Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0052311 Rosa chinensis HOM05D003172 ORTHO05D003708 1.6e-48 195.7 93 100.0
EL10Ac3g06798 Beta vulgaris HOM05D003172 ORTHO05D003708 5.3e-07 57.8 31 80.6
Dinv14587 Davidia involucrata HOM05D003172 ORTHO05D003708 5.3e-07 57.8 31 80.6
Rhsim04G0086600 Rhododendron simsii HOM05D003172 ORTHO05D003708 5.3e-07 57.8 31 80.6
vmacro09149 Vaccinium macrocarpon HOM05D003172 ORTHO05D003708 5.3e-07 57.8 31 80.6
CSS0035842 Camellia sinensis var. sinensis HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
CANSAT78G1302 Cannabis sativa HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
CAN.G662.2 Capsicum annuum HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
CiPaw.09G000900 Carya illinoinensis HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Ca_08256_v3 Cicer arietinum L. HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Ciclev10018788m.g Citrus clementina HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Cc06_g21440 Coffea canephora HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
COL.COLO4_13621 Corchorus olitorius HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Duzib106G1828 Durio zibethinus HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Duzib177G0131 Durio zibethinus HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
FvH4_5g18220 Fragaria vesca HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
FAN04G3171 Fragaria x ananassa HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
FAN08G0762 Fragaria x ananassa HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
FAN13G1822 Fragaria x ananassa HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
FAN18G2753 Fragaria x ananassa HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Glyma.16G042600 Glycine max HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Glyma.19G109500 Glycine max HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Gohir.A11G257900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Gohir.A13G105600 Gossypium hirsutum HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Gohir.D11G267900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Gohir.D13G109400 Gossypium hirsutum HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Gorai.007G287600 Gossypium raimondii HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Gorai.013G123000 Gossypium raimondii HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Hma1.2p1_0183F.1_g080920 Hydrangea macrophylla HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Lalb_Chr06g0173911 Lupinus albus HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Lalb_Chr14g0364401 Lupinus albus HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Lalb_Chr21g0317121 Lupinus albus HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
MD06G1237800 Malus domestica HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
MD14G1244600 Malus domestica HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Manes.08G149400 Manihot esculenta HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Manes.09G142400 Manihot esculenta HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Medtr7g085350 Medicago truncatula HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Nitab4.5_0003153g0030 Nicotiana tabacum HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Oeu035612.2 Olea europaea HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Peaxi162Scf00076g00918 Petunia axillaris HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Psat3g089480 Pisum sativum HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Potri.013G059800 Populus trichocarpa HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Potri.019G032800 Populus trichocarpa HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Prupe.5G242100 Prunus persica HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
RcHm_v2.0_Chr7g0177371 Rosa chinensis HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Sabra19G0041100 Salix brachista HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Solyc12g019860.2 Solanum lycopersicum HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Sopen12g010260 Solanum pennellii HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
