Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0051881 Rosa chinensis HOM05D003769 ORTHO05D004521 1.4e-93 346.3 177 100.0
RcHm_v2.0_Chr7g0185021 Rosa chinensis HOM05D003769 ORTHO05D004521 5.4e-37 158.3 132 66.7
FvH4_5g12450 Fragaria vesca HOM05D003769 ORTHO05D004521 1.2e-36 157.1 132 65.9
FAN04G2437 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.2e-36 157.1 132 65.9
FAN08G0427 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.2e-36 157.1 132 65.9
FAN18G2189 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.2e-36 157.1 132 65.9
FAN18G2555 Fragaria x ananassa HOM05D003769 ORTHO05D004521 1.2e-36 157.1 132 65.9
Prupe.5G219600 Prunus persica HOM05D003769 ORTHO05D004521 5.4e-29 131.7 132 56.8
CANSAT80G0780 Cannabis sativa HOM05D003769 ORTHO05D004521 1.6e-28 130.2 132 56.1
CiPaw.16G085300 Carya illinoinensis HOM05D003769 ORTHO05D004521 1.6e-28 130.2 133 56.4
QL10p023951 Quercus lobata HOM05D003769 ORTHO05D004521 1.6e-28 130.2 82 78.0
Psat7g012720 Pisum sativum HOM05D003769 ORTHO05D004521 3.5e-28 129.0 136 52.9
Lalb_Chr05g0222571 Lupinus albus HOM05D003769 ORTHO05D004521 6.0e-28 128.3 132 54.5
Nitab4.5_0004412g0040 Nicotiana tabacum HOM05D003769 ORTHO05D004521 1.0e-27 127.5 126 57.1
Duzib084G0296 Durio zibethinus HOM05D003769 ORTHO05D004521 3.0e-27 125.9 133 55.6
Manes.01G013600 Manihot esculenta HOM05D003769 ORTHO05D004521 3.0e-27 125.9 132 56.1
Thecc.03G031600 Theobroma cacao HOM05D003769 ORTHO05D004521 3.0e-27 125.9 132 55.3
GSVIVG01008260001 Vitis vinifera HOM05D003769 ORTHO05D004521 3.0e-27 125.9 132 56.1
Actinidia31020 Actinidia chinensis HOM05D003769 ORTHO05D004521 5.1e-27 125.2 132 55.3
MD14G1224200 Malus domestica HOM05D003769 ORTHO05D004521 5.1e-27 125.2 132 54.5
Medtr8g104010 Medicago truncatula HOM05D003769 ORTHO05D004521 5.1e-27 125.2 132 53.0
Potri.012G060800 Populus trichocarpa HOM05D003769 ORTHO05D004521 5.1e-27 125.2 132 56.1
Cfa019795 Carpinus fangiana HOM05D003769 ORTHO05D004521 6.7e-27 124.8 132 54.5
MELO3C002081.2 Cucumis melo HOM05D003769 ORTHO05D004521 6.7e-27 124.8 76 81.6
CsaV3_1G006540 Cucumis sativus L. HOM05D003769 ORTHO05D004521 6.7e-27 124.8 76 81.6
Haze_18651 Corylus avellana HOM05D003769 ORTHO05D004521 8.7e-27 124.4 125 56.8
ClCG04G011210 Citrullus lanatus HOM05D003769 ORTHO05D004521 1.1e-26 124.0 132 54.5
Lj4g0007480 Lotus japonicus HOM05D003769 ORTHO05D004521 1.1e-26 124.0 132 53.8
Ca_25453_v3 Cicer arietinum L. HOM05D003769 ORTHO05D004521 1.5e-26 123.6 132 53.8
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 1.5e-26 123.6 132 56.1
Glyma.08G040500 Glycine max HOM05D003769 ORTHO05D004521 1.9e-26 123.2 132 53.8
Potri.015G049500 Populus trichocarpa HOM05D003769 ORTHO05D004521 1.9e-26 123.2 132 54.5
Sed0003499 Sechium edule HOM05D003769 ORTHO05D004521 1.9e-26 123.2 76 80.3
Duzib068G0584 Durio zibethinus HOM05D003769 ORTHO05D004521 2.5e-26 122.9 132 55.3
vmacro04397 Vaccinium macrocarpon HOM05D003769 ORTHO05D004521 2.5e-26 122.9 137 52.6
CAN.G438.128 Capsicum annuum HOM05D003769 ORTHO05D004521 4.3e-26 122.1 143 51.0
CiPaw.15G128600 Carya illinoinensis HOM05D003769 ORTHO05D004521 4.3e-26 122.1 133 54.1
COL.COLO4_16279 Corchorus olitorius HOM05D003769 ORTHO05D004521 4.3e-26 122.1 132 53.8
Gohir.A09G177800 Gossypium hirsutum HOM05D003769 ORTHO05D004521 4.3e-26 122.1 132 53.8
Gohir.D09G173300 Gossypium hirsutum HOM05D003769 ORTHO05D004521 4.3e-26 122.1 132 53.8
