Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0051891 Rosa chinensis HOM05D003769 ORTHO05D004521 7.4e-77 290.4 143 100.0
RcHm_v2.0_Chr3g0491251 Rosa chinensis HOM05D003769 ORTHO05D004521 3.8e-73 278.1 143 95.8
RcHm_v2.0_Chr7g0185021 Rosa chinensis HOM05D003769 ORTHO05D004521 2.0e-66 255.8 133 95.5
FvH4_5g12450 Fragaria vesca HOM05D003769 ORTHO05D004521 1.4e-62 243.0 133 91.7
FAN18G2189 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.4e-62 243.0 133 91.7
FAN04G2437 Fragaria x ananassa HOM05D003769 ORTHO05D004521 2.3e-62 242.3 134 90.3
FAN08G0427 Fragaria x ananassa HOM05D003769 ORTHO05D004521 3.9e-62 241.5 133 91.0
FAN18G2555 Fragaria x ananassa HOM05D003769 ORTHO05D004521 5.3e-59 231.1 153 79.7
Prupe.5G219600 Prunus persica HOM05D003769 ORTHO05D004521 1.6e-58 229.6 133 84.2
MD14G1224200 Malus domestica HOM05D003769 ORTHO05D004521 5.5e-56 221.1 133 80.5
CANSAT80G0780 Cannabis sativa HOM05D003769 ORTHO05D004521 1.8e-54 216.1 134 79.1
QL10p023927 Quercus lobata HOM05D003769 ORTHO05D004521 1.8e-54 216.1 133 79.7
QL04p048687 Quercus lobata HOM05D003769 ORTHO05D004521 2.3e-54 215.7 134 78.4
Glyma.08G040500 Glycine max HOM05D003769 ORTHO05D004521 1.5e-53 213.0 131 77.9
Gohir.A09G177800 Gossypium hirsutum HOM05D003769 ORTHO05D004521 2.6e-53 212.2 130 79.2
Haze_18649 Corylus avellana HOM05D003769 ORTHO05D004521 3.3e-53 211.8 133 78.2
Haze_18651 Corylus avellana HOM05D003769 ORTHO05D004521 5.7e-53 211.1 133 78.2
Hma1.2p1_1001F.1_g246600 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 9.7e-53 210.3 133 75.2
Hma1.2p1_1001F.1_g246610 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 9.7e-53 210.3 133 75.2
Ca_25453_v3 Cicer arietinum L. HOM05D003769 ORTHO05D004521 1.3e-52 209.9 134 75.4
Cfa019795 Carpinus fangiana HOM05D003769 ORTHO05D004521 1.7e-52 209.5 134 77.6
Dinv07347 Davidia involucrata HOM05D003769 ORTHO05D004521 2.2e-52 209.1 132 75.0
Duzib084G0296 Durio zibethinus HOM05D003769 ORTHO05D004521 2.2e-52 209.1 130 78.5
Gohir.D09G173300 Gossypium hirsutum HOM05D003769 ORTHO05D004521 2.2e-52 209.1 130 77.7
Gorai.006G195200 Gossypium raimondii HOM05D003769 ORTHO05D004521 2.2e-52 209.1 130 77.7
Phvul.002G315300 Phaseolus vulgaris HOM05D003769 ORTHO05D004521 4.8e-52 208.0 135 74.8
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 1.4e-51 206.5 130 75.4
Glyma.05G233100 Glycine max HOM05D003769 ORTHO05D004521 1.8e-51 206.1 131 74.8
Psat7g009720 Pisum sativum HOM05D003769 ORTHO05D004521 2.4e-51 205.7 133 74.4
Medtr8g104010 Medicago truncatula HOM05D003769 ORTHO05D004521 3.1e-51 205.3 131 75.6
Thecc.03G031600 Theobroma cacao HOM05D003769 ORTHO05D004521 3.1e-51 205.3 130 79.2
CiPaw.16G085300 Carya illinoinensis HOM05D003769 ORTHO05D004521 1.2e-50 203.4 135 75.6
TPR.G32677 Trifolium pratense HOM05D003769 ORTHO05D004521 1.2e-50 203.4 134 73.1
Dinv40419 Davidia involucrata HOM05D003769 ORTHO05D004521 1.6e-50 203.0 132 72.7
CiPaw.15G128600 Carya illinoinensis HOM05D003769 ORTHO05D004521 2.0e-50 202.6 133 74.4
CSS0000649 Camellia sinensis var. sinensis HOM05D003769 ORTHO05D004521 2.7e-50 202.2 132 75.8
GSVIVG01008260001 Vitis vinifera HOM05D003769 ORTHO05D004521 3.5e-50 201.8 133 72.9
Lj4g0007480 Lotus japonicus HOM05D003769 ORTHO05D004521 7.7e-50 200.7 134 73.1
Sopen03g038480 Solanum pennellii HOM05D003769 ORTHO05D004521 7.7e-50 200.7 130 72.3
Solyc03g119650.3 Solanum lycopersicum HOM05D003769 ORTHO05D004521 1.0e-49 200.3 130 72.3
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 1.3e-49 199.9 134 72.4
Actinidia31020 Actinidia chinensis HOM05D003769 ORTHO05D004521 2.2e-49 199.1 132 74.2
