Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0063511 Rosa chinensis HOM05D005861 ORTHO05D007151 1.2e-149 533.1 254 100.0
RcHm_v2.0_Chr5g0021381 Rosa chinensis HOM05D005861 ORTHO05D007151 2.7e-61 239.6 115 98.3
FvH4_3g13130 Fragaria vesca HOM05D005861 ORTHO05D007151 2.9e-60 236.1 115 96.5
FAN21G1611 Fragaria x ananassa HOM05D005861 ORTHO05D007151 2.9e-60 236.1 115 96.5
FAN16G2684 Fragaria x ananassa HOM05D005861 ORTHO05D007151 6.6e-60 235.0 115 95.7
Prupe.4G119100 Prunus persica HOM05D005861 ORTHO05D007151 6.6e-60 235.0 115 95.7
FAN25G2772 Fragaria x ananassa HOM05D005861 ORTHO05D007151 5.6e-59 231.9 115 93.9
MD10G1226200 Malus domestica HOM05D005861 ORTHO05D007151 9.5e-59 231.1 115 93.9
arahy.Tifrunner.gnm1.ann1.RN3XR3 Arachis hypogaea HOM05D005861 ORTHO05D007151 2.1e-58 229.9 115 92.2
MELO3C002396.2 Cucumis melo HOM05D005861 ORTHO05D007151 3.6e-58 229.2 115 93.0
Potri.003G155100 Populus trichocarpa HOM05D005861 ORTHO05D007151 1.4e-57 227.3 115 89.6
arahy.Tifrunner.gnm1.ann1.MH4CM1 Arachis hypogaea HOM05D005861 ORTHO05D007151 2.3e-57 226.5 115 91.3
Gohir.A05G011700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 3.0e-57 226.1 115 92.2
Gorai.009G012700 Gossypium raimondii HOM05D005861 ORTHO05D007151 3.0e-57 226.1 115 92.2
CsaV3_1G010060 Cucumis sativus L. HOM05D005861 ORTHO05D007151 4.0e-57 225.7 115 91.3
Cpa.g.sc30.93 Carica papaya HOM05D005861 ORTHO05D007151 6.8e-57 224.9 114 92.1
Oeu008732.1 Olea europaea HOM05D005861 ORTHO05D007151 1.2e-56 224.2 115 89.6
ClCG03G004130 Citrullus lanatus HOM05D005861 ORTHO05D007151 1.5e-56 223.8 115 91.3
Gohir.D05G012700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 2.0e-56 223.4 115 91.3
PGR004G1814 Punica granatum HOM05D005861 ORTHO05D007151 2.0e-56 223.4 115 88.7
MSTRG.18594 Avicennia marina HOM05D005861 ORTHO05D007151 3.4e-56 222.6 115 88.7
Eucgr.D00007 Eucalyptus grandis HOM05D005861 ORTHO05D007151 3.4e-56 222.6 115 89.6
Nn7g38377 Nelumbo nucifera HOM05D005861 ORTHO05D007151 3.4e-56 222.6 115 89.6
Manes.03G071200 Manihot esculenta HOM05D005861 ORTHO05D007151 4.4e-56 222.2 115 87.0
Thecc.09G140900 Theobroma cacao HOM05D005861 ORTHO05D007151 4.4e-56 222.2 115 89.6
Cfa001144 Carpinus fangiana HOM05D005861 ORTHO05D007151 5.7e-56 221.9 115 88.7
Haze_05240 Corylus avellana HOM05D005861 ORTHO05D007151 5.7e-56 221.9 115 88.7
Sed0025210 Sechium edule HOM05D005861 ORTHO05D007151 7.5e-56 221.5 115 88.7
QL11p011864 Quercus lobata HOM05D005861 ORTHO05D007151 9.8e-56 221.1 115 87.8
QL93p0142_0007 Quercus lobata HOM05D005861 ORTHO05D007151 9.8e-56 221.1 115 87.8
TWI38G1305 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 9.8e-56 221.1 115 87.0
Glyma.15G156500 Glycine max HOM05D005861 ORTHO05D007151 1.3e-55 220.7 115 88.7
TAR636G0982 Trochodendron aralioides HOM05D005861 ORTHO05D007151 2.2e-55 219.9 115 88.7
Ca_28373_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 2.9e-55 219.5 116 86.2
Ciclev10015087m.g Citrus clementina HOM05D005861 ORTHO05D007151 2.9e-55 219.5 115 86.1
Glyma.09G049800 Glycine max HOM05D005861 ORTHO05D007151 2.9e-55 219.5 115 87.8
Dinv05874 Davidia involucrata HOM05D005861 ORTHO05D007151 4.9e-55 218.8 115 87.8
