Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 2.3e-213 745.3 383 100.0
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-199 699.5 384 94.5
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.3e-192 676.4 387 91.5
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 5.4e-191 671.0 387 91.0
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 7.3e-180 634.0 383 84.6
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 4.4e-177 624.8 384 83.9
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 2.0e-161 572.8 396 81.3
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 3.5e-158 562.0 382 74.1
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 7.9e-158 560.8 382 73.8
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.1e-156 557.0 383 74.2
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 9.6e-156 553.9 385 74.8
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 1.2e-153 547.0 384 71.9
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 7.6e-153 544.3 374 73.5
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.0e-152 543.9 384 70.1
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 2.2e-152 542.7 380 73.9
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 2.9e-152 542.3 384 71.6
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 1.1e-151 540.4 380 72.9
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.4e-151 540.0 384 72.7
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.4e-151 540.0 380 72.6
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 3.2e-151 538.9 382 72.3
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 3.2e-151 538.9 382 72.3
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 5.5e-151 538.1 382 71.7
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 7.1e-151 537.7 384 69.3
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.6e-150 536.6 378 72.8
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.6e-150 536.6 384 70.8
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 2.1e-150 536.2 383 70.5
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 2.7e-150 535.8 386 71.2
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 2.7e-150 535.8 382 71.7
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.3e-149 533.5 378 71.7
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.0e-149 532.3 378 71.4
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.1e-148 530.4 382 69.9
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 2.5e-148 529.3 381 72.7
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 2.5e-148 529.3 382 68.8
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.6e-147 526.6 384 68.8
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 1.6e-147 526.6 380 72.6
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 1.6e-147 526.6 380 72.6
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.6e-147 526.6 382 69.6
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 2.1e-147 526.2 384 71.1
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.8e-147 525.8 380 72.9
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 3.7e-147 525.4 386 68.7
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 6.2e-147 524.6 383 70.0
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.3e-144 516.9 386 69.7
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.2e-144 516.2 378 70.6
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.9e-144 515.8 385 67.5
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.1e-143 513.8 376 70.2
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 3.2e-143 512.3 387 69.3
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 4.2e-143 511.9 386 68.9
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 3.5e-142 508.8 359 71.9
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 4.6e-142 508.4 371 70.1
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 3.9e-141 505.4 383 66.8
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 6.7e-141 504.6 367 68.9
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 8.7e-141 504.2 385 66.8
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 3.3e-140 502.3 382 64.7
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 7.4e-140 501.1 375 67.2
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 9.7e-140 500.7 379 67.5
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 2.2e-139 499.6 369 68.6
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.8e-138 496.5 384 65.9
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 4.1e-138 495.4 384 66.1
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 6.9e-138 494.6 370 68.6
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 2.6e-137 492.7 386 65.5
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 2.6e-137 492.7 364 68.7
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 2.6e-137 492.7 384 65.4
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 5.9e-137 491.5 386 62.7
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 5.9e-137 491.5 384 65.9
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 7.7e-137 491.1 375 64.5
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 7.7e-137 491.1 377 64.7
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 7.7e-137 491.1 354 68.9
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 1.3e-136 490.3 384 65.9
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 1.7e-136 490.0 370 64.3
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.7e-136 490.0 379 66.2
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 2.2e-136 489.6 386 65.3
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 2.9e-136 489.2 370 64.3
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 3.8e-136 488.8 380 66.1
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 8.5e-136 487.6 370 64.1
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 1.1e-135 487.3 386 64.8
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 1.1e-135 487.3 384 62.0
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 1.9e-135 486.5 387 62.5
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 2.5e-135 486.1 379 63.1
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 4.6e-134 481.9 377 63.1
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 6.1e-134 481.5 387 62.0
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 2.3e-133 479.6 375 62.1
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 5.1e-133 478.4 375 63.5
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 2.4e-130 469.5 369 66.7
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 2.6e-129 466.1 377 63.4
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 7.7e-129 464.5 342 67.8
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.0e-128 464.2 384 62.2
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 1.3e-128 463.8 360 65.8
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.9e-128 462.6 384 62.5
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 1.6e-126 456.8 355 65.9
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 2.7e-126 456.1 345 71.0
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 8.8e-125 451.1 490 52.2
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 1.0e-117 427.6 355 62.8
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.7e-115 419.1 388 58.5
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.7e-112 410.2 366 59.3
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 1.5e-111 407.1 344 61.9
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 4.4e-108 395.6 374 54.3
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 3.7e-107 392.5 386 56.0
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 6.3e-107 391.7 257 77.0
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 1.4e-106 390.6 321 63.2
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.7e-105 386.3 257 75.5
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 8.5e-104 381.3 415 52.0
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 1.4e-101 374.0 381 53.8
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 9.8e-100 367.9 336 56.8
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 2.0e-97 360.1 256 69.5
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 2.9e-96 356.3 244 71.3
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 3.5e-89 332.8 231 71.9
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-78 297.4 165 92.1
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 4.1e-66 256.1 345 42.6
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-65 253.4 140 91.4
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-58 231.1 130 90.8
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 4.0e-53 213.0 335 38.5
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 4.0e-53 213.0 130 86.2
PSO541G0924 Papaver somniferum HOM05D005117 ORTHO05D005956 1.5e-52 211.1 184 60.9
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.2e-51 207.2 111 95.5
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 8.4e-51 205.3 111 94.6
Zm00001eb084470 Zea mays HOM05D005117 ORTHO05D005956 1.4e-50 204.5 158 66.5
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 3.5e-49 199.9 111 92.8
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 3.8e-43 179.9 110 79.1
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 3.9e-40 169.9 131 69.5
RcHm_v2.0_Chr6g0250321 Rosa chinensis HOM05D005117 ORTHO05D005956 1.9e-39 167.5 99 87.9
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 1.4e-34 151.4 127 61.4
RcHm_v2.0_Chr6g0249981 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-27 127.9 69 94.2
Rhsim03G0007800 Rhododendron simsii HOM05D000003 ORTHO05D005956 1.9e-26 124.4 134 50.7
Cfa026610 Carpinus fangiana HOM05D005117 ORTHO05D005956 3.3e-23 113.6 399 27.1
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 9.7e-15 85.5 42 90.5
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.1e-13 82.0 92 52.2
Rhsim09G0011400 Rhododendron simsii HOM05D005117 ORTHO05D005956 5.3e-13 79.7 50 78.0
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 2.6e-12 77.4 46 84.8
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 1.4e-08 65.1 41 78.0
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 1.7e-06 58.2 41 61.0


User provided reference genes

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