SGA_v2.0_scaffold94G28397 Striga asiatica HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Thecc.05G292800 Theobroma cacao HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
TPR.G5918 Trifolium pratense HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
VMungo1383G1523 Vigna mungo HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
GSVIVG01033382001 Vitis vinifera HOM05D003172 ORTHO05D003708 6.9e-07 57.4 31 80.6
Lsat_1_v5_gn_6_36740 Lactuca sativa HOM05D003172 ORTHO05D003708 9.0e-07 57.0 31 77.4
C02p09750 Brassica napus HOM05D003172 ORTHO05D003708 1.2e-06 56.6 31 77.4
BolC2t06884H Brassica oleracea HOM05D003172 ORTHO05D003708 1.2e-06 56.6 31 77.4
Glyma.02G071300 Glycine max HOM05D003172 ORTHO05D003708 1.2e-06 56.6 31 77.4
Glyma.16G152500 Glycine max HOM05D003172 ORTHO05D003708 1.2e-06 56.6 31 77.4
Phvul.004G079000 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 1.2e-06 56.6 31 77.4
VMungo0464G1094 Vigna mungo HOM05D003172 ORTHO05D003708 1.2e-06 56.6 31 77.4
Aqoxy2G00568 Aquilegia oxysepala HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
AL6G29440 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
AT5G18230 Arabidopsis thaliana HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
arahy.Tifrunner.gnm1.ann1.1H4ABR Arachis hypogaea HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
arahy.Tifrunner.gnm1.ann1.74GIZX Arachis hypogaea HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
arahy.Tifrunner.gnm1.ann1.TX5S28 Arachis hypogaea HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
arahy.Tifrunner.gnm1.ann1.WX09DK Arachis hypogaea HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
BcaB01g05182 Brassica carinata HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
BcaB08g36694 Brassica carinata HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
BcaC04g18714 Brassica carinata HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
BcaNung04946 Brassica carinata HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
A03p08720 Brassica napus HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
A10p21290 Brassica napus HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
C03p10170 Brassica napus HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
C09p58750 Brassica napus HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
BolC3t13502H Brassica oleracea HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
BolC9t58717H Brassica oleracea HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
BraA03t10195Z Brassica rapa HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
BraA10t44192Z Brassica rapa HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
Carub.0006s1651 Capsella rubella HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
CARHR194830 Cardamine hirsuta HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
Cfa016432 Carpinus fangiana HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
Haze_19406 Corylus avellana HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
Dinv37006 Davidia involucrata HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
Eucgr.A02083 Eucalyptus grandis HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
Thhalv10012672m.g Eutrema salsugineum HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
HanXRQChr09g0252941 Helianthus annuus HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
HanXRQChr09g0266331 Helianthus annuus HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
Lj2C357G5 Lonicera japonica HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
MBI11_g10542_MAGBIO Magnolia biondii HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
PSO339G0422 Papaver somniferum HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
PSO384G1776 Papaver somniferum HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
Sp6g26090 Schrenkiella parvula HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
SEGI_16964 Sequoiadendron giganteum HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
SGA_v2.0_scaffold274G46522 Striga asiatica HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
