Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0058951 Rosa chinensis HOM05D001780 ORTHO05D022113 6.3e-21 103.2 54 100.0
RcHm_v2.0_Chr2g0162141 Rosa chinensis HOM05D001780 ORTHO05D022113 2.0e-14 81.6 50 90.0
FAN17G0722 Fragaria x ananassa HOM05D001780 ORTHO05D005322 4.3e-09 63.9 43 79.1
MD13G1168400 Malus domestica HOM05D001780 ORTHO05D005322 7.3e-09 63.2 42 81.0
MD16G1168800 Malus domestica HOM05D001780 ORTHO05D005322 7.3e-09 63.2 42 81.0
PSO170G3623 Papaver somniferum HOM05D001780 ORTHO05D005322 2.1e-08 61.6 42 78.6
PSO210G4510 Papaver somniferum HOM05D001780 ORTHO05D005322 2.1e-08 61.6 42 78.6
FvH4_4g18060 Fragaria vesca HOM05D001780 ORTHO05D005322 2.8e-08 61.2 42 78.6
FAN07G2352 Fragaria x ananassa HOM05D000639 ORTHO05D005322 2.8e-08 61.2 42 78.6
FAN12G1911 Fragaria x ananassa HOM05D001780 ORTHO05D005322 2.8e-08 61.2 42 78.6
FAN12G3693 Fragaria x ananassa HOM05D001780 ORTHO05D005322 2.8e-08 61.2 42 78.6
Prupe.1G136500 Prunus persica HOM05D001780 ORTHO05D005322 2.8e-08 61.2 42 78.6
RcHm_v2.0_Chr4g0422271 Rosa chinensis HOM05D001780 ORTHO05D005322 2.8e-08 61.2 42 78.6
TAR362G0169 Trochodendron aralioides HOM05D001780 ORTHO05D005322 2.3e-07 58.2 42 71.4
CDE01G0296 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 3.1e-07 57.8 42 71.4
Nn3g18527 Nelumbo nucifera HOM05D001780 ORTHO05D005322 3.1e-07 57.8 42 71.4
Cfa015386 Carpinus fangiana HOM05D001780 ORTHO05D005322 4.0e-07 57.4 42 73.8
Haze_01199 Corylus avellana HOM05D001780 ORTHO05D005322 4.0e-07 57.4 42 73.8
CANSAT78G1960 Cannabis sativa HOM05D001780 ORTHO05D005322 5.2e-07 57.0 38 76.3
THA.LOC104818925 Tarenaya hassleriana HOM05D001780 ORTHO05D005322 5.2e-07 57.0 42 71.4
EL10Ac9g22594 Beta vulgaris HOM05D001780 ORTHO05D005322 6.8e-07 56.6 42 71.4
CARHR182680 Cardamine hirsuta HOM05D001780 ORTHO05D005322 8.9e-07 56.2 38 76.3
QL06p008943 Quercus lobata HOM05D001780 ORTHO05D005322 8.9e-07 56.2 44 68.2
CiPaw.01G148500 Carya illinoinensis HOM05D001780 ORTHO05D005322 1.2e-06 55.8 38 76.3
CDE12G0042 Ceratophyllum demersum HOM05D001780 ORTHO05D005322 1.2e-06 55.8 42 69.0
COL.COLO4_04960 Corchorus olitorius HOM05D001780 ORTHO05D005322 1.2e-06 55.8 42 71.4
Duzib160G0626 Durio zibethinus HOM05D001780 ORTHO05D005322 1.2e-06 55.8 42 71.4
Eucgr.H03916 Eucalyptus grandis HOM05D001780 ORTHO05D005322 1.2e-06 55.8 42 73.8
Manes.03G195400 Manihot esculenta HOM05D001780 ORTHO05D005322 1.2e-06 55.8 42 71.4
PGR004G0386 Punica granatum HOM05D001780 ORTHO05D005322 1.2e-06 55.8 42 73.8
TWI09G1280 Tripterygium wilfordii HOM05D001780 ORTHO05D005322 1.2e-06 55.8 42 71.4
Ah.01g003180 Amaranthus hybridus HOM05D001780 ORTHO05D005322 1.5e-06 55.5 42 69.0