Gorai.006G195200 Gossypium raimondii HOM05D003769 ORTHO05D004521 4.3e-26 122.1 132 53.8
TAR629G2778 Trochodendron aralioides HOM05D003769 ORTHO05D004521 4.3e-26 122.1 132 53.8
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 5.6e-26 121.7 132 53.8
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 7.4e-26 121.3 76 77.6
Hma1.2p1_1001F.1_g246600 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 9.6e-26 120.9 76 78.9
Hma1.2p1_1001F.1_g246610 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 9.6e-26 120.9 76 78.9
MD06G1213100 Malus domestica HOM05D003769 ORTHO05D004521 9.6e-26 120.9 132 53.8
PGR083G2820 Punica granatum HOM05D003769 ORTHO05D004521 9.6e-26 120.9 79 74.7
Aqoxy3G00338 Aquilegia oxysepala HOM05D003769 ORTHO05D004521 1.3e-25 120.6 132 52.3
Dinv40419 Davidia involucrata HOM05D003769 ORTHO05D004521 1.3e-25 120.6 132 53.0
Sc10g0009500 Simmondsia chinensis HOM05D003769 ORTHO05D004521 1.3e-25 120.6 132 53.0
TWI81G0419 Tripterygium wilfordii HOM05D003769 ORTHO05D004521 1.3e-25 120.6 132 53.0
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 1.6e-25 120.2 132 53.0
TPR.G32677 Trifolium pratense HOM05D003769 ORTHO05D004521 1.6e-25 120.2 132 50.8
arahy.Tifrunner.gnm1.ann1.9P0TZR Arachis hypogaea HOM05D003769 ORTHO05D004521 2.1e-25 119.8 132 52.3
arahy.Tifrunner.gnm1.ann1.A9KR6W Arachis hypogaea HOM05D003769 ORTHO05D004521 2.1e-25 119.8 132 52.3
CSS0000649 Camellia sinensis var. sinensis HOM05D003769 ORTHO05D004521 2.1e-25 119.8 132 53.0
Phvul.002G315300 Phaseolus vulgaris HOM05D003769 ORTHO05D004521 2.1e-25 119.8 132 52.3
VMungo0251G1242 Vigna mungo HOM05D003769 ORTHO05D004521 2.1e-25 119.8 132 52.3
Cpa.g.sc13.14 Carica papaya HOM05D003769 ORTHO05D004521 2.8e-25 119.4 132 52.3
Dinv07347 Davidia involucrata HOM05D003769 ORTHO05D004521 2.8e-25 119.4 132 53.0
Peaxi162Scf00015g00841 Petunia axillaris HOM05D003769 ORTHO05D004521 2.8e-25 119.4 125 53.6
Lsat_1_v5_gn_8_146581 Lactuca sativa HOM05D003769 ORTHO05D004521 6.2e-25 118.2 132 53.0
Solyc03g119650.3 Solanum lycopersicum HOM05D003769 ORTHO05D004521 6.2e-25 118.2 143 49.7
Sopen03g038480 Solanum pennellii HOM05D003769 ORTHO05D004521 6.2e-25 118.2 143 49.7
ATR0322G035 Amborella trichopoda HOM05D003769 ORTHO05D004521 1.4e-24 117.1 132 50.8
PSO017G1990 Papaver somniferum HOM05D003769 ORTHO05D004521 1.4e-24 117.1 76 72.4
PSO478G4026 Papaver somniferum HOM05D003769 ORTHO05D004521 1.4e-24 117.1 76 72.4
SGA_v2.0_scaffold612G53192 Striga asiatica HOM05D003769 ORTHO05D004521 1.8e-24 116.7 132 52.3
MBI04_g36311_MAGBIO Magnolia biondii HOM05D003769 ORTHO05D004521 3.1e-24 115.9 76 73.7
HanXRQChr17g0558431 Helianthus annuus HOM05D003769 ORTHO05D004521 4.0e-24 115.5 132 52.3
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 4.0e-24 115.5 132 49.2
ECA233G5984 Erigeron canadensis HOM05D003769 ORTHO05D004521 6.9e-24 114.8 132 51.5
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 1.5e-23 113.6 132 50.0
Migut.D01465 Erythranthe guttata HOM05D003769 ORTHO05D004521 1.5e-23 113.6 132 50.0
THA.LOC104820400 Tarenaya hassleriana HOM05D003769 ORTHO05D004521 1.5e-23 113.6 133 50.4
CARHR039080 Cardamine hirsuta HOM05D003769 ORTHO05D004521 2.6e-23 112.8 132 48.5
Eucgr.B00711 Eucalyptus grandis HOM05D003769 ORTHO05D004521 2.6e-23 112.8 132 48.5
Carub.0001s3822 Capsella rubella HOM05D003769 ORTHO05D004521 4.5e-23 112.1 132 48.5