MD06G1213100 Malus domestica HOM05D003769 ORTHO05D004521 2.2e-49 199.1 132 75.8
Nitab4.5_0004412g0040 Nicotiana tabacum HOM05D003769 ORTHO05D004521 2.9e-49 198.7 130 74.6
Aqoxy3G00338 Aquilegia oxysepala HOM05D003769 ORTHO05D004521 3.8e-49 198.4 137 72.3
Sc10g0009500 Simmondsia chinensis HOM05D003769 ORTHO05D004521 5.0e-49 198.0 133 73.7
TAR629G2778 Trochodendron aralioides HOM05D003769 ORTHO05D004521 5.0e-49 198.0 137 73.0
PGR083G2820 Punica granatum HOM05D003769 ORTHO05D004521 6.5e-49 197.6 133 73.7
Lalb_Chr05g0222571 Lupinus albus HOM05D003769 ORTHO05D004521 8.5e-49 197.2 134 70.9
Manes.01G013600 Manihot esculenta HOM05D003769 ORTHO05D004521 8.5e-49 197.2 133 73.7
ATR0322G035 Amborella trichopoda HOM05D003769 ORTHO05D004521 1.1e-48 196.8 138 71.0
Eucgr.B00711 Eucalyptus grandis HOM05D003769 ORTHO05D004521 1.1e-48 196.8 133 73.7
PSO017G1990 Papaver somniferum HOM05D003769 ORTHO05D004521 1.5e-48 196.4 137 76.6
PSO478G4026 Papaver somniferum HOM05D003769 ORTHO05D004521 1.5e-48 196.4 137 76.6
vmacro04397 Vaccinium macrocarpon HOM05D003769 ORTHO05D004521 4.2e-48 194.9 132 75.0
Nitab4.5_0001599g0030 Nicotiana tabacum HOM05D003769 ORTHO05D004521 5.5e-48 194.5 130 73.8
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 7.2e-48 194.1 133 73.7
VMungo0251G1242 Vigna mungo HOM05D003769 ORTHO05D004521 9.4e-48 193.7 136 69.9
CAN.G438.128 Capsicum annuum HOM05D003769 ORTHO05D004521 1.6e-47 193.0 130 73.1
arahy.Tifrunner.gnm1.ann1.9P0TZR Arachis hypogaea HOM05D003769 ORTHO05D004521 2.1e-47 192.6 133 72.9
arahy.Tifrunner.gnm1.ann1.A9KR6W Arachis hypogaea HOM05D003769 ORTHO05D004521 2.1e-47 192.6 133 72.9
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 2.1e-47 192.6 133 70.7
MBI04_g36311_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 4.7e-47 191.4 136 75.0
Duzib068G0584 Durio zibethinus HOM05D003769 ORTHO05D004521 8.0e-47 190.7 130 73.8
Cc04_g07270 Coffea canephora HOM05D003769 ORTHO05D004521 1.0e-46 190.3 132 75.0
SalBow1G2916 Salvia bowleyana HOM05D003769 ORTHO05D004521 1.4e-46 189.9 133 69.9
Potri.015G049500 Populus trichocarpa HOM05D003769 ORTHO05D004521 1.8e-46 189.5 133 73.7
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 3.0e-46 188.7 134 70.1
Potri.012G060800 Populus trichocarpa HOM05D003769 ORTHO05D004521 6.8e-46 187.6 134 70.9
SGA_v2.0_scaffold612G53192 Striga asiatica HOM05D003769 ORTHO05D004521 1.2e-45 186.8 130 72.3
COL.COLO4_16279 Corchorus olitorius HOM05D003769 ORTHO05D004521 3.4e-45 185.3 134 69.4
MELO3C002081.2 Cucumis melo HOM05D003769 ORTHO05D004521 1.7e-44 183.0 132 68.9
CsaV3_1G006540 Cucumis sativus L. HOM05D003769 ORTHO05D004521 3.7e-44 181.8 133 67.7
Sed0003499 Sechium edule HOM05D003769 ORTHO05D004521 8.3e-44 180.6 134 64.9
ClCG04G011210 Citrullus lanatus HOM05D003769 ORTHO05D004521 1.1e-43 180.3 133 66.9
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 1.1e-43 180.3 132 68.9
Sabra12G0044000 Salix brachista HOM05D003769 ORTHO05D004521 4.1e-43 178.3 134 70.1
Migut.D01465 Erythranthe guttata HOM05D003769 ORTHO05D004521 2.0e-42 176.0 133 67.7
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 4.5e-42 174.9 134 67.9
TWI81G0419 Tripterygium wilfordii HOM05D003769 ORTHO05D004521 4.5e-42 174.9 135 66.7
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 8.6e-41 170.6 133 69.2
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 1.5e-40 169.9 134 67.2
Hund10227 Selenicereus undatus HOM05D003769 ORTHO05D000105 1.5e-40 169.9 133 63.2
THA.LOC104820400 Tarenaya hassleriana HOM05D003769 ORTHO05D004521 1.5e-40 169.9 130 68.5
AUR62029853 Chenopodium quinoa HOM05D003769 ORTHO05D004521 1.9e-40 169.5 133 67.7