Cc09_g01980 Coffea canephora HOM05D005861 ORTHO05D007151 6.4e-55 218.4 115 87.8
CSS0003156 Camellia sinensis var. sinensis HOM05D005861 ORTHO05D007151 8.3e-55 218.0 115 87.0
Atru.chr10.266 Acer truncatum HOM05D005861 ORTHO05D007151 1.8e-54 216.9 115 86.1
Phvul.009G243500 Phaseolus vulgaris HOM05D005861 ORTHO05D007151 2.4e-54 216.5 115 87.0
GSVIVG01012161001 Vitis vinifera HOM05D005861 ORTHO05D007151 2.4e-54 216.5 115 87.0
Aqoxy3G04101 Aquilegia oxysepala HOM05D005861 ORTHO05D007151 3.2e-54 216.1 115 85.2
unitig_37.g12046 Utricularia gibba HOM05D005861 ORTHO05D007151 3.2e-54 216.1 115 85.2
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 4.1e-54 215.7 115 82.6
Sc24g0002940 Simmondsia chinensis HOM05D005861 ORTHO05D007151 4.1e-54 215.7 114 86.8
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 5.4e-54 215.3 115 85.2
EL10Ac3g07109 Beta vulgaris HOM05D005861 ORTHO05D007151 7.0e-54 214.9 114 86.0
Migut.M02023 Erythranthe guttata HOM05D005861 ORTHO05D007151 9.2e-54 214.5 115 85.2
Migut.O00467 Erythranthe guttata HOM05D005861 ORTHO05D007151 9.2e-54 214.5 115 85.2
Lalb_Chr18g0052021 Lupinus albus HOM05D005861 ORTHO05D007151 9.2e-54 214.5 115 85.2
Peaxi162Scf00036g00158 Petunia axillaris HOM05D005861 ORTHO05D007151 1.6e-53 213.8 114 87.7
PGSC0003DMG401007333 Solanum tuberosum HOM05D005861 ORTHO05D007151 2.0e-53 213.4 114 86.8
THA.LOC104811881 Tarenaya hassleriana HOM05D005861 ORTHO05D007151 2.0e-53 213.4 115 82.6
VMungo1309G1344 Vigna mungo HOM05D005861 ORTHO05D007151 2.0e-53 213.4 115 86.1
AUR62040329 Chenopodium quinoa HOM05D005861 ORTHO05D007151 2.7e-53 213.0 114 83.3
HanXRQChr04g0116561 Helianthus annuus HOM05D005861 ORTHO05D007151 2.7e-53 213.0 115 82.6
Solyc02g081920.3 Solanum lycopersicum HOM05D005861 ORTHO05D007151 2.7e-53 213.0 114 86.0
Sopen02g026550 Solanum pennellii HOM05D005861 ORTHO05D007151 2.7e-53 213.0 114 86.0
SGA_v2.0_scaffold298G47711 Striga asiatica HOM05D005861 ORTHO05D007151 2.7e-53 213.0 115 85.2
CAN.G809.40 Capsicum annuum HOM05D005861 ORTHO05D007151 4.6e-53 212.2 114 86.0
AUR62039890 Chenopodium quinoa HOM05D005861 ORTHO05D007151 5.9e-53 211.8 114 82.5
PSO063G0366 Papaver somniferum HOM05D005861 ORTHO05D007151 5.9e-53 211.8 115 82.6
PSO782G3554 Papaver somniferum HOM05D005861 ORTHO05D007151 5.9e-53 211.8 115 82.6
TPR.G26579 Trifolium pratense HOM05D005861 ORTHO05D007151 5.9e-53 211.8 115 83.5
Lj6g0026320 Lotus japonicus HOM05D005861 ORTHO05D007151 7.8e-53 211.5 115 85.2
Psat1g150560 Pisum sativum HOM05D005861 ORTHO05D007151 1.0e-52 211.1 115 83.5
vmacro03562 Vaccinium macrocarpon HOM05D005861 ORTHO05D007151 1.0e-52 211.1 115 82.6
Carub.0007s2100 Capsella rubella HOM05D005861 ORTHO05D007151 1.3e-52 210.7 115 82.6
ECA236G3447 Erigeron canadensis HOM05D005861 ORTHO05D007151 1.3e-52 210.7 115 80.9
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.7e-52 210.3 115 83.5
Nitab4.5_0000632g0140 Nicotiana tabacum HOM05D005861 ORTHO05D007151 2.3e-52 209.9 114 85.1
Sp7g18560 Schrenkiella parvula HOM05D005861 ORTHO05D007151 2.3e-52 209.9 115 82.6
AT4G20130 Arabidopsis thaliana HOM05D005861 ORTHO05D007151 3.9e-52 209.1 115 80.9
