Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 0.0e+00 1401.7 932 100.0
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 0.0e+00 1186.0 932 81.4
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 0.0e+00 1151.0 944 81.9
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 0.0e+00 1150.6 942 84.7
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 0.0e+00 1147.9 952 82.5
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 2.4e-309 1065.4 888 79.7
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 4.1e-301 1038.1 771 86.5
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 9.5e-274 947.2 939 68.5
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 6.3e-209 731.9 952 55.6
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 2.6e-194 683.3 960 52.6
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 6.1e-188 662.1 945 57.0
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 1.0e-187 661.4 966 57.5
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 2.8e-185 653.3 953 51.8
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 6.3e-185 652.1 735 66.3
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.4e-176 624.4 715 53.7
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 4.1e-176 622.9 999 45.7
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 4.2e-173 612.8 949 57.4
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 1.2e-172 611.3 956 52.9
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 4.1e-168 596.3 961 51.5
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 9.2e-168 595.1 724 53.5
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 3.5e-167 593.2 949 50.2
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 2.3e-166 590.5 955 51.9
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 5.0e-166 589.3 957 52.1
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 2.5e-165 587.0 959 53.3
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 4.3e-165 586.3 726 50.1
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 2.3e-163 580.5 725 51.2
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 1.2e-162 578.2 968 47.9
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 1.5e-162 577.8 782 58.3
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 5.4e-160 569.3 946 51.7
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 1.2e-159 568.2 959 48.6
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 7.8e-159 565.5 788 59.1
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 1.0e-158 565.1 709 53.5
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 1.4e-155 554.7 830 50.8
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 3.1e-155 553.5 970 48.1
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 2.4e-152 543.9 764 56.0
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 3.0e-150 537.0 767 59.5
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 1.9e-149 534.3 801 46.8
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 4.1e-144 516.5 536 59.1
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 7.1e-144 515.8 855 50.8
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 1.2e-143 515.0 751 45.8
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.5e-141 508.1 530 58.1
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 9.5e-141 505.4 697 47.3
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 1.2e-140 505.0 755 45.8
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 2.1e-140 504.2 1016 49.5
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 4.7e-140 503.1 599 53.3
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 1.4e-139 501.5 560 55.5
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 5.2e-139 499.6 1022 48.4
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 8.4e-137 492.3 699 48.4
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 7.1e-136 489.2 758 45.0
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 9.2e-136 488.8 708 45.2
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 1.0e-134 485.3 960 46.5
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 1.0e-134 485.3 675 47.6
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 5.6e-133 479.6 1020 47.3
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 2.6e-130 470.7 745 43.0
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 3.2e-128 463.8 800 52.5
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 4.2e-128 463.4 955 43.5
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 1.0e-126 458.8 603 51.1
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.0e-126 458.8 774 43.7
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 3.9e-126 456.8 1012 45.2
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 3.3e-125 453.8 840 48.3
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 5.6e-125 453.0 708 44.4
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 1.1e-123 448.7 515 53.6
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 1.4e-123 448.4 586 47.6
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 6.9e-123 446.0 972 41.3
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 9.0e-123 445.7 509 54.4
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 5.1e-118 429.9 708 42.9
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 9.0e-115 419.1 855 49.5
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 1.2e-114 418.7 710 43.2
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 7.6e-114 416.0 717 41.1
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 9.9e-114 415.6 708 41.5
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 9.9e-114 415.6 601 46.3
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 3.8e-113 413.7 737 40.6
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 2.5e-112 411.0 706 42.2
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 1.6e-111 408.3 642 44.1
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 3.5e-111 407.1 997 43.4
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 8.7e-110 402.5 725 41.8
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 2.1e-108 397.9 692 41.6
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 2.4e-107 394.4 692 41.3
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 6.9e-107 392.9 692 41.2
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 8.4e-105 386.0 756 51.7
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 1.6e-103 381.7 637 50.5
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 3.5e-103 380.6 707 42.3
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 2.5e-101 374.4 520 49.8
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 4.1e-99 367.1 733 40.8
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 1.2e-98 365.5 746 38.7
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 1.5e-93 348.6 810 45.1
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 5.0e-89 333.6 763 37.6
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 3.2e-88 330.9 613 54.2
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 1.3e-84 318.9 558 42.3
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 2.2e-84 318.2 727 36.6
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 3.1e-83 314.3 771 36.1
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 3.2e-80 304.3 318 55.0
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 3.2e-80 304.3 613 41.8
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 6.7e-78 296.6 382 48.2
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 2.4e-75 288.1 777 34.9
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 1.0e-73 282.7 773 33.5
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 2.5e-64 251.5 654 47.7
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 5.5e-64 250.4 507 40.8
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 7.7e-58 229.9 954 33.4
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.5e-56 225.7 421 39.7
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 3.7e-52 211.1 793 30.6
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 2.0e-37 162.2 525 32.6
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 4.4e-29 134.4 152 53.9
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 1.2e-23 116.3 152 51.3
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 1.1e-22 113.2 154 42.2
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 1.8e-22 112.5 152 53.9
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 5.2e-22 110.9 152 46.1
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 2.4e-19 102.1 152 38.8
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 3.5e-18 98.2 159 37.1
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 4.6e-18 97.8 158 41.8
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 3.0e-17 95.1 154 46.8
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 4.3e-16 91.3 146 39.0
FvH4_2g00353 Fragaria vesca HOM05D006512 ORTHO05D008027 3.6e-15 88.2 51 80.4
Nn6g32350 Nelumbo nucifera HOM05D006512 ORTHO05D008027 3.5e-10 71.6 158 43.0
Cpa.g.c37452 Carica papaya HOM05D006512 ORTHO05D008027 6.0e-10 70.9 63 68.3
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-09 70.1 84 46.4
Actinidia02676 Actinidia chinensis HOM05D000736 ORTHO05D008027 7.3e-08 63.9 122 41.8
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 1.4e-06 59.7 71 39.4
AL1G48800 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 9.0e-06 57.0 70 41.4


User provided reference genes

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