Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0050041 Rosa chinensis HOM05D004870 ORTHO05D347201 6.8e-57 223.8 115 100.0
RcHm_v2.0_Chr5g0010781 Rosa chinensis HOM05D004870 ORTHO05D006061 5.9e-16 87.8 50 92.0
FAN16G1105 Fragaria x ananassa HOM05D004870 ORTHO05D006061 7.9e-13 77.4 50 78.0
FAN25G2081 Fragaria x ananassa HOM05D004870 ORTHO05D006061 7.9e-13 77.4 50 78.0
FAN21G1781 Fragaria x ananassa HOM05D004870 ORTHO05D006061 1.8e-12 76.3 50 78.0
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 3.9e-12 75.1 50 76.0
FvH4_3g07800 Fragaria vesca HOM05D004870 ORTHO05D006061 6.7e-12 74.3 50 76.0
FAN11G2678 Fragaria x ananassa HOM05D004870 ORTHO05D006061 6.7e-12 74.3 50 76.0
arahy.Tifrunner.gnm1.ann1.GVRL8L Arachis hypogaea HOM05D004870 ORTHO05D006061 1.1e-11 73.6 50 72.0
arahy.Tifrunner.gnm1.ann1.NQ58Z6 Arachis hypogaea HOM05D004870 ORTHO05D006061 1.1e-11 73.6 50 72.0
Cfa008769 Carpinus fangiana HOM05D004870 ORTHO05D006061 2.0e-11 72.8 50 72.0
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 2.0e-11 72.8 50 76.0
Nitab4.5_0006274g0020 Nicotiana tabacum HOM05D004870 ORTHO05D006061 2.5e-11 72.4 46 73.9
Atru.chr11.1102 Acer truncatum HOM05D004870 ORTHO05D006061 3.3e-11 72.0 50 70.0
Atru.chr11.1106 Acer truncatum HOM05D004870 ORTHO05D006061 3.3e-11 72.0 50 70.0
MD10G1280100 Malus domestica HOM05D004870 ORTHO05D006061 3.3e-11 72.0 50 74.0
Sc06g0006850 Simmondsia chinensis HOM05D004870 ORTHO05D006061 3.3e-11 72.0 46 76.1
Prupe.6G003700 Prunus persica HOM05D004870 ORTHO05D006061 4.3e-11 71.6 50 72.0
vmacro15993 Vaccinium macrocarpon HOM05D004870 ORTHO05D006061 4.3e-11 71.6 49 69.4
Nitab4.5_0000069g0140 Nicotiana tabacum HOM05D004870 ORTHO05D006061 5.7e-11 71.2 46 71.7
Ah.08g211980 Amaranthus hybridus HOM05D004870 ORTHO05D006061 7.4e-11 70.9 46 71.7
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 7.4e-11 70.9 46 71.7
CiPaw.05G171200 Carya illinoinensis HOM05D004870 ORTHO05D006061 7.4e-11 70.9 50 70.0
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 7.4e-11 70.9 47 74.5
Lj3A847T44 Lonicera japonica HOM05D004870 ORTHO05D006061 7.4e-11 70.9 50 70.0
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 7.4e-11 70.9 50 70.0
QL06p048547 Quercus lobata HOM05D004870 ORTHO05D006061 7.4e-11 70.9 46 73.9
Lalb_Chr02g0143631 Lupinus albus HOM05D004870 ORTHO05D006061 9.7e-11 70.5 50 70.0
ECA234G2132 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.3e-10 70.1 50 68.0
Solyc01g008290.3 Solanum lycopersicum HOM05D004870 ORTHO05D006061 1.3e-10 70.1 46 71.7
Sopen01g003810 Solanum pennellii HOM05D004870 ORTHO05D006061 1.3e-10 70.1 46 71.7
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 1.3e-10 70.1 50 66.0
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 1.3e-10 70.1 75 53.3
AT5G23300 Arabidopsis thaliana HOM05D004870 ORTHO05D006061 1.7e-10 69.7 50 70.0
CDE05G3274 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 1.7e-10 69.7 50 70.0
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 1.7e-10 69.7 50 66.0
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 1.7e-10 69.7 50 66.0
Gohir.A03G166000 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.7e-10 69.7 50 66.0
Gohir.D02G189300 Gossypium hirsutum HOM05D004870 ORTHO05D006061 1.7e-10 69.7 50 66.0
Gorai.005G212000 Gossypium raimondii HOM05D004870 ORTHO05D006061 1.7e-10 69.7 50 66.0