BcaB03g11658 Brassica carinata HOM05D005861 ORTHO05D007151 6.6e-52 208.4 115 81.7
BcaC01g00656 Brassica carinata HOM05D005861 ORTHO05D007151 6.6e-52 208.4 115 81.7
C03p82790 Brassica napus HOM05D005861 ORTHO05D007151 6.6e-52 208.4 115 81.7
BolC3t20561H Brassica oleracea HOM05D005861 ORTHO05D007151 6.6e-52 208.4 115 81.7
Thhalv10027180m.g Eutrema salsugineum HOM05D005861 ORTHO05D007151 6.6e-52 208.4 115 81.7
CARHR226960 Cardamine hirsuta HOM05D005861 ORTHO05D007151 8.6e-52 208.0 115 78.3
A08p14640 Brassica napus HOM05D005861 ORTHO05D007151 1.9e-51 206.8 115 80.9
BraA08t33451Z Brassica rapa HOM05D005861 ORTHO05D007151 1.9e-51 206.8 115 80.9
Medtr2g035660 Medicago truncatula HOM05D005861 ORTHO05D007151 1.9e-51 206.8 115 81.7
Ah.08g212320 Amaranthus hybridus HOM05D005861 ORTHO05D007151 3.3e-51 206.1 114 82.5
AL7G33690 Arabidopsis lyrata HOM05D005861 ORTHO05D007151 3.3e-51 206.1 115 80.9
Nitab4.5_0000844g0330 Nicotiana tabacum HOM05D005861 ORTHO05D007151 5.6e-51 205.3 114 84.2
Aa31LG6G2540 Aethionema arabicum HOM05D005861 ORTHO05D007151 1.8e-49 200.3 115 78.3
AagrBONN_evm.TU.Sc2ySwM_344.4889 Anthoceros agrestis HOM05D005861 ORTHO05D007151 1.6e-45 187.2 115 72.2
Mapoly0003s0096 Marchantia polymorpha HOM05D005861 ORTHO05D007151 1.7e-44 183.7 114 70.2
Gorai.N022300 Gossypium raimondii HOM05D005861 ORTHO05D007151 6.6e-44 181.8 115 79.1
Pp3c8_21700 Physcomitrium patens HOM05D005861 ORTHO05D007151 1.9e-43 180.3 115 68.7
SMO331G0022 Selaginella moellendorffii HOM05D005861 ORTHO05D007151 4.0e-41 172.6 115 62.6
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 3.4e-40 169.5 115 72.2
TWI63G1685 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 6.4e-39 165.2 115 71.3
Gohir.D05G012400 Gossypium hirsutum HOM05D005861 ORTHO05D007151 2.4e-38 163.3 83 90.4
Zm00001eb345040 Zea mays HOM05D005861 ORTHO05D007151 1.2e-37 161.0 83 88.0
Lj4g0007893 Lotus japonicus HOM05D005861 ORTHO05D007151 3.6e-34 149.4 85 80.0
CiPaw.09G138900 Carya illinoinensis HOM05D005861 ORTHO05D007151 3.1e-33 146.4 72 94.4
Lj3g0008154 Lotus japonicus HOM05D005861 ORTHO05D007151 3.1e-33 146.4 85 78.8
RcHm_v2.0_Chr3g0456081 Rosa chinensis HOM05D005861 ORTHO05D007151 1.5e-32 144.1 72 95.8
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 2.6e-32 143.3 72 90.3
Cfa001273 Carpinus fangiana HOM05D005861 ORTHO05D007151 3.8e-31 139.4 73 89.0
HPP92_009502 Vanilla planifolia HOM05D005861 ORTHO05D007151 3.8e-31 139.4 95 67.4
Duzib187G1938 Durio zibethinus HOM05D005861 ORTHO05D007151 2.4e-30 136.7 72 87.5
CBR_g61479 Chara braunii HOM05D005861 ORTHO05D007151 9.2e-30 134.8 111 59.5
Lj1g0019510 Lotus japonicus HOM05D005861 ORTHO05D007151 2.7e-29 133.3 67 88.1
Os05g0587200 Oryza sativa ssp. japonica HOM05D005861 ORTHO05D007151 2.7e-29 133.3 72 83.3
Lj6g0014924 Lotus japonicus HOM05D005861 ORTHO05D007151 2.3e-28 130.2 72 83.3
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 4.0e-25 119.4 115 54.8
Duzib168G0529 Durio zibethinus HOM05D005861 ORTHO05D007151 4.0e-25 119.4 115 54.8
CDE02G4422 Ceratophyllum demersum HOM05D005861 ORTHO05D007151 5.2e-25 119.0 62 85.5
A04p29830 Brassica napus HOM05D005861 ORTHO05D007151 3.4e-24 116.3 109 57.8
