Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 6.2e-89 330.9 180 100.0
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 9.0e-88 327.0 180 98.3
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 5.8e-87 324.3 180 97.8
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 9.9e-87 323.6 180 91.7
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.9e-85 319.3 179 91.1
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 2.7e-84 315.5 180 90.6
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 3.6e-68 261.9 180 81.1
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 4.3e-66 255.0 177 74.6
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 9.7e-66 253.8 178 74.2
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 2.2e-65 252.7 178 72.5
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 3.7e-65 251.9 181 75.1
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 4.8e-65 251.5 179 73.7
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 8.2e-65 250.8 178 73.6
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 8.2e-65 250.8 178 73.6
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 8.2e-65 250.8 178 71.3
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 1.1e-64 250.4 179 79.3
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 1.4e-64 250.0 180 72.2
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 6.9e-64 247.7 178 72.5
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 9.1e-64 247.3 179 71.5
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 1.2e-63 246.9 179 73.2
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 1.2e-63 246.9 179 73.2
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 2.0e-63 246.1 178 68.0
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 2.0e-63 246.1 179 72.6
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 3.4e-63 245.4 179 72.6
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 3.4e-63 245.4 179 72.6
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 5.9e-63 244.6 177 71.8
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 1.0e-62 243.8 177 78.5
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 1.3e-62 243.4 179 70.9
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.7e-62 243.0 179 71.5
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 3.8e-62 241.9 178 71.9
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 5.0e-62 241.5 183 69.9
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 5.0e-62 241.5 167 73.1
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 5.0e-62 241.5 179 71.5
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 6.5e-62 241.1 178 69.7
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 8.5e-62 240.7 178 69.1
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 1.1e-61 240.4 179 70.4
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 1.4e-61 240.0 180 70.6
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 1.9e-61 239.6 178 70.8
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 3.2e-61 238.8 180 68.3
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 4.2e-61 238.4 178 68.5
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 4.2e-61 238.4 174 70.7
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 7.2e-61 237.7 178 70.8
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 1.2e-60 236.9 181 74.0
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 2.1e-60 236.1 180 66.1
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 3.6e-60 235.3 178 68.5
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 6.1e-60 234.6 180 67.2
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 6.1e-60 234.6 176 69.9
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 6.1e-60 234.6 178 68.5
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 7.9e-60 234.2 162 74.1
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 1.0e-59 233.8 179 70.4
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 1.0e-59 233.8 162 72.2
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 1.4e-59 233.4 180 67.2
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 2.3e-59 232.6 143 81.1
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 2.3e-59 232.6 178 66.9
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 3.9e-59 231.9 180 75.0
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 5.1e-59 231.5 178 68.5
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 2.0e-58 229.6 178 68.0
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 7.4e-58 227.6 168 68.5
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 9.7e-58 227.3 166 74.7
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.3e-57 226.9 143 80.4
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 3.7e-57 225.3 180 72.8
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 4.8e-57 224.9 165 68.5
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 6.3e-57 224.6 179 65.4
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 1.1e-56 223.8 182 65.9
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 5.3e-56 221.5 144 77.8
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 5.3e-56 221.5 177 66.7
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 5.3e-56 221.5 162 66.0
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 1.2e-55 220.3 178 66.3
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 1.2e-55 220.3 178 66.9
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 1.2e-55 220.3 178 65.2
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 1.5e-55 219.9 177 65.0
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 2.0e-55 219.5 157 72.6
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 2.0e-55 219.5 207 64.3
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 2.0e-55 219.5 178 69.1
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 3.4e-55 218.8 135 81.5
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 6.5e-54 214.5 182 62.1
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 5.5e-53 211.5 174 61.5
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.7e-52 209.1 143 75.5
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 2.7e-52 209.1 143 75.5
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 4.7e-52 208.4 180 61.7
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 7.9e-52 207.6 134 77.6
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 1.8e-51 206.5 139 74.1
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 5.2e-51 204.9 139 74.1
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 6.7e-51 204.5 174 59.2
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 1.5e-50 203.4 182 59.9
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 3.3e-50 202.2 171 59.6
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 1.7e-49 199.9 138 71.7
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 2.8e-49 199.1 175 58.9
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 8.2e-49 197.6 162 58.6
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 1.1e-48 197.2 180 58.9
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 1.8e-48 196.4 161 60.9
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 1.8e-48 196.4 134 72.4
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 1.2e-47 193.7 178 64.0
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 1.6e-47 193.4 127 75.6
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 2.6e-47 192.6 114 82.5
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 4.5e-47 191.8 140 64.3
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 5.9e-47 191.4 140 64.3
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 5.9e-47 191.4 140 64.3
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 1.0e-46 190.7 138 64.5
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 1.3e-46 190.3 178 60.7
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 1.7e-46 189.9 140 63.6
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 1.7e-46 189.9 172 60.5
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 1.5e-45 186.8 171 60.2
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 1.9e-45 186.4 240 49.6
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 2.1e-44 183.0 162 59.9
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 6.1e-44 181.4 161 61.5
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 1.4e-43 180.3 141 61.7
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 1.8e-43 179.9 103 82.5
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 2.6e-42 176.0 185 53.5
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 4.1e-40 168.7 156 55.8
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 1.0e-38 164.1 173 52.6
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 2.9e-38 162.5 123 62.6
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 5.0e-38 161.8 179 54.7
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 1.4e-35 153.7 144 59.0
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 2.8e-33 146.0 179 52.0
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 8.3e-33 144.4 165 50.9
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 9.1e-32 141.0 187 44.9
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 1.6e-31 140.2 167 47.3
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 3.8e-30 135.6 117 54.7
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 5.7e-26 121.7 141 48.9
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 1.7e-25 120.2 99 59.6
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 2.8e-25 119.4 117 53.0
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 2.4e-24 116.3 125 56.8
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 2.4e-24 116.3 80 72.5
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 1.2e-23 114.0 101 55.4
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 1.0e-19 100.9 85 60.0
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 8.9e-19 97.8 138 41.3
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 2.0e-18 96.7 73 74.0
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 2.9e-17 92.8 81 65.4
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 6.8e-11 71.6 169 30.8
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 1.3e-09 67.4 116 40.5
MD11G1071400 Malus domestica HOM05D005995 ORTHO05D007362 4.1e-08 62.4 42 78.6
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 3.9e-06 55.8 124 33.9
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 8.6e-06 54.7 32 75.0


User provided reference genes

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