Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 3.9e-99 364.8 179 100.0
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 2.8e-97 358.6 179 98.3
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.7e-97 357.8 179 97.2
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.7e-97 357.8 179 97.2
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 1.4e-96 356.3 179 96.6
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 2.0e-95 352.4 179 95.0
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 1.2e-92 343.2 179 92.2
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 7.8e-92 340.5 170 97.1
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.7e-91 339.3 170 96.5
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 5.2e-88 327.8 179 88.3
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 5.2e-88 327.8 179 88.3
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 5.2e-88 327.8 178 87.6
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 6.8e-88 327.4 179 88.3
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 6.8e-88 327.4 179 87.2
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 1.5e-87 326.2 171 91.2
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 2.0e-87 325.9 179 86.6
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 3.4e-87 325.1 179 86.6
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 3.4e-87 325.1 179 86.6
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 3.4e-87 325.1 179 86.0
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 7.6e-87 323.9 179 87.7
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 9.9e-87 323.6 179 86.0
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 4.9e-86 321.2 179 85.5
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 1.1e-85 320.1 179 86.0
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.1e-85 320.1 179 84.4
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 1.9e-85 319.3 179 84.4
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 1.9e-85 319.3 179 86.0
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 2.4e-85 318.9 179 83.8
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 4.2e-85 318.2 179 84.9
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 7.1e-85 317.4 179 84.9
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.2e-84 316.6 179 83.2
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 2.7e-84 315.5 179 82.7
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.5e-84 315.1 179 86.0
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.5e-84 315.1 179 86.0
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 4.6e-84 314.7 179 85.5
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 6.0e-84 314.3 179 83.2
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 7.8e-84 313.9 179 82.7
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 1.3e-83 313.2 179 84.4
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.3e-83 313.2 179 82.7
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 1.3e-83 313.2 179 84.4
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 1.7e-83 312.8 179 83.8
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 1.7e-83 312.8 179 82.7
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 3.9e-83 311.6 179 82.1
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 5.1e-83 311.2 179 82.7
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 6.6e-83 310.8 179 83.2
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 6.6e-83 310.8 179 83.8
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 6.6e-83 310.8 179 83.2
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 8.7e-83 310.5 179 83.2
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 8.7e-83 310.5 179 82.1
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 1.1e-82 310.1 229 70.3
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 1.5e-82 309.7 179 82.1
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.5e-82 309.7 179 81.6
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.9e-82 309.3 179 81.6
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 1.9e-82 309.3 179 83.2
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.9e-82 309.3 179 82.7
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 2.5e-82 308.9 179 82.7
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 4.3e-82 308.1 179 82.7
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.3e-82 308.1 179 83.2
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 5.6e-82 307.8 179 82.1
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 7.3e-82 307.4 179 82.7
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 7.3e-82 307.4 179 82.1
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 9.6e-82 307.0 178 82.6
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 9.6e-82 307.0 179 80.4
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.1e-81 305.8 179 82.7
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.1e-81 305.8 179 81.6
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 2.1e-81 305.8 179 82.1
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 2.1e-81 305.8 179 82.7
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 2.1e-81 305.8 179 82.1
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 2.8e-81 305.4 179 83.2
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.6e-81 305.1 179 82.1
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 8.1e-81 303.9 179 81.0
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 1.1e-80 303.5 179 79.9
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 1.4e-80 303.1 179 81.0
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 1.4e-80 303.1 179 82.1
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 1.4e-80 303.1 179 79.3
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.4e-80 303.1 179 80.4
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 1.4e-80 303.1 179 81.6
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.8e-80 302.8 179 78.8
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.4e-80 302.4 179 79.3
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 2.4e-80 302.4 179 79.9
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 4.0e-80 301.6 179 80.4
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 6.9e-80 300.8 170 84.1
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 9.0e-80 300.4 179 81.6
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.2e-79 300.1 170 83.5
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 1.2e-79 300.1 179 80.4
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 2.0e-79 299.3 179 78.8
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 2.6e-79 298.9 179 78.8
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 3.4e-79 298.5 179 79.9
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 7.6e-79 297.4 179 79.9
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 9.9e-79 297.0 180 78.9
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 1.3e-78 296.6 179 78.2
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 1.7e-78 296.2 179 77.7
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 2.9e-78 295.4 179 77.7
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 3.8e-78 295.0 179 77.1
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 6.4e-78 294.3 179 78.2
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 1.1e-77 293.5 179 75.4
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 1.1e-77 293.5 179 75.4
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 1.1e-77 293.5 179 76.0
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 1.1e-77 293.5 179 76.0
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 1.4e-77 293.1 179 77.1
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 1.4e-77 293.1 179 76.0
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 1.9e-77 292.7 179 77.1
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 4.2e-77 291.6 179 74.9
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 5.4e-77 291.2 179 74.9
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 5.4e-77 291.2 179 74.3
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 5.4e-77 291.2 179 77.7
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 1.2e-76 290.0 180 77.2
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 1.2e-76 290.0 180 76.7
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 1.2e-76 290.0 180 77.2
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 1.6e-76 289.7 179 76.0
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.6e-76 289.7 175 76.6
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.6e-76 289.7 179 76.5
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 2.1e-76 289.3 179 74.9
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 2.7e-76 288.9 179 74.9
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 7.8e-76 287.3 170 80.6
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.0e-75 287.0 179 75.4
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 3.9e-75 285.0 171 81.3
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 5.1e-75 284.6 179 78.8
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 1.8e-72 276.2 243 60.5
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 4.0e-72 275.0 235 60.0
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 1.7e-70 269.6 172 74.4
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 6.4e-70 267.7 179 71.5
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 3.0e-67 258.8 177 69.5
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 1.8e-64 249.6 155 79.4
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 4.0e-64 248.4 177 62.7
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 6.9e-64 247.7 169 69.8
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 4.2e-61 238.4 177 61.6
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 1.5e-58 229.9 142 76.8
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 9.6e-58 227.3 180 63.9
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.4e-56 223.4 169 66.3
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 7.6e-55 217.6 137 75.2
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 3.2e-53 212.2 127 78.0
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 1.4e-45 186.8 119 73.9
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 2.0e-42 176.4 182 49.5
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 7.7e-39 164.5 94 80.9
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 6.5e-38 161.4 98 79.6
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 3.2e-37 159.1 139 60.4
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.5e-29 131.7 75 85.3
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 1.6e-28 130.2 67 88.1
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.1e-26 124.0 184 40.2
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 3.1e-16 89.4 192 33.3
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 1.6e-15 87.0 60 70.0
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 7.2e-13 78.2 46 80.4
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 5.2e-11 72.0 73 46.6
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 8.8e-11 71.2 54 66.7
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 2.2e-09 66.6 95 40.0
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 4.1e-08 62.4 100 34.0
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 9.1e-08 61.2 166 28.9
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 5.0e-06 55.5 162 28.4


User provided reference genes

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