Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0247511 Rosa chinensis HOM05D005315 ORTHO05D006589 9.7e-84 313.5 169 100.0
RcHm_v2.0_Chr3g0496291 Rosa chinensis HOM05D005315 ORTHO05D006589 4.7e-62 241.5 167 80.2
RcHm_v2.0_Chr6g0292881 Rosa chinensis HOM05D005315 ORTHO05D006589 2.9e-56 222.2 149 81.2
FAN20G2356 Fragaria x ananassa HOM05D005315 ORTHO05D006589 3.3e-52 208.8 149 75.8
Prupe.2G090200 Prunus persica HOM05D005315 ORTHO05D006589 5.0e-48 194.9 149 73.2
MD03G1278200 Malus domestica HOM05D005315 ORTHO05D006589 1.9e-47 193.0 149 72.5
Prupe.8G254400 Prunus persica HOM05D005315 ORTHO05D006589 5.5e-47 191.4 149 71.8
PSO170G6158 Papaver somniferum HOM05D005315 ORTHO05D006589 3.6e-46 188.7 149 69.1
MD11G1300200 Malus domestica HOM05D005315 ORTHO05D006589 4.7e-46 188.3 168 65.5
Dinv33007 Davidia involucrata HOM05D005315 ORTHO05D006589 6.1e-46 188.0 149 67.8
CSS0021362 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 8.0e-46 187.6 149 66.4
PSO210G5824 Papaver somniferum HOM05D005315 ORTHO05D006589 8.0e-46 187.6 149 68.5
CSS0027333 Camellia sinensis var. sinensis HOM05D005315 ORTHO05D006589 1.0e-45 187.2 149 66.4
Hund18046 Selenicereus undatus HOM05D005315 ORTHO05D006589 1.0e-45 187.2 150 66.7
Manes.01G214900 Manihot esculenta HOM05D005315 ORTHO05D006589 2.3e-45 186.0 149 68.5
Atru.chr4.1184 Acer truncatum HOM05D005315 ORTHO05D006589 1.5e-44 183.3 149 66.4
Ciclev10021031m.g Citrus clementina HOM05D005315 ORTHO05D006589 2.0e-44 183.0 149 67.1
Eucgr.K03447 Eucalyptus grandis HOM05D005315 ORTHO05D006589 4.4e-44 181.8 149 67.1
Hma1.2p1_0399F.1_g144060 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 4.4e-44 181.8 149 67.1
Gohir.D08G137700 Gossypium hirsutum HOM05D005315 ORTHO05D006589 9.8e-44 180.6 149 67.1
Gorai.004G141000 Gossypium raimondii HOM05D005315 ORTHO05D006589 9.8e-44 180.6 149 67.1
VMungo1383G1398 Vigna mungo HOM05D005315 ORTHO05D006589 1.3e-43 180.3 149 67.8
CAN.G276.6 Capsicum annuum HOM05D005315 ORTHO05D006589 1.7e-43 179.9 170 60.6
Haze_04835 Corylus avellana HOM05D005315 ORTHO05D006589 1.7e-43 179.9 149 67.1
Cfa006013 Carpinus fangiana HOM05D005315 ORTHO05D006589 2.2e-43 179.5 149 67.1
Sc24g0001270 Simmondsia chinensis HOM05D005315 ORTHO05D006589 2.2e-43 179.5 149 65.1
Gohir.A08G116900 Gossypium hirsutum HOM05D005315 ORTHO05D006589 2.8e-43 179.1 149 66.4
Phvul.001G203400 Phaseolus vulgaris HOM05D005315 ORTHO05D006589 3.7e-43 178.7 149 67.1
Sed0018657 Sechium edule HOM05D005315 ORTHO05D006589 6.3e-43 177.9 149 64.4
Manes.05G066800 Manihot esculenta HOM05D005315 ORTHO05D006589 8.3e-43 177.6 150 66.0
Solyc04g053080.4 Solanum lycopersicum HOM05D005315 ORTHO05D006589 1.4e-42 176.8 151 64.9
PGSC0003DMG400016587 Solanum tuberosum HOM05D005315 ORTHO05D006589 1.4e-42 176.8 151 64.9
TPR.G32271 Trifolium pratense HOM05D005315 ORTHO05D006589 1.4e-42 176.8 149 66.4
Ca_09122_v3 Cicer arietinum L. HOM05D005315 ORTHO05D006589 1.8e-42 176.4 149 65.8
