Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 7.1e-90 334.0 173 100.0
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 6.0e-89 330.9 173 99.4
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 6.0e-89 330.9 173 99.4
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 1.7e-88 329.3 173 98.8
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 3.0e-88 328.6 173 98.8
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.3e-83 313.2 173 94.8
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 1.6e-78 296.2 173 89.6
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 1.7e-75 286.2 173 88.4
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 1.4e-74 283.1 174 85.6
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 2.4e-74 282.3 173 85.0
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 3.2e-74 282.0 173 83.8
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 4.6e-73 278.1 173 83.8
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 2.3e-72 275.8 174 85.1
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 2.3e-72 275.8 174 83.9
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 3.9e-72 275.0 173 83.2
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 5.1e-72 274.6 175 83.4
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 5.1e-72 274.6 174 83.9
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 8.7e-72 273.9 173 82.7
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 1.5e-71 273.1 173 81.5
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 2.5e-71 272.3 173 85.0
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 4.3e-71 271.6 174 82.8
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 5.6e-71 271.2 174 81.6
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 7.3e-71 270.8 174 82.8
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 7.3e-71 270.8 174 82.8
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 7.3e-71 270.8 174 82.8
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 9.6e-71 270.4 174 83.3
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 3.6e-70 268.5 174 82.8
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 4.8e-70 268.1 174 81.6
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 4.8e-70 268.1 174 82.2
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 6.2e-70 267.7 174 81.0
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 3.1e-69 265.4 174 81.0
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 5.3e-69 264.6 174 80.5
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 1.2e-68 263.5 183 78.7
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 1.5e-68 263.1 174 81.0
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 3.4e-68 261.9 175 82.9
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 3.4e-68 261.9 174 81.0
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 7.6e-68 260.8 174 81.6
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 9.9e-68 260.4 174 81.0
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 2.2e-67 259.2 165 82.4
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 8.4e-67 257.3 174 78.2
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 1.4e-66 256.5 177 79.7
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 1.9e-66 256.1 174 78.7
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 2.4e-66 255.8 176 79.5
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 4.2e-66 255.0 174 78.2
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 5.4e-66 254.6 175 78.9
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 7.1e-66 254.2 174 77.6
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 7.1e-66 254.2 178 78.7
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 9.3e-66 253.8 166 82.5
VMungo1383G2760 Vigna mungo HOM05D005631 ORTHO05D006765 1.6e-65 253.1 152 86.8
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 2.7e-65 252.3 167 82.0
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 2.7e-65 252.3 174 78.7
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 2.7e-65 252.3 174 78.7
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 4.6e-65 251.5 174 78.7
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 4.6e-65 251.5 174 78.2
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 7.9e-65 250.8 174 77.6
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 7.9e-65 250.8 174 77.6
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 7.9e-65 250.8 174 77.6
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 1.3e-64 250.0 174 77.0
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 1.8e-64 249.6 174 77.6
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 3.0e-64 248.8 174 76.4
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 3.0e-64 248.8 174 76.4
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 3.0e-64 248.8 174 76.4
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 3.0e-64 248.8 174 76.4
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 3.9e-64 248.4 174 76.4
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 3.9e-64 248.4 174 76.4
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 3.9e-64 248.4 174 76.4
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 3.9e-64 248.4 174 76.4
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 6.7e-64 247.7 174 77.0
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 8.7e-64 247.3 174 75.9
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 1.1e-63 246.9 174 74.7
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 1.9e-63 246.1 173 75.7
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 3.3e-63 245.4 175 73.7
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 3.3e-63 245.4 168 77.4
