Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0249241 Rosa chinensis HOM05D005117 ORTHO05D005956 5.6e-18 93.2 46 100.0
RcHm_v2.0_Chr6g0250211 Rosa chinensis HOM05D005117 ORTHO05D005956 1.7e-14 81.6 40 100.0
FvH4_2g00430 Fragaria vesca HOM05D005117 ORTHO05D005956 1.1e-13 79.0 40 97.5
FAN20G0498 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.1e-13 79.0 40 97.5
FAN24G1044 Fragaria x ananassa HOM05D005117 ORTHO05D005956 1.1e-13 79.0 40 97.5
RcHm_v2.0_Chr6g0250391 Rosa chinensis HOM05D005117 ORTHO05D005956 1.1e-13 79.0 40 97.5
RcHm_v2.0_Chr6g0249701 Rosa chinensis HOM05D005117 ORTHO05D005956 2.4e-13 77.8 46 84.8
QL09p001419 Quercus lobata HOM05D005117 ORTHO05D005956 7.1e-13 76.3 39 92.3
arahy.Tifrunner.gnm1.ann1.H62643 Arachis hypogaea HOM05D005117 ORTHO05D005956 9.2e-13 75.9 40 87.5
arahy.Tifrunner.gnm1.ann1.T5KNPK Arachis hypogaea HOM05D005117 ORTHO05D005956 9.2e-13 75.9 40 87.5
MD10G1002600 Malus domestica HOM05D005117 ORTHO05D005956 9.2e-13 75.9 40 90.0
CANSAT21G1171 Cannabis sativa HOM05D005117 ORTHO05D005956 1.2e-12 75.5 40 90.0
Haze_13982 Corylus avellana HOM05D005117 ORTHO05D005956 1.2e-12 75.5 40 90.0
RcHm_v2.0_Chr6g0249891 Rosa chinensis HOM05D005117 ORTHO05D005956 1.2e-12 75.5 40 95.0
RcHm_v2.0_Chr6g0250171 Rosa chinensis HOM05D005117 ORTHO05D005956 1.6e-12 75.1 40 92.5
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.1e-12 74.7 40 85.0
Sc06g0000080 Simmondsia chinensis HOM05D005117 ORTHO05D005956 2.7e-12 74.3 40 87.5
CiPaw.03G013100 Carya illinoinensis HOM05D005117 ORTHO05D005956 3.5e-12 73.9 40 85.0
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 3.5e-12 73.9 40 80.0
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 3.5e-12 73.9 40 85.0
EL10Ac1g01281 Beta vulgaris HOM05D005117 ORTHO05D005956 4.6e-12 73.6 40 82.5
AUR62038541 Chenopodium quinoa HOM05D005117 ORTHO05D005956 4.6e-12 73.6 39 84.6
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 4.6e-12 73.6 40 85.0
Nitab4.5_0001489g0010 Nicotiana tabacum HOM05D005117 ORTHO05D005956 6.0e-12 73.2 40 82.5
Prupe.8G004200 Prunus persica HOM05D005117 ORTHO05D005956 6.0e-12 73.2 40 85.0
Cpa.g.sc142.12 Carica papaya HOM05D005117 ORTHO05D005956 7.8e-12 72.8 40 82.5
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 7.8e-12 72.8 40 82.5
Eucgr.A01322 Eucalyptus grandis HOM05D005117 ORTHO05D005956 7.8e-12 72.8 40 85.0
Glyma.12G241600 Glycine max HOM05D005117 ORTHO05D005956 7.8e-12 72.8 40 82.5
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 7.8e-12 72.8 40 82.5
CAN.G75.10 Capsicum annuum HOM05D005117 ORTHO05D005956 1.0e-11 72.4 40 82.5
TPR.G34118 Trifolium pratense HOM05D005117 ORTHO05D005956 1.0e-11 72.4 40 80.0
HPP92_019134 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.0e-11 72.4 41 87.8
HPP92_019136 Vanilla planifolia HOM05D005117 ORTHO05D005956 1.0e-11 72.4 41 87.8
Ah.05g170440 Amaranthus hybridus HOM05D005117 ORTHO05D005956 1.3e-11 72.0 40 85.0