Duzib138G1810 Durio zibethinus HOM05D005315 ORTHO05D006589 1.8e-42 176.4 149 65.1
Sopen04g023370 Solanum pennellii HOM05D005315 ORTHO05D006589 1.8e-42 176.4 151 64.2
DCAR_003965 Daucus carota HOM05D005315 ORTHO05D006589 3.1e-42 175.6 149 65.8
Nn1g09466 Nelumbo nucifera HOM05D005315 ORTHO05D006589 3.1e-42 175.6 149 63.1
EL10Ac1g00719 Beta vulgaris HOM05D005315 ORTHO05D006589 5.4e-42 174.9 151 64.2
Sabra14G0100000 Salix brachista HOM05D005315 ORTHO05D006589 5.4e-42 174.9 149 65.1
Lj6A760G44 Lonicera japonica HOM05D005315 ORTHO05D006589 7.0e-42 174.5 148 65.5
Potri.014G134100 Populus trichocarpa HOM05D005315 ORTHO05D006589 9.1e-42 174.1 149 65.8
AUR62029964 Chenopodium quinoa HOM05D005315 ORTHO05D006589 1.2e-41 173.7 151 62.3
Nitab4.5_0000431g0150 Nicotiana tabacum HOM05D005315 ORTHO05D006589 1.6e-41 173.3 149 65.1
Psat3g025640 Pisum sativum HOM05D005315 ORTHO05D006589 1.6e-41 173.3 149 64.4
AUR62002550 Chenopodium quinoa HOM05D005315 ORTHO05D006589 2.0e-41 172.9 151 62.3
Medtr7g108240 Medicago truncatula HOM05D005315 ORTHO05D006589 2.7e-41 172.6 149 64.4
QL10p015953 Quercus lobata HOM05D005315 ORTHO05D006589 3.5e-41 172.2 152 64.5
Nitab4.5_0013619g0010 Nicotiana tabacum HOM05D005315 ORTHO05D008125 4.5e-41 171.8 149 63.8
Thecc.01G292600 Theobroma cacao HOM05D005315 ORTHO05D006589 5.9e-41 171.4 149 64.4
Thhalv10006094m.g Eutrema salsugineum HOM05D005315 ORTHO05D006589 7.7e-41 171.0 156 61.5
Glyma.19G207500 Glycine max HOM05D005315 ORTHO05D006589 7.7e-41 171.0 149 65.8
Aqoxy2G03077 Aquilegia oxysepala HOM05D005315 ORTHO05D006589 1.0e-40 170.6 148 64.2
Nitab4.5_0008505g0010 Nicotiana tabacum HOM05D005315 ORTHO05D006589 1.0e-40 170.6 149 62.4
MSTRG.16494 Avicennia marina HOM05D005315 ORTHO05D006589 1.3e-40 170.2 149 64.4
Aa31LG10G16750 Aethionema arabicum HOM05D005315 ORTHO05D006589 1.7e-40 169.9 151 62.3
MELO3C016054.2 Cucumis melo HOM05D005315 ORTHO05D006589 1.7e-40 169.9 149 63.1
COL.COLO4_08010 Corchorus olitorius HOM05D005315 ORTHO05D006589 2.3e-40 169.5 149 61.7
Medtr4g104580 Medicago truncatula HOM05D005315 ORTHO05D006589 2.3e-40 169.5 149 63.8
Sp5g00580 Schrenkiella parvula HOM05D005315 ORTHO05D006589 2.3e-40 169.5 156 59.6
Glyma.03G210300 Glycine max HOM05D005315 ORTHO05D006589 2.9e-40 169.1 149 65.1
ClCG09G006320 Citrullus lanatus HOM05D005315 ORTHO05D006589 3.8e-40 168.7 149 61.1
PGR044G2036 Punica granatum HOM05D005315 ORTHO05D006589 8.6e-40 167.5 148 62.8
THA.LOC104802209 Tarenaya hassleriana HOM05D005315 ORTHO05D006589 1.1e-39 167.2 150 60.0
TWI59G0122 Tripterygium wilfordii HOM05D005315 ORTHO05D006589 1.9e-39 166.4 149 60.4
Nitab4.5_0000492g0210 Nicotiana tabacum HOM05D005315 ORTHO05D006589 2.5e-39 166.0 149 62.4
EL10Ac3g06247 Beta vulgaris HOM05D005315 ORTHO05D006589 3.3e-39 165.6 152 62.5
CANSAT25G3366 Cannabis sativa HOM05D005315 ORTHO05D006589 3.3e-39 165.6 149 62.4