MBI03_g13828_MAGBIO Magnolia biondii HOM05D004870 ORTHO05D006061 1.7e-10 69.7 50 66.0
SGA_v2.0_scaffold428G51528 Striga asiatica HOM05D004870 ORTHO05D006061 2.2e-10 69.3 46 67.4
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 2.2e-10 69.3 50 66.0
Lsat_1_v5_gn_1_81640 Lactuca sativa HOM05D004870 ORTHO05D006061 2.8e-10 68.9 50 66.0
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 2.8e-10 68.9 50 66.0
Nn3g18601 Nelumbo nucifera HOM05D004870 ORTHO05D006061 2.8e-10 68.9 50 68.0
Oeu063362.5 Olea europaea HOM05D004870 ORTHO05D006061 2.8e-10 68.9 46 69.6
PGSC0003DMG401016396 Solanum tuberosum HOM05D004870 ORTHO05D006061 2.8e-10 68.9 46 71.7
Thecc.02G155600 Theobroma cacao HOM05D004870 ORTHO05D006061 2.8e-10 68.9 50 64.0
HPP92_014771 Vanilla planifolia HOM05D004870 ORTHO05D006061 2.8e-10 68.9 50 66.0
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 2.8e-10 68.9 50 64.0
AL6G34560 Arabidopsis lyrata HOM05D004870 ORTHO05D006061 3.7e-10 68.6 50 70.0
BcaB04g19879 Brassica carinata HOM05D004870 ORTHO05D006061 3.7e-10 68.6 50 68.0
A09p07010 Brassica napus HOM05D004870 ORTHO05D006061 3.7e-10 68.6 50 68.0
C09p07820 Brassica napus HOM05D004870 ORTHO05D006061 3.7e-10 68.6 50 68.0
BolC9t53698H Brassica oleracea HOM05D004870 ORTHO05D006061 3.7e-10 68.6 50 68.0
BraA09t36349Z Brassica rapa HOM05D004870 ORTHO05D006061 3.7e-10 68.6 50 68.0
AUR62002708 Chenopodium quinoa HOM05D004870 ORTHO05D006061 3.7e-10 68.6 46 69.6
AUR62030167 Chenopodium quinoa HOM05D004870 ORTHO05D006061 3.7e-10 68.6 46 69.6
COL.COLO4_33098 Corchorus olitorius HOM05D004870 ORTHO05D006061 3.7e-10 68.6 50 64.0
MELO3C005067.2 Cucumis melo HOM05D004870 ORTHO05D006061 3.7e-10 68.6 50 68.0
Eucgr.I02621 Eucalyptus grandis HOM05D004870 ORTHO05D006061 3.7e-10 68.6 50 64.0
Sed0016006 Sechium edule HOM05D004870 ORTHO05D006061 3.7e-10 68.6 50 66.0
ATR0618G304 Amborella trichopoda HOM05D004870 ORTHO05D006061 4.8e-10 68.2 75 54.7
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 4.8e-10 68.2 50 68.0
CARHR190240 Cardamine hirsuta HOM05D004870 ORTHO05D006061 4.8e-10 68.2 50 68.0
ClCG01G008090 Citrullus lanatus HOM05D004870 ORTHO05D006061 4.8e-10 68.2 50 66.0
Haze_11781 Corylus avellana HOM05D004870 ORTHO05D006061 4.8e-10 68.2 50 68.0
CsaV3_1G039280 Cucumis sativus L. HOM05D004870 ORTHO05D006061 4.8e-10 68.2 50 66.0
PGR142G2596 Punica granatum HOM05D004870 ORTHO05D006061 4.8e-10 68.2 50 64.0
SGA_v2.0_scaffold91G28011 Striga asiatica HOM05D004870 ORTHO05D006061 4.8e-10 68.2 46 69.6
TAR629G3247 Trochodendron aralioides HOM05D004870 ORTHO05D006061 4.8e-10 68.2 50 68.0
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 68.0
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 68.0
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 68.0
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 68.0
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 68.0
Cc11_g00600 Coffea canephora HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 64.0
Duzib132G1043 Durio zibethinus HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 64.0
Migut.N00083 Erythranthe guttata HOM05D004870 ORTHO05D006061 6.3e-10 67.8 46 69.6
Lsat_1_v5_gn_1_81660 Lactuca sativa HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 66.0
