Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 0.0e+00 1300.8 666 100.0
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 0.0e+00 1112.4 662 87.3
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 0.0e+00 1110.9 662 86.9
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 0.0e+00 1095.9 656 86.9
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 1.3e-301 1039.3 661 80.8
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 2.6e-281 971.8 656 76.1
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 3.4e-281 971.5 666 75.4
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 9.8e-281 969.9 658 75.8
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 9.8e-281 969.9 665 75.0
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 2.8e-280 968.4 660 75.6
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.6e-278 962.6 664 74.5
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 5.6e-276 954.1 659 75.4
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 7.3e-276 953.7 658 74.9
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 1.4e-274 949.5 658 73.9
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 8.9e-274 946.8 659 74.5
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 1.5e-273 946.0 664 72.9
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 1.5e-273 946.0 590 82.2
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 2.2e-272 942.2 658 73.7
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 3.7e-272 941.4 658 74.2
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 1.1e-271 939.9 664 71.8
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.2e-270 936.4 663 72.9
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 2.0e-270 935.6 660 73.2
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 1.0e-269 933.3 665 72.9
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 3.9e-269 931.4 664 71.4
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 8.6e-269 930.2 660 72.6
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.5e-268 928.7 646 73.8
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 5.6e-268 927.5 661 72.3
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 9.5e-268 926.8 658 72.0
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.2e-267 926.4 665 72.2
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 4.7e-267 924.5 670 71.0
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 8.0e-267 923.7 666 71.0
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 3.1e-266 921.8 665 70.7
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 4.4e-265 917.9 656 71.5
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.7e-264 916.0 666 70.3
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 4.9e-264 914.4 660 72.6
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 1.1e-263 913.3 668 69.9
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 1.1e-263 913.3 666 69.7
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 2.7e-262 908.7 658 70.5
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 6.0e-262 907.5 664 70.2
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 7.8e-262 907.1 656 71.2
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 8.6e-261 903.7 658 71.1
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 1.1e-260 903.3 658 70.5
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.5e-260 902.9 656 70.3
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 3.3e-260 901.7 661 72.0
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 3.3e-260 901.7 654 69.6
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 9.5e-260 900.2 694 67.6
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.6e-259 899.4 658 71.0
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 1.8e-258 896.0 669 69.2
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 1.8e-258 896.0 653 70.9
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 1.2e-257 893.3 656 69.5
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 3.4e-257 891.7 512 89.3
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 5.8e-257 891.0 664 69.3
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 9.8e-257 890.2 658 69.5
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 4.9e-256 887.9 660 70.2
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 6.4e-256 887.5 658 71.1
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 1.9e-255 885.9 658 69.1
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 2.4e-255 885.6 663 70.1
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 9.2e-255 883.6 656 68.4
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 1.2e-254 883.2 658 68.8
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.6e-254 882.9 659 69.3
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.3e-253 879.0 645 70.4
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 5.1e-253 877.9 666 68.2
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 1.5e-252 876.3 663 68.8
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 4.7e-251 871.3 659 68.4
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 6.2e-251 870.9 593 75.2
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 1.8e-250 869.4 654 68.3
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 8.9e-250 867.1 697 66.4
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 8.9e-250 867.1 697 66.1
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 9.9e-249 863.6 659 68.6
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 2.9e-248 862.1 658 68.7
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.4e-247 859.8 664 68.1
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 3.9e-245 851.7 619 70.9
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.5e-244 849.0 692 66.0
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 2.1e-243 845.9 669 65.8
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 3.4e-241 838.6 728 64.0
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 1.4e-239 833.2 613 71.0
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 7.1e-239 830.9 662 64.5
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 4.6e-238 828.2 605 69.6
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 1.6e-235 819.7 661 65.2
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 2.1e-235 819.3 644 66.8
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 2.8e-235 818.9 667 66.9
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 3.4e-233 812.0 645 66.4
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 4.9e-232 808.1 665 65.9
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 5.5e-223 778.1 593 69.3
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 5.6e-220 768.1 869 52.4
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 1.9e-215 753.1 691 58.3
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 2.5e-212 742.7 656 61.1
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 7.4e-212 741.1 666 60.2
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 8.5e-208 727.6 684 58.8
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 3.3e-204 715.7 849 50.8
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 5.9e-201 704.9 663 56.7
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.4e-186 657.1 483 69.8
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 2.9e-184 649.4 665 53.8
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.6e-180 636.3 580 59.1
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 1.2e-174 617.5 476 67.2
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 4.4e-172 609.0 494 66.0
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 6.5e-168 595.1 567 56.6
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 3.2e-154 549.7 610 52.0
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.0e-144 516.5 436 61.5
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 1.1e-130 471.5 429 57.8
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.0e-112 411.8 466 49.6
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 6.4e-107 392.5 345 58.8
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 8.8e-80 302.4 237 62.0
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.4e-77 295.0 206 76.2
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.5e-76 291.6 411 41.8
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 1.7e-75 288.1 442 41.2
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 2.9e-75 287.3 202 74.3
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.1e-66 258.8 182 73.1
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 5.9e-60 236.5 169 70.4
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 2.9e-59 234.2 392 38.3
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 5.5e-58 229.9 287 48.8
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.6e-55 221.1 249 53.0
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 2.3e-48 198.0 138 73.9
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 1.1e-42 179.1 177 56.5
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 6.8e-40 169.9 427 31.9
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 2.2e-38 164.9 101 80.2
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 3.2e-37 161.0 147 56.5
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.2e-33 149.1 93 77.4
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 2.1e-33 148.3 145 53.1
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 6.8e-32 143.3 94 75.5
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 9.8e-31 139.4 79 84.8
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 1.3e-30 139.0 88 76.1
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 1.1e-29 136.0 82 79.3
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.1e-29 136.0 124 58.9
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 7.8e-28 129.8 103 64.1
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 1.3e-27 129.0 174 42.5
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 1.1e-24 119.4 83 73.5
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 1.7e-22 112.1 239 36.0
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 2.4e-21 108.2 148 50.0
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 5.4e-21 107.1 78 66.7
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 6.0e-20 103.6 84 60.7
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 2.3e-19 101.7 65 75.4
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 3.9e-19 100.9 90 62.2
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 8.6e-19 99.8 81 69.1
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.1e-18 99.4 176 36.4
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 5.8e-15 87.0 67 64.2
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 1.2e-12 79.3 61 67.2
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 2.1e-12 78.6 51 68.6
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 4.6e-12 77.4 50 70.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 4.6e-12 77.4 50 70.0
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 7.8e-12 76.6 92 50.0
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 1.5e-10 72.4 50 64.0
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 6.9e-08 63.5 63 46.0
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 2.2e-06 58.5 49 61.2
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 2.9e-06 58.2 75 49.3


User provided reference genes

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