Duzib133G0389 Durio zibethinus HOM05D005315 ORTHO05D006589 5.5e-39 164.9 141 66.0
BcaC02g10325 Brassica carinata HOM05D005315 ORTHO05D006589 2.1e-38 162.9 155 58.7
C04p30300 Brassica napus HOM05D005315 ORTHO05D006589 2.1e-38 162.9 155 58.7
BolC4t24563H Brassica oleracea HOM05D005315 ORTHO05D006589 2.1e-38 162.9 155 58.7
CsaV3_7G028820 Cucumis sativus L. HOM05D005315 ORTHO05D006589 2.8e-38 162.5 149 61.1
SGA_v2.0_scaffold304G47908 Striga asiatica HOM05D005315 ORTHO05D006589 3.6e-38 162.2 149 61.1
Lalb_Chr04g0259741 Lupinus albus HOM05D005315 ORTHO05D006589 1.0e-37 160.6 149 62.4
Sed0022397 Sechium edule HOM05D005315 ORTHO05D006589 1.4e-37 160.2 149 59.7
QL12p024404 Quercus lobata HOM05D005315 ORTHO05D006589 1.8e-37 159.8 152 61.8
Lj1g0005840 Lotus japonicus HOM05D005315 ORTHO05D006589 3.0e-37 159.1 149 61.7
Peaxi162Scf01132g00228 Petunia axillaris HOM05D005315 ORTHO05D006589 3.0e-37 159.1 149 60.4
FvH4_2g14201 Fragaria vesca HOM05D005315 ORTHO05D006589 4.0e-37 158.7 149 63.8
FAN24G2129 Fragaria x ananassa HOM05D005315 ORTHO05D006589 4.0e-37 158.7 149 63.8
A04p00430 Brassica napus HOM05D005315 ORTHO05D006589 5.2e-37 158.3 159 57.9
BraA04t15762Z Brassica rapa HOM05D005315 ORTHO05D006589 5.2e-37 158.3 159 57.9
BcaB02g08087 Brassica carinata HOM05D005315 ORTHO05D006589 8.9e-37 157.5 159 56.6
A09p54790 Brassica napus HOM05D005315 ORTHO05D006589 2.0e-36 156.4 157 56.1
BraA09t40888Z Brassica rapa HOM05D005315 ORTHO05D006589 2.0e-36 156.4 157 56.1
Cpa.g.sc9.185 Carica papaya HOM05D005315 ORTHO05D006589 2.0e-36 156.4 149 59.7
C08p37650 Brassica napus HOM05D005315 ORTHO05D006589 7.5e-36 154.5 156 56.4
BolC8t51348H Brassica oleracea HOM05D005315 ORTHO05D006589 7.5e-36 154.5 156 56.4
Carub.0005s2959 Capsella rubella HOM05D005315 ORTHO05D006589 7.5e-36 154.5 154 57.1
AT3G62940 Arabidopsis thaliana HOM05D005315 ORTHO05D006589 9.8e-36 154.1 157 55.4
ATR0665G323 Amborella trichopoda HOM05D005315 ORTHO05D006589 8.3e-35 151.0 150 62.0
CARHR173230 Cardamine hirsuta HOM05D005315 ORTHO05D006589 1.8e-34 149.8 156 55.8
HPP92_002250 Vanilla planifolia HOM05D005315 ORTHO05D006589 4.1e-34 148.7 148 56.1
Oeu028371.1 Olea europaea HOM05D005315 ORTHO05D006589 5.4e-34 148.3 149 57.0
Zm00001eb212540 Zea mays HOM05D005315 ORTHO05D006589 7.0e-34 147.9 149 55.7
Cc07_g16220 Coffea canephora HOM05D005315 ORTHO05D006589 2.7e-33 146.0 141 58.9
arahy.Tifrunner.gnm1.ann1.EUG2WG Arachis hypogaea HOM05D005315 ORTHO05D006589 3.5e-33 145.6 149 55.0
arahy.Tifrunner.gnm1.ann1.NZ3ZKL Arachis hypogaea HOM05D005315 ORTHO05D006589 3.5e-33 145.6 149 55.0
HanXRQChr12g0357681 Helianthus annuus HOM05D005315 ORTHO05D006589 4.5e-33 145.2 138 59.4
Migut.B00780 Erythranthe guttata HOM05D005315 ORTHO05D006589 5.9e-33 144.8 150 57.3
Actinidia32232 Actinidia chinensis HOM05D005315 ORTHO05D006589 7.8e-33 144.4 161 53.4
Gorai.008G008700 Gossypium raimondii HOM05D005315 ORTHO05D006589 1.0e-32 144.1 142 57.7