AL8G22410 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 1.5e-06 55.5 38 73.7
AL8G22430 Arabidopsis lyrata HOM05D001780 ORTHO05D005322 1.5e-06 55.5 38 73.7
AT5G49030 Arabidopsis thaliana HOM05D001780 ORTHO05D005322 1.5e-06 55.5 38 73.7
A06p38600 Brassica napus HOM05D001780 ORTHO05D005322 1.5e-06 55.5 38 73.7
C07p39660 Brassica napus HOM05D001780 ORTHO05D005322 1.5e-06 55.5 38 73.7
Carub.0008s0885 Capsella rubella HOM05D001780 ORTHO05D005322 1.5e-06 55.5 38 73.7
Cpa.g.sc16.173 Carica papaya HOM05D001780 ORTHO05D005322 1.5e-06 55.5 42 71.4
Dinv29743 Davidia involucrata HOM05D001780 ORTHO05D005322 1.5e-06 55.5 42 71.4
Thhalv10003524m.g Eutrema salsugineum HOM05D001780 ORTHO05D005322 1.5e-06 55.5 38 73.7
Sp2g19410 Schrenkiella parvula HOM05D001780 ORTHO05D005322 1.5e-06 55.5 38 73.7
C02p57010 Brassica napus HOM05D001780 ORTHO05D005322 2.0e-06 55.1 46 58.7
BolC2t11771H Brassica oleracea HOM05D001780 ORTHO05D005322 2.0e-06 55.1 46 58.7
BolC7t44489H Brassica oleracea HOM05D001780 ORTHO05D005322 2.0e-06 55.1 38 71.1
Cc03_g01900 Coffea canephora HOM05D001780 ORTHO05D005322 2.0e-06 55.1 50 56.0
vmacro08154 Vaccinium macrocarpon HOM05D001780 ORTHO05D005322 2.0e-06 55.1 45 66.7
AUR62014941 Chenopodium quinoa HOM05D001780 ORTHO05D005322 2.6e-06 54.7 42 66.7
AUR62029200 Chenopodium quinoa HOM05D001780 ORTHO05D005322 2.6e-06 54.7 42 66.7
Phvul.003G105600 Phaseolus vulgaris HOM05D001780 ORTHO05D005322 2.6e-06 54.7 42 69.0
Thecc.02G218100 Theobroma cacao HOM05D001780 ORTHO05D005322 2.6e-06 54.7 38 73.7
VMungo1215G2474 Vigna mungo HOM05D001780 ORTHO05D005322 2.6e-06 54.7 42 69.0
Actinidia40255 Actinidia chinensis HOM05D001780 ORTHO05D005322 3.4e-06 54.3 39 71.8
Lalb_Chr15g0083491 Lupinus albus HOM05D001780 ORTHO05D005322 3.4e-06 54.3 38 73.7
CsaV3_3G014640 Cucumis sativus L. HOM05D001780 ORTHO05D005322 5.8e-06 53.5 42 71.4
Migut.G00161 Erythranthe guttata HOM05D001780 ORTHO05D005322 5.8e-06 53.5 42 66.7
Hund03251 Selenicereus undatus HOM05D001780 ORTHO05D005322 5.8e-06 53.5 42 66.7
DCAR_002465 Daucus carota HOM05D001780 ORTHO05D005322 7.5e-06 53.1 48 62.5
Lj6g0027734 Lotus japonicus HOM05D001780 ORTHO05D005322 7.5e-06 53.1 38 71.1
ATR0796G005 Amborella trichopoda HOM05D001780 ORTHO05D005322 9.8e-06 52.8 42 69.0
Aqoxy2G02980_Aqoxy2G02981 Aquilegia oxysepala HOM05D001780 ORTHO05D005322 9.8e-06 52.8 38 68.4
Glyma.17G026600 Glycine max HOM05D001780 ORTHO05D005322 9.8e-06 52.8 42 66.7
Gohir.A09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 9.8e-06 52.8 38 71.1
Gohir.D09G080700 Gossypium hirsutum HOM05D001780 ORTHO05D005322 9.8e-06 52.8 38 71.1
Gorai.006G096300 Gossypium raimondii HOM05D001780 ORTHO05D005322 9.8e-06 52.8 38 71.1


User provided reference genes

Program Settings