Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 2.5e-220 768.5 379 100.0
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-190 669.5 391 87.2
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.5e-190 668.3 391 87.0
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 3.5e-190 668.3 391 87.2
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 2.9e-189 665.2 391 87.0
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.9e-189 665.2 391 86.4
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 7.2e-188 660.6 387 86.8
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 1.6e-179 632.9 391 81.6
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 4.4e-177 624.8 391 80.3
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 3.7e-176 621.7 391 79.8
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 8.3e-176 620.5 391 79.5
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.1e-175 620.2 391 79.3
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.4e-175 619.8 391 79.8
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.4e-175 619.8 391 79.5
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 2.4e-175 619.0 391 79.5
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.4e-175 619.0 386 79.8
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 4.1e-175 618.2 391 79.3
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 4.1e-175 618.2 386 80.1
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 7.0e-175 617.5 391 79.0
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 9.2e-175 617.1 386 79.8
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 2.7e-174 615.5 391 78.8
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 3.5e-174 615.1 386 79.3
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 4.5e-174 614.8 391 78.8
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 1.0e-173 613.6 391 77.7
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.3e-173 613.2 391 78.0
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.7e-173 612.8 391 78.8
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 2.3e-173 612.5 387 79.8
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.9e-173 612.1 391 78.5
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 3.8e-173 611.7 387 79.6
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 5.0e-173 611.3 391 78.3
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 1.1e-172 610.1 387 79.1
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.5e-172 609.8 391 78.3
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.5e-172 609.8 391 78.3
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 2.5e-172 609.0 386 79.8
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 3.3e-172 608.6 391 77.7
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 4.3e-172 608.2 387 79.1
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 4.3e-172 608.2 391 78.8
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 9.5e-172 607.1 387 78.8
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 2.1e-171 605.9 391 78.3
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 2.8e-171 605.5 391 78.0
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 6.1e-171 604.4 391 77.7
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 8.0e-171 604.0 397 76.8
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.4e-170 603.2 391 77.7
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 2.3e-170 602.4 386 77.7
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 2.3e-170 602.4 391 76.0
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 4.0e-170 601.7 391 78.0
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 5.2e-170 601.3 391 77.5
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 5.2e-170 601.3 390 77.7
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 5.2e-170 601.3 391 78.5
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 8.9e-170 600.5 391 78.0
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.2e-169 600.1 387 77.8
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.2e-169 600.1 391 75.7
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 2.0e-169 599.4 390 76.7
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 2.0e-169 599.4 391 77.7
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 2.0e-169 599.4 391 77.2
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 2.6e-169 599.0 391 77.7
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 2.6e-169 599.0 391 77.0
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 3.4e-169 598.6 389 77.4
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 4.4e-169 598.2 391 76.7
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 4.4e-169 598.2 391 76.2
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 4.4e-169 598.2 391 77.5
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 5.7e-169 597.8 391 76.5
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.7e-168 596.3 388 78.1
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 1.7e-168 596.3 391 76.5
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 2.2e-168 595.9 391 77.0
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.7e-168 595.1 387 77.8
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 4.9e-168 594.7 391 76.5
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 6.4e-168 594.3 384 77.1
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 8.3e-168 594.0 384 76.0
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 8.3e-168 594.0 391 75.4
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 1.1e-167 593.6 390 76.4
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.4e-167 592.4 387 76.2
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 3.2e-167 592.0 387 76.2
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 3.2e-167 592.0 387 75.5
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 3.2e-167 592.0 394 76.1
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 4.1e-167 591.7 391 75.7
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 4.1e-167 591.7 387 75.7
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 4.1e-167 591.7 391 75.7
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 7.0e-167 590.9 391 75.2
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.2e-166 590.1 384 76.3
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 1.2e-166 590.1 384 75.8
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 3.5e-166 588.6 384 75.5
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 4.6e-166 588.2 387 75.2
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 5.9e-166 587.8 386 76.4
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 5.9e-166 587.8 384 75.3
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 7.8e-166 587.4 387 74.7
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.3e-165 586.6 384 76.0
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.7e-165 586.3 391 74.7
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 1.7e-165 586.3 391 75.2
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 2.3e-165 585.9 384 76.0
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 5.0e-165 584.7 383 76.2
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 6.6e-165 584.3 384 75.3
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 1.1e-164 583.6 384 75.5
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 3.3e-164 582.0 389 75.3
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 4.3e-164 581.6 387 74.2
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 9.5e-164 580.5 421 71.5
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 2.8e-163 578.9 387 73.6
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 8.0e-163 577.4 429 69.2
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 5.2e-162 574.7 387 73.6
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 1.3e-160 570.1 339 86.1
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.2e-160 569.3 392 74.0
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 8.3e-160 567.4 387 74.4
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.7e-157 559.7 391 71.9
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 3.0e-157 558.9 381 73.8
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 5.2e-154 548.1 387 70.5
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 2.0e-153 546.2 387 70.5
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 1.7e-152 543.1 390 71.0
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.1e-150 536.2 339 79.9
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.2e-147 526.9 413 67.1
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.5e-145 520.0 381 69.6
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 2.2e-144 516.2 339 76.4
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 3.2e-143 512.3 383 69.5
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 4.1e-143 511.9 333 77.8
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 7.1e-143 511.1 339 75.2
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.3e-141 506.9 267 94.4
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 1.3e-136 490.3 384 65.1
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.1e-135 487.3 266 89.1
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 2.1e-134 483.0 339 73.2
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 2.7e-134 482.6 274 84.3
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 4.8e-131 471.9 383 66.1
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 1.5e-129 466.8 353 70.5
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.5e-124 449.5 328 70.7
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-123 446.8 281 82.9
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 2.8e-123 446.0 304 74.0
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 2.6e-121 439.5 392 58.7
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.8e-121 438.3 228 94.3
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 5.8e-121 438.3 362 64.6
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.9e-111 406.8 273 75.8
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 1.2e-110 404.1 391 57.3
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.3e-99 367.5 401 49.4
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 4.2e-95 352.4 274 66.1
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 2.1e-94 350.1 259 69.9
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.4e-90 336.7 398 46.0
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 2.2e-88 330.1 255 66.3
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 7.4e-84 315.1 252 64.7
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 2.2e-80 303.5 310 58.7
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 6.5e-80 302.0 284 59.2
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.1e-74 284.6 251 62.2
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 3.0e-61 240.0 135 83.0
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.4e-53 214.5 260 48.5
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.4e-51 205.7 194 60.3
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 6.4e-51 205.7 120 81.7
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 5.6e-47 192.6 120 77.5
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 4.7e-46 189.5 331 39.3
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.7e-40 171.0 125 69.6
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 4.3e-31 139.8 157 48.4
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 8.4e-27 125.6 85 70.6
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 2.4e-26 124.0 72 79.2
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 4.2e-26 123.2 68 83.8
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 5.6e-23 112.8 213 37.1
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 2.1e-22 110.9 72 73.6
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 6.2e-22 109.4 60 85.0
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 8.4e-19 99.0 61 78.7
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.2e-18 97.1 93 55.9
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 1.1e-13 82.0 61 70.5
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 5.3e-13 79.7 43 83.7
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 5.8e-12 76.3 42 85.7
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 1.4e-10 71.6 36 86.1
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 5.4e-10 69.7 40 77.5
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 6.2e-06 56.2 31 83.9


User provided reference genes

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