HPP92_022912 Vanilla planifolia HOM05D003769 ORTHO05D004521 4.5e-23 112.1 76 71.1
AT1G49040 Arabidopsis thaliana HOM05D003769 ORTHO05D004521 1.0e-22 110.9 137 46.7
Cc04_g07270 Coffea canephora HOM05D003769 ORTHO05D004521 1.0e-22 110.9 132 47.7
AL1G55920 Arabidopsis lyrata HOM05D003769 ORTHO05D004521 1.3e-22 110.5 132 47.7
Thhalv10011186m.g Eutrema salsugineum HOM05D003769 ORTHO05D004521 1.3e-22 110.5 132 50.0
SalBow1G2916 Salvia bowleyana HOM05D003769 ORTHO05D004521 1.3e-22 110.5 132 48.5
Hund10227 Selenicereus undatus HOM05D003769 ORTHO05D000105 1.7e-22 110.2 87 63.2
BcaB04g17498 Brassica carinata HOM05D003769 ORTHO05D004521 2.9e-22 109.4 137 46.0
Sp1g35950 Schrenkiella parvula HOM05D003769 ORTHO05D004521 2.9e-22 109.4 137 46.7
Aa31LG10G4900 Aethionema arabicum HOM05D003769 ORTHO05D004521 3.8e-22 109.0 132 47.0
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 3.8e-22 109.0 132 47.7
BcaC08g43116 Brassica carinata HOM05D003769 ORTHO05D004521 6.5e-22 108.2 80 65.0
A06p03980 Brassica napus HOM05D003769 ORTHO05D004521 6.5e-22 108.2 80 65.0
C06p03880 Brassica napus HOM05D003769 ORTHO05D004521 6.5e-22 108.2 80 65.0
BolC6t35520H Brassica oleracea HOM05D003769 ORTHO05D004521 6.5e-22 108.2 80 65.0
BraA06t23606Z Brassica rapa HOM05D003769 ORTHO05D004521 1.4e-21 107.1 80 63.8
unitig_8.g3058 Utricularia gibba HOM05D003769 ORTHO05D004521 3.2e-21 105.9 132 45.5
MSTRG.9273 Avicennia marina HOM05D003769 ORTHO05D004521 5.5e-21 105.1 132 48.5
CDE01G0336 Ceratophyllum demersum HOM05D003769 ORTHO05D004521 5.5e-21 105.1 132 44.7
BcaB07g33695 Brassica carinata HOM05D003769 ORTHO05D004521 1.2e-20 104.0 68 72.1
BcaC06g31146 Brassica carinata HOM05D003769 ORTHO05D004521 1.2e-20 104.0 125 48.8
C07p34210 Brassica napus HOM05D003769 ORTHO05D004521 1.2e-20 104.0 125 48.8
SEGI_15664 Sequoiadendron giganteum HOM05D003769 ORTHO05D004521 2.7e-20 102.8 132 42.4
BolC7t43948H Brassica oleracea HOM05D003769 ORTHO05D004521 1.3e-19 100.5 125 48.0
BolC7t43936H Brassica oleracea HOM05D003769 ORTHO05D004521 3.0e-19 99.4 125 48.0
Ah.02g115340 Amaranthus hybridus HOM05D003769 ORTHO05D004521 1.1e-18 97.4 81 56.8
AUR62029854 Chenopodium quinoa HOM05D003769 ORTHO05D004521 1.5e-18 97.1 88 56.8
AUR62043128 Chenopodium quinoa HOM05D003769 ORTHO05D004521 1.5e-18 97.1 88 56.8
AUR62025889 Chenopodium quinoa HOM05D003769 ORTHO05D004521 3.3e-18 95.9 81 58.0
AUR62043749 Chenopodium quinoa HOM05D003769 ORTHO05D004521 3.3e-18 95.9 81 58.0
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 5.7e-18 95.1 88 53.4
Nitab4.5_0001599g0030 Nicotiana tabacum HOM05D003769 ORTHO05D004521 1.3e-17 94.0 126 48.4
SMO228G0026 Selaginella moellendorffii HOM05D003769 ORTHO05D004521 2.1e-17 93.2 81 50.6
AUR62025881 Chenopodium quinoa HOM05D003769 ORTHO05D004521 1.8e-16 90.1 60 75.0
AUR62029853 Chenopodium quinoa HOM05D003769 ORTHO05D004521 4.1e-16 89.0 60 73.3
Ah.11g044930 Amaranthus hybridus HOM05D003769 ORTHO05D004521 6.9e-16 88.2 60 75.0
AagrBONN_evm.TU.Sc2ySwM_368.2777 Anthoceros agrestis HOM05D003769 ORTHO05D004521 2.0e-15 86.7 81 44.4
Mapoly0058s0028 Marchantia polymorpha HOM05D003769 ORTHO05D004521 2.0e-15 86.7 132 36.4
Pp3c26_9700 Physcomitrium patens HOM05D003769 ORTHO05D004521 4.5e-15 85.5 75 50.7
Lj5C147T4 Lonicera japonica HOM05D003769 ORTHO05D004521 3.7e-09 65.9 146 35.6


User provided reference genes

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