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 4.2e-40 168.3 134 66.4
Lj5C147T4 Lonicera japonica HOM05D003769 ORTHO05D004521 4.2e-40 168.3 132 66.7
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 7.2e-40 167.5 136 66.2
HPP92_022912 Vanilla planifolia HOM05D003769 ORTHO05D004521 7.2e-40 167.5 133 63.9
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 9.5e-40 167.2 135 66.7
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 9.5e-40 167.2 135 66.7
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 9.5e-40 167.2 135 66.7
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 9.5e-40 167.2 135 66.7
BraA06t23606Z Brassica rapa HOM05D003769 ORTHO05D004521 9.5e-40 167.2 135 66.7
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 9.5e-40 167.2 135 66.7
AUR62025881 Chenopodium quinoa HOM05D003769 ORTHO05D004521 1.2e-39 166.8 133 66.9
BcaB04g17498 Brassica carinata HOM05D003769 ORTHO05D004521 2.8e-39 165.6 135 65.9
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 3.6e-39 165.2 136 66.2
CDE01G0336 Ceratophyllum demersum HOM05D003769 ORTHO05D004521 3.6e-39 165.2 137 62.0
AT1G49040 Arabidopsis thaliana HOM05D003769 ORTHO05D004521 4.7e-39 164.9 136 66.2
Thhalv10011186m.g Eutrema salsugineum HOM05D003769 ORTHO05D004521 1.4e-38 163.3 135 65.9
Ah.02g115340 Amaranthus hybridus HOM05D003769 ORTHO05D004521 2.6e-37 159.1 132 58.3
Lsat_1_v5_gn_8_146581 Lactuca sativa HOM05D003769 ORTHO05D004521 5.7e-37 157.9 142 63.4
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 7.5e-37 157.5 133 62.4
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 7.5e-37 157.5 134 63.4
BcaB07g33695 Brassica carinata HOM05D003769 ORTHO05D004521 2.2e-36 156.0 135 63.0
AUR62029854 Chenopodium quinoa HOM05D003769 ORTHO05D004521 3.7e-36 155.2 132 57.6
AUR62043128 Chenopodium quinoa HOM05D003769 ORTHO05D004521 3.7e-36 155.2 132 57.6
AUR62043749 Chenopodium quinoa HOM05D003769 ORTHO05D004521 3.7e-36 155.2 132 57.6
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 8.3e-36 154.1 132 57.6
HanXRQChr17g0558431 Helianthus annuus HOM05D003769 ORTHO05D004521 1.1e-35 153.7 135 63.0
ECA233G5984 Erigeron canadensis HOM05D003769 ORTHO05D004521 1.4e-35 153.3 133 61.7
AUR62025889 Chenopodium quinoa HOM05D003769 ORTHO05D004521 4.1e-35 151.8 132 56.8
C07p34210 Brassica napus HOM05D003769 ORTHO05D004521 7.0e-35 151.0 126 63.5
BolC7t43936H Brassica oleracea HOM05D003769 ORTHO05D004521 7.0e-35 151.0 126 63.5
Cpa.g.sc13.18 Carica papaya HOM05D003769 ORTHO05D004521 7.3e-32 141.0 73 86.3
SEGI_15664 Sequoiadendron giganteum HOM05D003769 ORTHO05D004521 2.1e-31 139.4 138 52.2
BolC7t43948H Brassica oleracea HOM05D003769 ORTHO05D004521 3.0e-30 135.6 126 58.7
RcHm_v2.0_Chr2g0150541 Rosa chinensis HOM05D003769 ORTHO05D004521 2.0e-26 122.9 97 71.1
unitig_8.g3057 Utricularia gibba HOM05D003769 ORTHO05D004521 1.7e-25 119.8 114 54.4
Mapoly0058s0028 Marchantia polymorpha HOM05D003769 ORTHO05D004521 5.2e-22 108.2 129 43.4
Pp3c26_9700 Physcomitrium patens HOM05D003769 ORTHO05D004521 4.4e-21 105.1 123 45.5
BcaC06g31146 Brassica carinata HOM05D003769 ORTHO05D004521 8.3e-20 100.9 61 77.0
SMO228G0026 Selaginella moellendorffii HOM05D003769 ORTHO05D004521 2.3e-17 92.8 122 43.4
AagrBONN_evm.TU.Sc2ySwM_368.2777 Anthoceros agrestis HOM05D003769 ORTHO05D004521 5.2e-14 81.6 134 40.3
Cpa.g.sc13.14 Carica papaya HOM05D003769 ORTHO05D004521 6.4e-12 74.7 57 66.7
CBR_g37922 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-06 57.4 119 29.4


User provided reference genes

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