Nn1g09463 Nelumbo nucifera HOM05D005315 ORTHO05D006589 5.0e-32 141.7 107 64.5
AL5G45720 Arabidopsis lyrata HOM05D005315 ORTHO05D006589 1.5e-31 140.2 162 51.2
CDE04G3078 Ceratophyllum demersum HOM05D005315 ORTHO05D006589 1.9e-31 139.8 149 53.0
Gohir.D12G008800 Gossypium hirsutum HOM05D005315 ORTHO05D006589 1.0e-29 134.0 136 55.1
Os04g0619500 Oryza sativa ssp. japonica HOM05D005315 ORTHO05D006589 2.3e-29 132.9 139 53.2
BcaB02g07311 Brassica carinata HOM05D005315 ORTHO05D006589 3.1e-29 132.5 160 52.5
RcHm_v2.0_Chr5g0001231 Rosa chinensis HOM05D005315 ORTHO05D006589 3.1e-29 132.5 169 51.5
Hma1.2p1_0209F.1_g088950 Hydrangea macrophylla HOM05D005315 ORTHO05D006589 4.0e-29 132.1 150 51.3
CiPaw.07G101900 Carya illinoinensis HOM05D005315 ORTHO05D006589 6.8e-29 131.3 149 53.7
vmacro02497 Vaccinium macrocarpon HOM05D005315 ORTHO05D006589 4.4e-28 128.6 151 53.6
Rhsim13G0016000 Rhododendron simsii HOM05D005315 ORTHO05D006589 1.3e-27 127.1 151 53.6
unitig_26.g9038 Utricularia gibba HOM05D005315 ORTHO05D006589 2.9e-27 125.9 149 51.7
SEGI_33648 Sequoiadendron giganteum HOM05D005315 ORTHO05D006589 1.4e-26 123.6 137 51.1
MBI02_g41662_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 1.9e-26 123.2 142 49.3
ATR0564G214 Amborella trichopoda HOM05D005315 ORTHO05D006589 7.0e-26 121.3 151 55.0
Lsat_1_v5_gn_5_90141 Lactuca sativa HOM05D005315 ORTHO05D006589 1.0e-24 117.5 149 50.3
ECA234G3298 Erigeron canadensis HOM05D005315 ORTHO05D006589 1.1e-23 114.0 151 49.0
SMO196G0226 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 1.1e-23 114.0 152 47.4
ECA247G4081 Erigeron canadensis HOM05D005315 ORTHO05D006589 1.5e-23 113.6 138 51.4
HanXRQChr16g0511311 Helianthus annuus HOM05D005315 ORTHO05D006589 1.9e-23 113.2 87 67.8
Mapoly0036s0154 Marchantia polymorpha HOM05D005315 ORTHO05D006589 2.5e-23 112.8 149 46.3
AagrBONN_evm.TU.Sc2ySwM_228.5144 Anthoceros agrestis HOM05D005315 ORTHO05D006589 8.0e-22 107.8 139 47.5
Ah.12g052040 Amaranthus hybridus HOM05D005315 ORTHO05D006589 2.0e-20 103.2 81 65.4
GSVIVG01010986001 Vitis vinifera HOM05D005315 ORTHO05D006589 2.0e-20 103.2 112 58.9
CBR_g50012 Chara braunii HOM05D005315 ORTHO05D006589 3.9e-16 89.0 142 37.3
Pp3c15_4060 Physcomitrium patens HOM05D005315 ORTHO05D006589 5.1e-16 88.6 150 39.3
Sc24g0001280 Simmondsia chinensis HOM05D005315 ORTHO05D006589 2.0e-12 76.6 49 69.4
TAR369G0925 Trochodendron aralioides HOM05D005315 ORTHO05D006589 2.9e-11 72.8 49 69.4
Cre01.g028550 Chlamydomonas reinhardtii HOM05D005315 ORTHO05D006589 3.5e-09 65.9 79 45.6
SMO234G0054 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 3.0e-08 62.8 69 49.3
SMO196G0254 Selaginella moellendorffii HOM05D005315 ORTHO05D006589 5.6e-07 58.5 81 43.2
MBI13_g04790_MAGBIO Magnolia biondii HOM05D005315 ORTHO05D006589 7.3e-07 58.2 48 54.2


User provided reference genes

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