Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249261 Rosa chinensis HOM05D005117 ORTHO05D005956 5.5e-21 103.2 47 100.0
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 6.1e-12 73.2 46 76.1
RcHm_v2.0_Chr6g0250151 Rosa chinensis HOM05D005117 ORTHO05D005956 6.1e-12 73.2 46 76.1
RcHm_v2.0_Chr6g0250001 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-11 71.6 32 100.0
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.8e-11 71.6 46 73.9
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 2.3e-11 71.2 46 73.9
RcHm_v2.0_Chr6g0249861 Rosa chinensis HOM05D005117 ORTHO05D005956 4.0e-11 70.5 46 73.9
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.2e-10 68.9 31 100.0
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 8.3e-09 62.8 46 67.4
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.1e-08 62.4 32 87.5
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 1.1e-08 62.4 46 67.4
RcHm_v2.0_Chr6g0250221 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-08 62.0 28 96.4
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 2.4e-08 61.2 46 65.2
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 3.1e-08 60.8 46 65.2
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 3.1e-08 60.8 46 65.2
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 3.1e-08 60.8 46 65.2
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 4.1e-08 60.5 46 67.4
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 4.1e-08 60.5 46 65.2
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 5.4e-08 60.1 46 63.0
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 5.4e-08 60.1 46 65.2
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 5.4e-08 60.1 41 70.7
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 5.4e-08 60.1 41 70.7
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 5.4e-08 60.1 41 70.7
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 5.4e-08 60.1 41 65.9
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 5.4e-08 60.1 46 63.0
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 7.0e-08 59.7 41 70.7
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 7.0e-08 59.7 41 68.3
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 7.0e-08 59.7 46 63.0
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 7.0e-08 59.7 32 84.4
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 7.0e-08 59.7 32 84.4
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 7.0e-08 59.7 46 65.2
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 1.2e-07 58.9 32 81.2
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.2e-07 58.9 46 63.0
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.6e-07 58.5 41 68.3
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 1.6e-07 58.5 46 63.0
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 1.6e-07 58.5 46 63.0
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.6e-07 58.5 46 60.9
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.6e-07 58.5 46 58.7
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 1.6e-07 58.5 32 81.2
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 2.0e-07 58.2 46 63.0
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 2.0e-07 58.2 46 58.7
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 2.0e-07 58.2 31 87.1
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 2.0e-07 58.2 46 63.0
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 2.0e-07 58.2 46 63.0
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.0e-07 58.2 46 63.0
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 2.0e-07 58.2 32 78.1
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.7e-07 57.8 34 76.5
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 2.7e-07 57.8 41 68.3
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 2.7e-07 57.8 46 60.9
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 2.7e-07 57.8 46 60.9
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 2.7e-07 57.8 46 60.9
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 3.5e-07 57.4 41 68.3
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 3.5e-07 57.4 41 68.3
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 3.5e-07 57.4 41 65.9
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 3.5e-07 57.4 46 60.9
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 3.5e-07 57.4 46 60.9
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.5e-07 57.4 46 60.9
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 4.5e-07 57.0 46 58.7
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 4.5e-07 57.0 32 78.1
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 4.5e-07 57.0 32 78.1
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 4.5e-07 57.0 31 83.9
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 4.5e-07 57.0 41 65.9
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 5.9e-07 56.6 41 63.4
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 5.9e-07 56.6 41 63.4
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 5.9e-07 56.6 32 78.1
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 5.9e-07 56.6 46 60.9
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 7.7e-07 56.2 32 75.0
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 7.7e-07 56.2 32 75.0
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 7.7e-07 56.2 32 75.0
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 7.7e-07 56.2 31 80.6
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 7.7e-07 56.2 41 63.4
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 7.7e-07 56.2 41 61.0
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 7.7e-07 56.2 46 58.7
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 7.7e-07 56.2 46 58.7
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.0e-06 55.8 46 60.9
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 1.3e-06 55.5 32 75.0
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 1.3e-06 55.5 46 58.7
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.7e-06 55.1 41 65.9
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 1.7e-06 55.1 31 77.4
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 2.2e-06 54.7 41 61.0
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 2.2e-06 54.7 41 63.4
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 2.9e-06 54.3 41 61.0
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 2.9e-06 54.3 56 53.6
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 2.9e-06 54.3 32 75.0
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 2.9e-06 54.3 41 61.0
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 3.8e-06 53.9 46 56.5
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 5.0e-06 53.5 46 56.5
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 5.0e-06 53.5 46 56.5
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 6.5e-06 53.1 29 82.8
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 8.5e-06 52.8 41 63.4
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 8.5e-06 52.8 41 58.5


User provided reference genes

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