BraA04t18443Z Brassica rapa HOM05D005861 ORTHO05D007151 1.1e-22 111.3 109 56.9
Hund25553 Selenicereus undatus HOM05D005861 ORTHO05D007151 1.1e-22 111.3 114 51.8
A03p17620 Brassica napus HOM05D005861 ORTHO05D007151 2.4e-14 83.6 48 81.2
FvH4_6g44830 Fragaria vesca HOM05D003207 ORTHO05D003615 1.1e-09 68.2 64 57.8
FAN14G3755 Fragaria x ananassa HOM05D003207 ORTHO05D003615 2.6e-08 63.5 47 66.0
RcHm_v2.0_Chr2g0162011 Rosa chinensis HOM05D003207 ORTHO05D003615 2.6e-08 63.5 47 66.0
COL.COLO4_13688 Corchorus olitorius HOM05D003207 ORTHO05D003615 3.4e-08 63.2 47 66.0
FAN02G3322 Fragaria x ananassa HOM05D003207 ORTHO05D003615 4.5e-08 62.8 49 61.2
FAN09G2723 Fragaria x ananassa HOM05D003207 ORTHO05D003615 9.9e-08 61.6 47 61.7
A03p17610 Brassica napus HOM05D005861 ORTHO05D007151 1.3e-07 61.2 33 78.8
Sed0003278 Sechium edule HOM05D003207 ORTHO05D003615 1.7e-07 60.8 47 61.7
Thecc.02G172700 Theobroma cacao HOM05D003207 ORTHO05D003615 2.2e-07 60.5 33 84.8
Sed0012891 Sechium edule HOM05D003207 ORTHO05D003615 3.8e-07 59.7 88 40.9
FAN05G4492 Fragaria x ananassa HOM05D003207 ORTHO05D003615 4.9e-07 59.3 47 61.7
TWI18G0519 Tripterygium wilfordii HOM05D003207 ORTHO05D003615 4.9e-07 59.3 76 46.1
Haze_13097 Corylus avellana HOM05D003207 ORTHO05D003615 6.4e-07 58.9 33 81.8
Duzib248G0651 Durio zibethinus HOM05D003207 ORTHO05D003615 6.4e-07 58.9 33 78.8
MD17G1082800 Malus domestica HOM05D003207 ORTHO05D003615 6.4e-07 58.9 33 81.8
Gohir.A13G056800 Gossypium hirsutum HOM05D003207 ORTHO05D003615 1.1e-06 58.2 47 61.7
Gohir.D13G065100 Gossypium hirsutum HOM05D003207 ORTHO05D003615 1.1e-06 58.2 47 61.7
Gorai.013G074000 Gossypium raimondii HOM05D003207 ORTHO05D003615 1.1e-06 58.2 47 61.7
Atru.chr6.3059 Acer truncatum HOM05D003207 ORTHO05D003615 1.9e-06 57.4 47 59.6
Gohir.A04G105400 Gossypium hirsutum HOM05D003207 ORTHO05D003615 1.9e-06 57.4 33 81.8
Gohir.D04G145200 Gossypium hirsutum HOM05D003207 ORTHO05D003615 1.9e-06 57.4 33 81.8
Gorai.012G131200 Gossypium raimondii HOM05D003207 ORTHO05D003615 1.9e-06 57.4 33 81.8
Ah.01g005240 Amaranthus hybridus HOM05D003207 ORTHO05D003615 3.2e-06 56.6 47 57.4
Prupe.3G232400 Prunus persica HOM05D003207 ORTHO05D003615 3.2e-06 56.6 33 78.8
Manes.13G151100 Manihot esculenta HOM05D003207 ORTHO05D003615 4.2e-06 56.2 47 59.6
Potri.019G109100 Populus trichocarpa HOM05D003207 ORTHO05D003615 4.2e-06 56.2 45 57.8
MSTRG.14185 Avicennia marina HOM05D003207 ORTHO05D003615 5.5e-06 55.8 47 57.4
AUR62037379 Chenopodium quinoa HOM05D003207 ORTHO05D003615 5.5e-06 55.8 47 59.6
AUR62038939 Chenopodium quinoa HOM05D003207 ORTHO05D003615 5.5e-06 55.8 47 59.6
ClCG02G017380 Citrullus lanatus HOM05D003207 ORTHO05D003615 5.5e-06 55.8 47 57.4
Cpa.g.sc34.107 Carica papaya HOM05D003207 ORTHO05D003615 9.3e-06 55.1 49 57.1
MELO3C013527.2 Cucumis melo HOM05D003207 ORTHO05D003615 9.3e-06 55.1 47 55.3
Gohir.A03G159800 Gossypium hirsutum HOM05D003207 ORTHO05D003615 9.3e-06 55.1 55 49.1
Gohir.D02G182900 Gossypium hirsutum HOM05D003207 ORTHO05D003615 9.3e-06 55.1 55 49.1
TWI36G0346 Tripterygium wilfordii HOM05D003207 ORTHO05D003615 9.3e-06 55.1 30 80.0


User provided reference genes

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