Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1401.0 707 100.0
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1351.7 707 96.7
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1335.1 707 95.8
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1334.3 701 96.3
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1209.9 645 94.4
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1198.7 661 91.4
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1197.2 638 94.0
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1178.3 637 92.0
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1176.0 714 84.2
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1175.6 637 91.8
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1175.2 637 92.0
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1175.2 637 92.3
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1174.8 637 91.8
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1173.3 636 91.5
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1171.4 637 91.8
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1171.4 637 92.0
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 637 91.2
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1170.6 637 91.4
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1170.6 633 91.9
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1168.3 637 91.1
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1168.3 633 91.6
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1167.9 634 91.6
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1167.5 637 91.1
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 634 91.0
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1164.8 647 90.3
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1164.1 637 90.7
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 637 90.9
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1163.7 637 90.9
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1162.5 634 91.3
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 630 91.6
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1161.0 637 90.4
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1160.6 637 90.6
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1160.6 637 90.1
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1160.6 637 90.9
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1160.2 633 90.8
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1157.9 631 90.8
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1156.4 633 90.5
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1155.6 636 90.1
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1154.8 637 89.5
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 638 89.3
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1152.5 633 90.0
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1151.3 637 89.5
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1150.2 637 89.2
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 637 90.3
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1148.3 636 89.2
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1148.3 637 89.6
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 637 89.2
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1146.3 636 89.5
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 634 89.7
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1145.2 636 89.3
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1144.8 632 90.3
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 640 88.9
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 637 89.0
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 633 89.1
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 632 89.9
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 637 88.9
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 637 88.7
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 637 88.2
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 637 88.1
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 637 88.4
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1135.9 633 88.8
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 633 88.8
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 632 88.9
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 630 89.7
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1134.8 636 87.6
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1134.0 632 89.2
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 632 88.0
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 633 88.3
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 664 85.5
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 634 87.4
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1131.3 628 89.2
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 632 89.9
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1127.9 634 86.9
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 634 87.1
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1126.3 637 88.4
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 632 87.3
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1125.2 636 87.9
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 632 87.2
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 632 87.7
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 632 87.7
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 632 87.7
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1124.0 632 87.7
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1123.2 632 87.3
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 632 87.5
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1118.2 632 86.9
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1115.1 642 85.7
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1114.0 668 82.5
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1113.2 636 87.4
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1111.3 668 82.6
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1110.5 668 82.2
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1109.4 637 86.0
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1109.4 668 82.8
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1107.8 633 87.0
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1107.4 637 86.2
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1100.9 652 83.3
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1099.0 635 84.7
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1092.0 628 86.0
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1089.7 628 85.7
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1079.7 668 81.0
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 0.0e+00 1077.8 569 95.8
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1075.1 628 84.1
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 9.7e-312 1072.8 647 84.1
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 5.5e-306 1053.9 582 89.2
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 5.5e-298 1027.3 630 80.3
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 4.4e-287 991.1 632 77.4
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 1.4e-285 986.1 541 90.6
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 3.4e-284 981.5 534 90.8
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.1e-281 972.2 534 89.7
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 2.7e-268 928.7 634 75.4
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 1.3e-267 926.4 648 72.4
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 2.6e-263 912.1 629 73.3
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 7.2e-258 894.0 648 70.8
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 2.6e-247 859.0 503 86.1
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 9.8e-247 857.1 503 86.1
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.1e-245 853.6 634 72.2
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 3.7e-238 828.6 634 70.3
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 2.9e-230 802.4 638 65.2
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 4.9e-230 801.6 497 80.3
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 8.9e-224 780.8 652 61.0
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 6.0e-204 714.9 444 81.3
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 8.2e-193 677.9 533 68.3
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 1.6e-180 637.1 643 52.7
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 9.7e-178 627.9 446 73.8
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.9e-175 618.6 354 87.0
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 9.1e-168 594.7 411 74.9
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.1e-160 571.2 315 89.8
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.9e-149 533.9 297 89.2
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 7.5e-138 495.4 273 89.4
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.7e-113 414.5 527 43.1
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 3.8e-97 360.1 201 87.1
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 9.9e-90 335.5 240 70.8
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 2.1e-84 317.8 184 86.4
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 8.4e-81 305.8 231 68.4
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 4.3e-77 293.5 162 87.0
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 1.5e-74 285.0 163 86.5
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 8.4e-73 279.3 637 34.1
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 3.1e-59 234.2 273 51.3
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 7.4e-53 213.0 230 54.8
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 3.9e-46 190.7 104 90.4
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 1.1e-40 172.6 99 87.9
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 2.5e-40 171.4 104 81.7
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 3.2e-40 171.0 104 77.9
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 5.5e-40 170.2 162 61.1
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 2.2e-36 158.3 90 86.7
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 5.3e-35 153.7 86 83.7
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 2.2e-33 148.3 125 62.4
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 6.5e-33 146.7 91 81.3
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 1.9e-32 145.2 91 80.2
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 2.0e-29 135.2 74 83.8
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 1.7e-20 105.5 116 52.6
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 6.3e-20 103.6 53 92.5
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 3.5e-18 97.8 70 67.1
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 2.9e-17 94.7 58 81.0
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.5e-16 92.4 51 84.3
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 2.5e-16 91.7 49 85.7
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.0e-14 86.3 63 65.1
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 6.4e-12 77.0 56 64.3
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 3.0e-09 68.2 43 74.4


User provided reference genes

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