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 9.6e-63 243.8 174 74.7
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 1.6e-62 243.0 175 76.6
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 4.8e-62 241.5 175 76.0
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 6.9e-61 237.7 173 72.3
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 1.2e-60 236.9 174 73.6
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 1.2e-60 236.9 173 72.3
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 5.8e-60 234.6 173 72.8
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 1.7e-59 233.0 152 82.9
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 2.9e-59 232.3 173 71.1
Aqoxy1G01288 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 8.4e-59 230.7 168 75.0
Os03g0367800 Oryza sativa ssp. japonica HOM05D005631 ORTHO05D006765 7.1e-58 227.6 173 68.8
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 1.2e-57 226.9 150 81.3
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 2.1e-57 226.1 168 75.0
Zm00001eb195120 Zea mays HOM05D005631 ORTHO05D006765 3.0e-56 222.2 172 66.3
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 8.7e-56 220.7 176 71.0
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 8.7e-56 220.7 174 70.1
COL.COLO4_11152 Corchorus olitorius HOM05D005631 ORTHO05D006765 1.1e-55 220.3 173 72.3
Mapoly0066s0110 Marchantia polymorpha HOM05D005631 ORTHO05D006765 1.1e-53 213.8 178 63.5
Pp3c4_18980 Physcomitrium patens HOM05D005631 ORTHO05D006765 6.1e-49 198.0 168 64.3
SEGI_31870 Sequoiadendron giganteum HOM05D005631 ORTHO05D006765 1.3e-48 196.8 140 70.7
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 3.0e-48 195.7 173 62.4
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 1.5e-47 193.4 137 77.4
VMungo0540G1856 Vigna mungo HOM05D005631 ORTHO05D006765 1.3e-46 190.3 116 86.2
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 2.2e-46 189.5 137 77.4
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 4.8e-46 188.3 154 71.4
SMO134G0149 Selaginella moellendorffii HOM05D005631 ORTHO05D006765 6.9e-45 184.5 179 57.5
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 9.0e-45 184.1 137 73.7
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 4.5e-44 181.8 137 72.3
Oeu059678.1 Olea europaea HOM05D005631 ORTHO05D006765 9.4e-42 174.1 152 64.5
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 3.6e-41 172.2 154 65.6
Peaxi162Scf00635g00621 Petunia axillaris HOM05D005631 ORTHO05D006765 7.9e-41 171.0 142 64.1
Atru.chr3.4121 Acer truncatum HOM05D005631 ORTHO05D006765 4.3e-39 165.2 164 62.2
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 6.5e-35 151.4 115 80.0
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 2.1e-33 146.4 106 76.4
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 9.7e-31 137.5 109 73.4
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 1.7e-30 136.7 112 71.4
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 2.2e-30 136.3 97 77.3
AagrBONN_evm.TU.Sc2ySwM_117.69 Anthoceros agrestis HOM05D005631 ORTHO05D006765 1.2e-25 120.6 173 43.4
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 1.5e-23 113.6 106 67.0
MCO05G013 Micromonas commoda HOM05D005631 ORTHO05D006765 3.1e-21 105.9 164 43.3
Sabra19G0122200 Salix brachista HOM05D005631 ORTHO05D006765 6.5e-19 98.2 99 66.7
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 2.5e-18 96.3 79 65.8
Sabra16G0029400 Salix brachista HOM05D005631 ORTHO05D006765 2.1e-17 93.2 99 63.6
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 1.5e-15 87.0 69 69.6
BcaC09g51457 Brassica carinata HOM05D005631 ORTHO05D006765 7.5e-15 84.7 59 79.7
BcaC05g26847 Brassica carinata HOM05D005631 ORTHO05D006765 2.2e-14 83.2 59 78.0
A08p25520 Brassica napus HOM05D005631 ORTHO05D006765 2.2e-14 83.2 59 78.0
Oeu008088.1 Olea europaea HOM05D005631 ORTHO05D006765 8.3e-14 81.3 76 60.5
BcaC08g44597 Brassica carinata HOM05D005631 ORTHO05D006765 1.8e-13 80.1 60 78.3
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 4.1e-13 79.0 98 60.2
BcaC09g51408 Brassica carinata HOM05D005631 ORTHO05D006765 5.4e-13 78.6 59 74.6
BolC1t05347H Brassica oleracea HOM05D005631 ORTHO05D006765 5.4e-13 78.6 59 72.9
A07p13430 Brassica napus HOM05D005631 ORTHO05D006765 1.6e-12 77.0 59 76.3
CDE02G1786 Ceratophyllum demersum HOM05D005631 ORTHO05D006765 1.0e-11 74.3 122 47.5
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 2.2e-11 73.2 67 74.6
Aqoxy1G01289 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 1.0e-08 64.3 47 80.9
Sabra04G0079400 Salix brachista HOM05D005631 ORTHO05D006765 1.0e-08 64.3 79 54.4
C01p12950 Brassica napus HOM05D005631 ORTHO05D006765 1.4e-08 63.9 43 83.7
Sabra08G0141900 Salix brachista HOM05D000225 ORTHO05D002520 1.8e-08 63.5 71 57.7
BcaC02g08205 Brassica carinata HOM05D005631 ORTHO05D006765 3.0e-08 62.8 46 73.9
Cre01.g044000 Chlamydomonas reinhardtii HOM05D005631 ORTHO05D006765 4.0e-08 62.4 140 37.1
C01p13430 Brassica napus HOM05D005631 ORTHO05D006765 5.2e-08 62.0 43 81.4
Cc05_g02510 Coffea canephora HOM05D005631 ORTHO05D006765 6.8e-08 61.6 108 48.1
Sabra19G0131600 Salix brachista HOM05D005631 ORTHO05D006765 8.8e-08 61.2 95 50.5
C04p57300 Brassica napus HOM05D005631 ORTHO05D006765 2.0e-07 60.1 43 79.1
Sabra15G0067400 Salix brachista HOM05D003748 ORTHO05D004108 5.7e-07 58.5 81 49.4
Sabra10G0082900 Salix brachista HOM05D005631 ORTHO05D006765 7.5e-07 58.2 60 56.7
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 1.7e-06 57.0 60 55.0
CBR_g4734 Chara braunii HOM05D005631 ORTHO05D006765 2.2e-06 56.6 100 42.0


User provided reference genes

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