Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 2175.6 1122 100.0
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1971.4 1124 91.3
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1954.5 1118 91.1
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1943.7 1147 89.3
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1788.5 1128 84.4
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1771.9 1129 83.6
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1747.3 1126 82.8
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1645.6 1137 76.9
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1622.1 1134 75.3
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1573.5 1137 73.4
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1560.8 1135 72.6
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1560.0 1140 72.5
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1557.0 1143 73.3
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1552.3 1150 72.6
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1552.0 1131 73.2
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1552.0 1139 72.5
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1549.3 1138 72.8
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1546.2 1143 72.4
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1538.1 1128 72.6
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1537.3 1135 72.6
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1534.6 1136 71.9
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1525.8 1136 71.7
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1521.5 1134 70.6
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1517.3 1145 71.5
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1516.1 1134 71.2
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1514.2 1135 71.2
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1510.4 1136 71.2
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1510.4 1130 71.4
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1508.4 1146 71.6
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1505.0 1130 70.7
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1503.8 1144 71.2
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1497.6 1135 71.0
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1497.3 1129 70.2
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1491.9 1132 70.0
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1491.1 1128 69.9
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1484.9 1155 69.1
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1483.4 1147 70.1
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1478.0 1127 68.9
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1472.2 1140 70.0
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1471.1 1141 69.6
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1461.4 1134 69.0
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1461.0 1138 70.1
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1454.9 1127 69.6
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1427.9 1138 67.8
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1425.6 1089 69.7
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1409.8 1138 67.3
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1404.4 1131 66.6
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1399.8 1142 66.3
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1399.8 1097 69.9
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1393.3 1138 65.9
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1392.9 1086 69.7
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1389.8 1145 66.6
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1389.4 1086 69.2
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1386.3 1142 66.9
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1386.3 1201 64.4
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1379.8 1137 65.5
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1379.8 1141 67.0
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1376.3 1141 65.2
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1369.8 1139 65.2
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1365.5 1093 66.7
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1365.1 1157 64.8
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1358.2 1136 65.4
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1356.7 1119 66.5
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1350.5 1143 64.6
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1343.2 1144 64.3
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1339.7 1105 66.5
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1338.6 1145 63.7
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1333.5 1141 64.2
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1332.4 1139 64.4
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1331.6 1160 63.0
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1324.3 1120 63.9
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1322.8 1147 63.8
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1317.8 1123 63.0
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1316.2 1099 65.2
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1315.8 1080 65.5
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1309.3 1091 64.5
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1306.2 1082 65.0
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1299.6 1091 64.3
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1277.7 1092 63.4
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1275.0 1083 64.4
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1274.6 1096 63.8
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1269.2 1095 63.7
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1268.1 1014 68.9
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1253.8 1086 63.1
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1234.9 945 68.8
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1232.2 1086 62.5
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1231.1 943 69.0
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1216.1 1294 55.8
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1191.8 1014 66.6
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1169.1 1124 59.3
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1163.7 1103 57.3
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1157.5 1099 57.1
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1154.8 1109 59.5
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1153.3 966 66.3
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1151.7 1355 52.0
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1140.2 945 64.4
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1104.7 1141 56.4
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1100.1 1075 57.9
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 1.4e-308 1063.1 927 63.9
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 3.1e-287 992.3 1050 55.7
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 7.6e-286 987.6 1025 57.0
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.5e-281 972.6 872 63.9
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 1.1e-236 824.3 800 60.0
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 5.2e-234 815.5 1127 42.9
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 8.3e-232 808.1 1116 43.3
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 9.2e-231 804.7 687 62.9
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 2.3e-229 800.0 803 57.4
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 7.3e-228 795.0 990 51.5
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 2.1e-227 793.5 1102 42.1
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 6.8e-226 788.5 1128 41.0
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 9.8e-225 784.6 898 54.1
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.6e-222 777.3 901 52.9
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 6.0e-222 775.4 1114 41.6
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 3.1e-218 763.1 647 65.8
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 8.3e-216 755.0 650 63.5
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 4.3e-204 716.1 521 70.6
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.4e-191 674.5 1064 38.3
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 3.9e-189 666.4 522 66.7
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 8.4e-168 595.5 516 60.9
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 7.1e-167 592.4 421 73.9
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 2.7e-166 590.5 421 73.9
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 1.7e-147 528.1 490 59.6
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 1.2e-134 485.3 402 66.2
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.1e-118 431.4 346 65.9
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 3.3e-111 407.5 666 41.1
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 6.8e-109 399.8 228 85.5
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 2.3e-101 374.8 817 32.8
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 3.4e-100 370.9 358 57.3
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 4.3e-95 354.0 351 55.0
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 1.2e-89 335.9 186 85.5
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 2.5e-87 328.2 344 56.1
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 2.3e-80 305.1 230 71.3
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 4.4e-76 290.8 514 38.5
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 7.4e-71 273.5 189 75.7
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 2.8e-70 271.6 1097 24.5
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 8.1e-70 270.0 198 67.2
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 8.4e-67 260.0 167 85.0
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 8.4e-67 260.0 167 85.0
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 7.1e-66 256.9 141 87.9
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 5.1e-64 250.8 1275 21.9
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 4.3e-63 247.7 141 86.5
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 4.8e-62 244.2 145 82.1
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 7.6e-60 236.9 241 54.4
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 3.9e-56 224.6 256 50.4
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 3.8e-51 208.0 116 87.1
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 8.5e-51 206.8 544 32.9
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 3.2e-50 204.9 118 84.7
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 9.3e-50 203.4 116 84.5
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 9.4e-42 176.8 141 69.5
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 9.4e-42 176.8 134 76.9
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 1.0e-40 173.3 145 61.4
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 1.1e-39 169.9 131 76.3
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.1e-37 163.3 191 53.4
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 5.3e-37 161.0 147 62.6
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.2e-36 159.8 134 70.9
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 7.7e-36 157.1 82 91.5
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 3.8e-35 154.8 182 51.1
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 5.0e-35 154.5 88 96.6
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 3.2e-34 151.8 83 85.5
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 1.6e-33 149.4 83 84.3
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 3.7e-30 138.3 112 63.4
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 8.2e-30 137.1 113 67.3
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 7.7e-28 130.6 159 50.9
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 7.2e-26 124.0 153 45.1
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 2.7e-25 122.1 134 49.3
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 1.5e-23 116.3 1096 20.3
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 1.7e-22 112.8 85 65.9
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.7e-22 112.8 116 56.9
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 6.3e-22 110.9 103 55.3
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 3.1e-21 108.6 109 62.4
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.1e-18 100.1 95 55.8
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 3.7e-14 85.1 88 52.3
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 5.9e-12 77.8 49 79.6
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 3.6e-09 68.6 43 74.4
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 5.7e-07 61.2 60 58.3
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 8.3e-06 57.4 45 57.8


User provided reference genes

Program Settings