Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0039841 Rosa chinensis HOM05D000001 ORTHO05D340698 4.9e-38 160.6 79 100.0
RcHm_v2.0_Chr4g0421041 Rosa chinensis HOM05D000001 ORTHO05D341799 7.3e-26 120.2 62 96.8
RcHm_v2.0_Chr6g0277991 Rosa chinensis HOM05D000001 ORTHO05D009739 1.4e-21 105.9 67 79.1
FvH4_2g15270 Fragaria vesca HOM05D000001 ORTHO05D009739 1.9e-21 105.5 67 79.1
FAN24G1158 Fragaria x ananassa HOM05D000001 ORTHO05D009739 1.9e-21 105.5 67 79.1
FAN27G1097 Fragaria x ananassa HOM05D000001 ORTHO05D009739 1.9e-21 105.5 67 79.1
FAN20G3197 Fragaria x ananassa HOM05D000001 ORTHO05D009739 5.4e-21 104.0 66 78.8
MD10G1008600 Malus domestica HOM05D000001 ORTHO05D009739 7.6e-15 83.6 67 65.7
Prupe.8G012400 Prunus persica HOM05D000001 ORTHO05D009739 1.7e-14 82.4 67 64.2
Cfa018216 Carpinus fangiana HOM05D000001 ORTHO05D009739 1.1e-13 79.7 67 62.7
Haze_17890 Corylus avellana HOM05D000001 ORTHO05D009739 1.1e-13 79.7 67 62.7
SalBow6G2498 Salvia bowleyana HOM05D000001 ORTHO05D009739 1.9e-13 79.0 67 59.7
Psat5g083600 Pisum sativum HOM05D000001 ORTHO05D009739 4.2e-13 77.8 67 58.2
TPR.G6304 Trifolium pratense HOM05D000001 ORTHO05D009739 7.1e-13 77.0 67 56.7
Glyma.04G243200 Glycine max HOM05D000001 ORTHO05D009739 1.2e-12 76.3 67 61.2
Glyma.06G120100 Glycine max HOM05D000001 ORTHO05D009739 1.6e-12 75.9 67 59.7
QL09p029648 Quercus lobata HOM05D000001 ORTHO05D009739 1.6e-12 75.9 67 58.2
SGA_v2.0_scaffold19G08696 Striga asiatica HOM05D000001 ORTHO05D009739 1.6e-12 75.9 67 59.7
Lj4C686T10 Lonicera japonica HOM05D000001 ORTHO05D009739 2.7e-12 75.1 67 58.2
Oeu002389.1 Olea europaea HOM05D000001 ORTHO05D009739 3.5e-12 74.7 67 55.2
Medtr3g088835 Medicago truncatula HOM05D000001 ORTHO05D009739 7.9e-12 73.6 67 55.2
Ca_16633_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009739 1.0e-11 73.2 67 53.7
Rhsim11G0074500 Rhododendron simsii HOM05D000001 ORTHO05D009739 3.9e-11 71.2 67 56.7
CiPaw.15G024300 Carya illinoinensis HOM05D000001 ORTHO05D009739 6.7e-11 70.5 67 55.2
Migut.N03252 Erythranthe guttata HOM05D000001 ORTHO05D009739 6.7e-11 70.5 67 52.2
Lalb_Chr11g0066291 Lupinus albus HOM05D000001 ORTHO05D009739 6.7e-11 70.5 67 55.2
VMungo1309G0415 Vigna mungo HOM05D000001 ORTHO05D009739 1.5e-10 69.3 67 56.7
Nn5g28504 Nelumbo nucifera HOM05D000001 ORTHO05D009739 1.9e-10 68.9 80 52.5
CSS0042174 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009739 3.3e-10 68.2 68 55.9
Dinv25774 Davidia involucrata HOM05D000001 ORTHO05D009739 3.3e-10 68.2 67 55.2
Lj1g0024075 Lotus japonicus HOM05D000001 ORTHO05D009739 4.3e-10 67.8 67 52.2
Sed0009758 Sechium edule HOM05D000001 ORTHO05D009739 7.4e-10 67.0 67 56.7