TWI32G0690 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
TWI34G0902 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
TAR623G0379 Trochodendron aralioides HOM05D003172 ORTHO05D003708 1.5e-06 56.2 31 77.4
Atru.chr2.1318 Acer truncatum HOM05D003172 ORTHO05D003708 2.0e-06 55.8 31 77.4
Atru.chr2.1341 Acer truncatum HOM05D003172 ORTHO05D003708 2.0e-06 55.8 31 77.4
Cpa.g.sc51.92 Carica papaya HOM05D003172 ORTHO05D003708 2.0e-06 55.8 31 77.4
ECA238G3293 Erigeron canadensis HOM05D003172 ORTHO05D003708 2.0e-06 55.8 25 92.0
Migut.N01517 Erythranthe guttata HOM05D003172 ORTHO05D003708 2.0e-06 55.8 31 77.4
Lsat_1_v5_gn_2_57861 Lactuca sativa HOM05D003172 ORTHO05D003708 2.0e-06 55.8 25 92.0
Nn7g35818 Nelumbo nucifera HOM05D003172 ORTHO05D003708 2.0e-06 55.8 25 92.0
Oeu062136.1 Olea europaea HOM05D003172 ORTHO05D003708 2.0e-06 55.8 31 77.4
Phvul.001G109300 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 2.0e-06 55.8 31 77.4
QL07p020343 Quercus lobata HOM05D003172 ORTHO05D003708 2.0e-06 55.8 31 77.4
Hund24843 Selenicereus undatus HOM05D003172 ORTHO05D003708 2.0e-06 55.8 31 77.4
unitig_26.g9324 Utricularia gibba HOM05D003172 ORTHO05D003708 2.0e-06 55.8 31 77.4
Actinidia22095 Actinidia chinensis HOM05D003172 ORTHO05D003708 2.6e-06 55.5 31 77.4
Actinidia30565 Actinidia chinensis HOM05D003172 ORTHO05D003708 2.6e-06 55.5 31 77.4
Sabra13G0053000 Salix brachista HOM05D003172 ORTHO05D003708 2.6e-06 55.5 31 77.4
TAR369G0048 Trochodendron aralioides HOM05D003172 ORTHO05D003708 2.6e-06 55.5 31 77.4
AagrBONN_evm.TU.Sc2ySwM_362.2336 Anthoceros agrestis HOM05D003172 ORTHO05D003708 3.4e-06 55.1 31 74.2
CDE04G2412 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 3.4e-06 55.1 31 74.2
CDE07G1719 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 3.4e-06 55.1 31 74.2
Oeu026879.1 Olea europaea HOM05D003172 ORTHO05D003708 3.4e-06 55.1 31 77.4
MSTRG.26061 Avicennia marina HOM05D003172 ORTHO05D003708 4.4e-06 54.7 31 74.2
DCAR_013693 Daucus carota HOM05D003172 ORTHO05D003708 4.4e-06 54.7 31 74.2
DCAR_016860 Daucus carota HOM05D003172 ORTHO05D003708 4.4e-06 54.7 31 74.2
HanXRQChr07g0193171 Helianthus annuus HOM05D003172 ORTHO05D003708 4.4e-06 54.7 31 74.2
Pp3c24_19770 Physcomitrium patens HOM05D003172 ORTHO05D003708 4.4e-06 54.7 25 88.0
Pp3c8_22460 Physcomitrium patens HOM05D003172 ORTHO05D003708 4.4e-06 54.7 25 88.0
PGR142G1025 Punica granatum HOM05D003172 ORTHO05D003708 4.4e-06 54.7 31 74.2
Sc19g0006520 Simmondsia chinensis HOM05D003172 ORTHO05D003708 4.4e-06 54.7 31 74.2
THA.LOC104802864 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 4.4e-06 54.7 31 74.2
THA.LOC104820736 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 4.4e-06 54.7 31 74.2
ATR0697G199 Amborella trichopoda HOM05D003172 ORTHO05D003708 5.8e-06 54.3 31 71.0
AUR62032669 Chenopodium quinoa HOM05D003172 ORTHO05D003708 5.8e-06 54.3 31 77.4
AUR62035298 Chenopodium quinoa HOM05D003172 ORTHO05D003708 5.8e-06 54.3 31 77.4
Migut.K00002 Erythranthe guttata HOM05D003172 ORTHO05D003708 5.8e-06 54.3 31 74.2
Lj1g0020713 Lotus japonicus HOM05D003172 ORTHO05D003708 5.8e-06 54.3 31 74.2
Lj5g0018859 Lotus japonicus HOM05D003172 ORTHO05D003708 5.8e-06 54.3 31 74.2
ClCG10G013300 Citrullus lanatus HOM05D003172 ORTHO05D003708 7.6e-06 53.9 31 74.2
MELO3C026894.2 Cucumis melo HOM05D003172 ORTHO05D003708 7.6e-06 53.9 31 74.2
CsaV3_3G043330 Cucumis sativus L. HOM05D003172 ORTHO05D003708 7.6e-06 53.9 31 74.2
Mapoly0027s0010 Marchantia polymorpha HOM05D003172 ORTHO05D003708 7.6e-06 53.9 25 84.0
Sed0012949 Sechium edule HOM05D003172 ORTHO05D003708 7.6e-06 53.9 31 74.2
Sed0019950 Sechium edule HOM05D003172 ORTHO05D003708 7.6e-06 53.9 31 74.2
Aa31LG11G11360 Aethionema arabicum HOM05D003172 ORTHO05D003708 9.9e-06 53.5 31 74.2
ECA233G5856 Erigeron canadensis HOM05D003172 ORTHO05D003708 9.9e-06 53.5 25 84.0
Os03g0652100 Oryza sativa ssp. japonica HOM05D003172 ORTHO05D003708 9.9e-06 53.5 31 71.0
HPP92_013954 Vanilla planifolia HOM05D003172 ORTHO05D003708 9.9e-06 53.5 31 71.0
Zm00001eb218410 Zea mays HOM05D003172 ORTHO05D003708 9.9e-06 53.5 31 71.0


User provided reference genes

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