Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249251 Rosa chinensis HOM05D005117 ORTHO05D005956 4.5e-92 341.3 177 100.0
RcHm_v2.0_Chr6g0249991 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-76 289.7 175 88.6
RcHm_v2.0_Chr6g0250191 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-60 236.5 130 93.1
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 2.7e-60 235.7 130 93.1
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 5.1e-59 231.5 130 90.8
RcHm_v2.0_Chr6g0249901 Rosa chinensis HOM05D005117 ORTHO05D005956 6.6e-59 231.1 130 91.5
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 7.6e-55 217.6 133 85.7
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 2.2e-54 216.1 133 85.0
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 1.5e-50 203.4 128 82.8
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 2.8e-49 199.1 129 80.6
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 4.9e-38 161.8 129 63.6
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 6.4e-38 161.4 129 62.8
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 6.4e-38 161.4 128 66.4
Haze_13981 Corylus avellana HOM05D005117 ORTHO05D005956 8.4e-38 161.0 131 67.2
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 7.1e-37 157.9 119 66.4
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 2.7e-36 156.0 129 59.7
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 4.6e-36 155.2 127 63.8
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 4.6e-36 155.2 125 64.0
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 6.0e-36 154.8 128 66.4
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 6.0e-36 154.8 129 65.9
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 1.0e-35 154.1 127 63.0
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 1.3e-35 153.7 129 61.2
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 1.3e-35 153.7 129 58.9
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 1.7e-35 153.3 121 63.6
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 2.3e-35 152.9 129 62.0
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 3.0e-35 152.5 130 60.8
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 5.1e-35 151.8 128 57.8
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 5.1e-35 151.8 127 61.4
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 5.1e-35 151.8 130 60.8
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 6.6e-35 151.4 131 61.8
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 1.1e-34 150.6 131 62.6
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 2.5e-34 149.4 125 64.0
RcHm_v2.0_Chr6g0249851 Rosa chinensis HOM05D005117 ORTHO05D005956 3.3e-34 149.1 88 85.2
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 4.3e-34 148.7 127 63.0
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 5.6e-34 148.3 106 70.8
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 5.6e-34 148.3 127 62.2
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 9.6e-34 147.5 128 57.0
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 1.3e-33 147.1 125 62.4
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 1.6e-33 146.7 131 61.1
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.6e-33 146.7 127 61.4
TAR381G0825 Trochodendron aralioides HOM05D005117 ORTHO05D005956 1.6e-33 146.7 127 60.6
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 2.1e-33 146.4 125 58.4
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 2.8e-33 146.0 125 61.6
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 4.8e-33 145.2 125 63.2
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 6.2e-33 144.8 120 62.5
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 6.2e-33 144.8 123 61.8
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 1.1e-32 144.1 101 73.3
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 1.4e-32 143.7 127 61.4
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.4e-32 143.7 121 63.6
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 1.4e-32 143.7 129 62.8
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.4e-32 143.7 125 64.0
SalBow7G0613 Salvia bowleyana HOM05D005117 ORTHO05D005956 1.8e-32 143.3 114 63.2
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 4.0e-32 142.1 120 60.8
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 6.9e-32 141.4 124 59.7
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 6.9e-32 141.4 114 63.2
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 6.9e-32 141.4 105 66.7
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 9.0e-32 141.0 127 57.5
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 1.2e-31 140.6 118 61.0
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 1.5e-31 140.2 130 53.1
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 2.0e-31 139.8 129 56.6
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 2.6e-31 139.4 128 61.7
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 3.4e-31 139.0 119 57.1
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 3.4e-31 139.0 100 67.0
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 4.5e-31 138.7 129 55.8
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 4.5e-31 138.7 112 62.5
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 9.9e-31 137.5 108 61.1
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 1.3e-30 137.1 128 53.1
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 1.3e-30 137.1 128 53.1
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 1.3e-30 137.1 128 53.1
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 1.3e-30 137.1 105 61.9
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 1.3e-30 137.1 115 63.5
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.9e-30 136.0 129 52.7
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 4.9e-30 135.2 131 58.0
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 6.4e-30 134.8 131 52.7
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 6.4e-30 134.8 104 63.5
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 1.1e-29 134.0 120 57.5
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.4e-29 133.7 131 58.0
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 3.2e-29 132.5 107 57.9
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 3.2e-29 132.5 107 59.8
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 4.2e-29 132.1 122 63.1
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 4.2e-29 132.1 122 63.1
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 5.4e-29 131.7 131 56.5
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 7.1e-29 131.3 122 63.1
ATR1089G036 Amborella trichopoda HOM05D005117 ORTHO05D005956 1.2e-28 130.6 131 51.9
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 2.7e-28 129.4 122 57.4
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 3.5e-28 129.0 129 52.7
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 4.6e-28 128.6 119 53.8
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 6.0e-28 128.3 103 62.1
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 1.0e-27 127.5 128 54.7
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 1.0e-27 127.5 129 51.9
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.3e-27 127.1 128 51.6
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.3e-27 127.1 128 51.6
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 2.3e-27 126.3 119 57.1
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 3.0e-27 125.9 129 52.7
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 1.1e-26 124.0 131 50.4
Peaxi162Scf00078g01021 Petunia axillaris HOM05D005117 ORTHO05D005956 1.5e-26 123.6 129 53.5
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 3.3e-26 122.5 132 56.1
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 3.3e-26 122.5 107 56.1
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 4.8e-25 118.6 100 61.0
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 1.4e-24 117.1 137 57.7
SHI04053 Sapria himalayana HOM05D005117 ORTHO05D005956 4.0e-24 115.5 101 60.4
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 3.4e-23 112.5 108 53.7
vmacro00947 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 4.9e-22 108.6 129 47.3
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 1.4e-21 107.1 92 59.8
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 6.0e-20 101.7 212 36.3
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 1.5e-15 87.0 106 46.2
SGA_v2.0_scaffold443G51687 Striga asiatica HOM05D005117 ORTHO05D005956 6.5e-14 81.6 92 51.1
Cre06.g303650 Chlamydomonas reinhardtii HOM05D005117 ORTHO05D005956 1.8e-11 73.6 68 52.9
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 3.0e-11 72.8 130 38.5
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 2.8e-09 66.2 130 37.7
MCO13G430 Micromonas commoda HOM05D005117 ORTHO05D005956 4.5e-07 58.9 73 47.9


User provided reference genes

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