PSO063G7087 Papaver somniferum HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 64.0
PSO339G5988 Papaver somniferum HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 64.0
PSO782G4799 Papaver somniferum HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 64.0
QL03p045749 Quercus lobata HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 68.0
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 6.3e-10 67.8 50 68.0
DCAR_026881 Daucus carota HOM05D004870 ORTHO05D006061 8.2e-10 67.4 50 64.0
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 8.2e-10 67.4 50 68.0
HanXRQChr01g0018971 Helianthus annuus HOM05D004870 ORTHO05D006061 8.2e-10 67.4 50 66.0
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 8.2e-10 67.4 50 64.0
Psat6g233800 Pisum sativum HOM05D004870 ORTHO05D006061 8.2e-10 67.4 50 64.0
CsaV3_5G020740 Cucumis sativus L. HOM05D004870 ORTHO05D006061 1.1e-09 67.0 50 66.0
TWI53G0925 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 1.1e-09 67.0 50 66.0
EL10Ac7g17331 Beta vulgaris HOM05D004870 ORTHO05D006061 1.4e-09 66.6 46 65.2
CAN.G282.44 Capsicum annuum HOM05D004870 ORTHO05D006061 1.4e-09 66.6 46 67.4
Ciclev10031476m.g Citrus clementina HOM05D004870 ORTHO05D006061 1.8e-09 66.2 50 66.0
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 1.8e-09 66.2 50 62.0
Peaxi162Scf00021g02316 Petunia axillaris HOM05D004870 ORTHO05D006061 1.8e-09 66.2 46 67.4
Aa31LG11G2760 Aethionema arabicum HOM05D004870 ORTHO05D006061 2.4e-09 65.9 50 66.0
Potri.005G089700 Populus trichocarpa HOM05D004870 ORTHO05D006061 2.4e-09 65.9 50 62.0
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 5.3e-09 64.7 50 62.0
Dinv17644 Davidia involucrata HOM05D004870 ORTHO05D006061 5.3e-09 64.7 50 62.0
Dinv25387 Davidia involucrata HOM05D004870 ORTHO05D006061 5.3e-09 64.7 50 62.0
Os04g0676300 Oryza sativa ssp. japonica HOM05D004870 ORTHO05D006061 5.3e-09 64.7 50 62.0
SalBow5G5328 Salvia bowleyana HOM05D004870 ORTHO05D006061 5.3e-09 64.7 46 67.4
TWI74G1525 Tripterygium wilfordii HOM05D004870 ORTHO05D006061 5.3e-09 64.7 50 64.0
unitig_749.g13388 Utricularia gibba HOM05D004870 ORTHO05D006061 5.3e-09 64.7 46 63.0
DCAR_002602 Daucus carota HOM05D004870 ORTHO05D006061 6.9e-09 64.3 50 62.0
Zm00001eb433680 Zea mays HOM05D004870 ORTHO05D006061 6.9e-09 64.3 50 62.0
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.2e-08 63.5 50 64.0
ECA248G2791 Erigeron canadensis HOM05D004870 ORTHO05D006061 1.2e-08 63.5 51 60.8
HanXRQChr01g0018951 Helianthus annuus HOM05D004870 ORTHO05D006061 1.5e-08 63.2 51 60.8
Potri.007G074101 Populus trichocarpa HOM05D004870 ORTHO05D006061 1.5e-08 63.2 46 65.2
Sabra05G0073800 Salix brachista HOM05D004870 ORTHO05D006061 1.5e-08 63.2 47 63.8
Actinidia04336 Actinidia chinensis HOM05D004870 ORTHO05D006061 2.0e-08 62.8 46 65.2
Hund08594 Selenicereus undatus HOM05D004870 ORTHO05D006061 2.6e-08 62.4 46 60.9
SEGI_39125 Sequoiadendron giganteum HOM05D004870 ORTHO05D006061 2.2e-07 59.3 46 67.4
Rhsim09G0069200 Rhododendron simsii HOM05D004870 ORTHO05D006061 5.5e-06 54.7 41 65.9
Cre03.g199423 Chlamydomonas reinhardtii HOM05D004870 ORTHO05D006061 7.2e-06 54.3 45 62.2
SHI28437 Sapria himalayana HOM05D004870 ORTHO05D006061 7.2e-06 54.3 50 54.0


User provided reference genes

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