Atru.chr13.1638 Acer truncatum HOM05D000001 ORTHO05D009739 1.3e-09 66.2 67 53.7
MBI03_g20845_MAGBIO Magnolia biondii HOM05D001053 ORTHO05D008021 1.3e-09 66.2 67 55.2
Solyc04g063340.3 Solanum lycopersicum HOM05D000001 ORTHO05D009739 1.3e-09 66.2 67 55.2
PGSC0003DMG400024861 Solanum tuberosum HOM05D000001 ORTHO05D009739 1.3e-09 66.2 67 55.2
Sopen04g026250 Solanum pennellii HOM05D000001 ORTHO05D009739 1.6e-09 65.9 67 55.2
Thecc.08G137700 Theobroma cacao HOM05D000001 ORTHO05D009739 2.1e-09 65.5 71 49.3
Actinidia29499 Actinidia chinensis HOM05D000001 ORTHO05D009739 8.1e-09 63.5 73 49.3
CANSAT64G1842 Cannabis sativa HOM05D000001 ORTHO05D009739 8.1e-09 63.5 67 52.2
Nitab4.5_0000174g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009739 8.1e-09 63.5 67 52.2
CAN.G46.27 Capsicum annuum HOM05D000001 ORTHO05D009739 1.1e-08 63.2 67 52.2
COL.COLO4_38154 Corchorus olitorius HOM05D000001 ORTHO05D009739 1.1e-08 63.2 67 49.3
CsaV3_6G031160 Cucumis sativus L. HOM05D000001 ORTHO05D009739 1.1e-08 63.2 67 55.2
Nitab4.5_0001517g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009739 1.1e-08 63.2 67 52.2
ClCG08G006280 Citrullus lanatus HOM05D000001 ORTHO05D009739 1.4e-08 62.8 67 53.7
Aqoxy6G00273 Aquilegia oxysepala HOM05D000001 ORTHO05D009739 2.4e-08 62.0 67 49.3
TWI53G1350 Tripterygium wilfordii HOM05D000001 ORTHO05D009739 5.3e-08 60.8 67 50.7
Peaxi162Scf00066g00117 Petunia axillaris HOM05D000001 ORTHO05D009739 6.9e-08 60.5 67 49.3
Duzib093G0079 Durio zibethinus HOM05D000001 ORTHO05D009429 1.5e-07 59.3 67 47.8
Gohir.D02G075800 Gossypium hirsutum HOM05D000001 ORTHO05D009739 1.5e-07 59.3 67 50.7
Lsat_1_v5_gn_1_70140 Lactuca sativa HOM05D000001 ORTHO05D009739 1.5e-07 59.3 77 44.2
HPP92_003121 Vanilla planifolia HOM05D000001 ORTHO05D009739 1.5e-07 59.3 67 44.8
Gorai.005G085100 Gossypium raimondii HOM05D000001 ORTHO05D009739 2.0e-07 58.9 67 50.7
Gohir.A02G069100 Gossypium hirsutum HOM05D000001 ORTHO05D009739 2.6e-07 58.5 67 50.7
arahy.Tifrunner.gnm1.ann1.MXW5FX Arachis hypogaea HOM05D000001 ORTHO05D009739 4.5e-07 57.8 74 43.2
Sc02g0006570 Simmondsia chinensis HOM05D000001 ORTHO05D009739 5.8e-07 57.4 67 46.3
HanXRQChr01g0000771 Helianthus annuus HOM05D000001 ORTHO05D009739 7.6e-07 57.0 67 41.8
AT1G43980 Arabidopsis thaliana HOM05D000001 ORTHO05D009739 2.2e-06 55.5 67 46.3
Potri.005G185300 Populus trichocarpa HOM05D000001 ORTHO05D009739 2.9e-06 55.1 67 52.2
Thhalv10011320m.g Eutrema salsugineum HOM05D000001 ORTHO05D009739 6.4e-06 53.9 63 44.4
Ah.01g002670 Amaranthus hybridus HOM05D000001 ORTHO05D009739 8.4e-06 53.5 67 46.3


User provided reference genes

Program Settings