Sed0010084 Sechium edule HOM05D005117 ORTHO05D005956 1.3e-11 72.0 40 85.0
PGSC0003DMG401019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.3e-11 72.0 40 80.0
PGSC0003DMG402019061 Solanum tuberosum HOM05D005117 ORTHO05D005956 1.3e-11 72.0 40 80.0
CSS0010464 Camellia sinensis var. sinensis HOM05D005117 ORTHO05D005956 1.7e-11 71.6 40 77.5
ClCG11G008340 Citrullus lanatus HOM05D005117 ORTHO05D005956 1.7e-11 71.6 40 82.5
MELO3C008099.2 Cucumis melo HOM05D005117 ORTHO05D005956 1.7e-11 71.6 40 82.5
CsaV3_2G033280 Cucumis sativus L. HOM05D005117 ORTHO05D005956 1.7e-11 71.6 40 82.5
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.7e-11 71.6 40 80.0
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.7e-11 71.6 40 82.5
GSVIVG01037192001 Vitis vinifera HOM05D005117 ORTHO05D005956 1.7e-11 71.6 40 85.0
Carub.0002s1821 Capsella rubella HOM05D005117 ORTHO05D005956 2.3e-11 71.2 40 77.5
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 2.3e-11 71.2 39 82.1
Dinv22143 Davidia involucrata HOM05D005117 ORTHO05D005956 2.3e-11 71.2 40 80.0
Gohir.A08G230500 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.3e-11 71.2 40 80.0
Gohir.D08G250900 Gossypium hirsutum HOM05D005117 ORTHO05D005956 2.3e-11 71.2 40 80.0
Gorai.004G267600 Gossypium raimondii HOM05D005117 ORTHO05D005956 2.3e-11 71.2 40 80.0
MBI06_g32153_MAGBIO Magnolia biondii HOM05D005117 ORTHO05D005956 2.3e-11 71.2 41 85.4
Nitab4.5_0000009g0430 Nicotiana tabacum HOM05D005117 ORTHO05D005956 2.3e-11 71.2 40 80.0
Solyc11g045120.3 Solanum lycopersicum HOM05D005117 ORTHO05D005956 3.0e-11 70.9 40 77.5
Sopen11g020570 Solanum pennellii HOM05D005117 ORTHO05D005956 3.0e-11 70.9 40 77.5
Cc10_g16050 Coffea canephora HOM05D005117 ORTHO05D005956 3.9e-11 70.5 40 85.0
Hma1.2p1_0016F.1_g010920 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 3.9e-11 70.5 38 81.6
Hma1.2p1_0016F.1_g010930 Hydrangea macrophylla HOM05D005117 ORTHO05D005956 3.9e-11 70.5 38 81.6
Thecc.08G180900 Theobroma cacao HOM05D005117 ORTHO05D005956 3.9e-11 70.5 40 77.5
Psat7g227480 Pisum sativum HOM05D005117 ORTHO05D005956 5.1e-11 70.1 40 80.0
Sabra13G0082800 Salix brachista HOM05D005117 ORTHO05D005956 5.1e-11 70.1 40 72.5
AL2G31010 Arabidopsis lyrata HOM05D005117 ORTHO05D005956 6.6e-11 69.7 40 75.0
AT1G71350 Arabidopsis thaliana HOM05D005117 ORTHO05D005956 6.6e-11 69.7 40 75.0
Ca_13614_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 6.6e-11 69.7 40 77.5
Ca_30189_v3 Cicer arietinum L. HOM05D005117 ORTHO05D005956 6.6e-11 69.7 40 77.5
COL.COLO4_25130 Corchorus olitorius HOM05D005117 ORTHO05D005956 6.6e-11 69.7 40 80.0
ECA247G0677 Erigeron canadensis HOM05D005117 ORTHO05D005956 6.6e-11 69.7 39 84.6
Migut.C01395 Erythranthe guttata HOM05D005117 ORTHO05D005956 6.6e-11 69.7 40 80.0
THA.LOC104810302 Tarenaya hassleriana HOM05D005117 ORTHO05D005956 1.1e-10 68.9 40 72.5
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 1.1e-10 68.9 40 80.0
Lj3g0005068 Lotus japonicus HOM05D005117 ORTHO05D005956 1.5e-10 68.6 40 77.5
