 72.4
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 4.4e-30 134.4 83 77.1
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 5.8e-30 134.0 83 78.3
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 5.8e-30 134.0 83 78.3
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 5.8e-30 134.0 87 73.6
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 9.8e-30 133.3 83 75.9
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 9.8e-30 133.3 83 77.1
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 9.8e-30 133.3 87 73.6
Atru.chr13.2569 Acer truncatum HOM05D005117 ORTHO05D005956 1.3e-29 132.9 83 74.7
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 1.3e-29 132.9 82 76.8
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.3e-29 132.9 83 77.1
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.3e-29 132.9 87 73.6
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.7e-29 132.5 85 75.3
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 2.2e-29 132.1 87 73.6
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 3.7e-29 131.3 83 75.9
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 3.7e-29 131.3 82 78.0
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 3.7e-29 131.3 87 74.7
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 4.9e-29 131.0 87 74.7
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 4.9e-29 131.0 87 72.4
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 4.9e-29 131.0 85 72.9
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 4.9e-29 131.0 83 75.9
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 6.4e-29 130.6 86 73.3
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 6.4e-29 130.6 83 75.9
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 8.3e-29 130.2 83 74.7
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 8.3e-29 130.2 82 76.8
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 8.3e-29 130.2 83 75.9
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 8.3e-29 130.2 83 74.7
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 8.3e-29 130.2 82 73.2
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 8.3e-29 130.2 86 74.4
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 1.1e-28 129.8 83 75.9
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.1e-28 129.8 82 75.6
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 1.1e-28 129.8 83 74.7
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.1e-28 129.8 83 74.7
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.4e-28 129.4 83 74.7
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 1.4e-28 129.4 83 77.1
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 1.4e-28 129.4 87 73.6
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.9e-28 129.0 83 74.7
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.4e-28 128.6 82 76.8
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 2.4e-28 128.6 83 74.7
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.4e-28 128.6 82 76.8
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 3.2e-28 128.3 81 76.5
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 3.2e-28 128.3 81 75.3
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 5.4e-28 127.5 87 71.3
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 5.4e-28 127.5 87 71.3
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 5.4e-28 127.5 87 70.1
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 5.4e-28 127.5 83 75.9
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 7.1e-28 127.1 87 71.3
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 9.2e-28 126.7 87 70.1
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 9.2e-28 126.7 87 70.1
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 9.2e-28 126.7 82 72.0
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.2e-27 126.3 82 73.2
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 2.1e-27 125.6 82 75.6
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 2.1e-27 125.6 87 70.1
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 2.1e-27 125.6 83 74.7
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 2.1e-27 125.6 87 70.1
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.7e-27 125.2 87 69.0
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 2.7e-27 125.2 87 70.1
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.7e-27 125.2 83 72.3
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 4.6e-27 124.4 87 70.1
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 4.6e-27 124.4 86 68.6
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.0e-26 123.2 83 69.9
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 1.3e-26 122.9 76 77.6
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.3e-26 122.9 87 67.8
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 5.1e-26 120.9 69 88.4
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 6.6e-26 120.6 87 67.8
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.1e-25 119.8 87 67.8
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 3.3e-25 118.2 87 65.5
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 5.6e-25 117.5 66 86.4
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 9.5e-25 116.7 77 75.3
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 4.7e-24 114.4 66 84.8
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 2.3e-23 112.1 86 61.6
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 6.8e-23 110.5 83 66.3
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.6e-22 108.6 87 63.2
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 8.4e-21 103.6 70 68.6
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 2.8e-16 88.6 51 80.4
SHI04054 Sapria himalayana HOM05D005117 ORTHO05D005956 6.8e-15 84.0 50 76.0
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.3e-13 79.7 88 45.5
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.3e-13 79.7 47 74.5


User provided reference genes

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