Aqoxy5G01861 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 1.9e-10 68.2 40 77.5
CARHR064630 Cardamine hirsuta HOM05D005117 ORTHO05D005956 1.9e-10 68.2 40 72.5
Potri.013G096600 Populus trichocarpa HOM05D005117 ORTHO05D005956 1.9e-10 68.2 40 70.0
BcaB03g14892 Brassica carinata HOM05D005117 ORTHO05D005956 2.5e-10 67.8 40 72.5
BcaC08g46567 Brassica carinata HOM05D005117 ORTHO05D005956 2.5e-10 67.8 40 72.5
A07p37640 Brassica napus HOM05D005117 ORTHO05D005956 2.5e-10 67.8 40 72.5
C06p45410 Brassica napus HOM05D005117 ORTHO05D005956 2.5e-10 67.8 40 72.5
BraA07t31328Z Brassica rapa HOM05D005117 ORTHO05D005956 2.5e-10 67.8 40 72.5
Rhsim12G0002100 Rhododendron simsii HOM05D005117 ORTHO05D005956 2.5e-10 67.8 40 75.0
Cc10_g13530 Coffea canephora HOM05D005117 ORTHO05D005956 3.3e-10 67.4 40 82.5
Os02g0557600 Oryza sativa ssp. japonica HOM05D005117 ORTHO05D005956 3.3e-10 67.4 41 78.0
Atru.chr13.2543 Acer truncatum HOM05D005117 ORTHO05D005956 4.3e-10 67.0 40 75.0
Atru.chr13.2570 Acer truncatum HOM05D005117 ORTHO05D005956 4.3e-10 67.0 40 75.0
Actinidia23299 Actinidia chinensis HOM05D005117 ORTHO05D005956 4.3e-10 67.0 40 72.5
Aa31LG4G9190 Aethionema arabicum HOM05D005117 ORTHO05D005956 4.3e-10 67.0 40 72.5
HanXRQChr12g0369271 Helianthus annuus HOM05D005117 ORTHO05D005956 4.3e-10 67.0 39 76.9
Medtr4g030200 Medicago truncatula HOM05D005117 ORTHO05D005956 4.3e-10 67.0 40 72.5
Thhalv10018306m.g Eutrema salsugineum HOM05D005117 ORTHO05D005956 5.6e-10 66.6 40 70.0
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 7.3e-10 66.2 40 77.5
BolC6t39599H Brassica oleracea HOM05D005117 ORTHO05D005956 7.3e-10 66.2 40 70.0
PSO017G2614 Papaver somniferum HOM05D005117 ORTHO05D005956 7.3e-10 66.2 40 72.5
PSO170G3068 Papaver somniferum HOM05D005117 ORTHO05D005956 7.3e-10 66.2 40 72.5
vmacro00948 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 7.3e-10 66.2 40 72.5
vmacro00946 Vaccinium macrocarpon HOM05D005117 ORTHO05D005956 9.5e-10 65.9 40 72.5
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 1.2e-09 65.5 40 70.0
Sp5g26520 Schrenkiella parvula HOM05D005117 ORTHO05D005956 2.1e-09 64.7 40 70.0
Zm00001eb243900 Zea mays HOM05D005117 ORTHO05D005956 2.8e-09 64.3 41 75.6
unitig_37.g13073 Utricularia gibba HOM05D005117 ORTHO05D005956 3.6e-09 63.9 40 72.5
AagrBONN_evm.TU.Sc2ySwM_340.48 Anthoceros agrestis HOM05D005117 ORTHO05D005956 8.1e-09 62.8 41 73.2
Hund26940 Selenicereus undatus HOM05D005117 ORTHO05D005956 2.4e-08 61.2 32 84.4
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 8.9e-08 59.3 39 71.8
SHI49642 Sapria himalayana HOM05D005117 ORTHO05D005956 8.9e-08 59.3 40 62.5
CDE05G1166 Ceratophyllum demersum HOM05D005117 ORTHO05D005956 1.2e-07 58.9 40 70.0
Aqoxy5G01859 Aquilegia oxysepala HOM05D005117 ORTHO05D005956 4.4e-07 57.0 41 68.3
SEGI_03298 Sequoiadendron giganteum HOM05D005117 ORTHO05D005956 5.8e-07 56.6 33 78.8


User provided reference genes

Program Settings