Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0038511 Rosa chinensis HOM05D004970 ORTHO05D005665 1.6e-29 132.1 68 100.0
RcHm_v2.0_Chr4g0397231 Rosa chinensis HOM05D004970 ORTHO05D005665 6.3e-18 93.6 48 95.8
RcHm_v2.0_Chr2g0084691 Rosa chinensis HOM05D004970 ORTHO05D005665 5.3e-17 90.5 48 93.8
FvH4_7g34280 Fragaria vesca HOM05D004970 ORTHO05D005665 9.4e-14 79.7 43 93.0
FAN01G0343 Fragaria x ananassa HOM05D004970 ORTHO05D005665 9.4e-14 79.7 43 93.0
FAN10G0750 Fragaria x ananassa HOM05D004970 ORTHO05D005665 9.4e-14 79.7 43 93.0
RcHm_v2.0_Chr1g0384631 Rosa chinensis HOM05D004970 ORTHO05D005665 9.4e-14 79.7 43 93.0
Prupe.2G329700 Prunus persica HOM05D004970 ORTHO05D005665 1.2e-13 79.3 43 90.7
FAN03G2928 Fragaria x ananassa HOM05D004970 ORTHO05D005665 2.1e-13 78.6 43 90.7
Atru.chr12.1813 Acer truncatum HOM05D004970 ORTHO05D005665 2.7e-13 78.2 43 88.4
CiPaw.05G210700 Carya illinoinensis HOM05D004970 ORTHO05D005665 2.7e-13 78.2 43 90.7
MD01G1240100 Malus domestica HOM05D004970 ORTHO05D005665 2.7e-13 78.2 43 88.4
MD07G1311500 Malus domestica HOM05D004970 ORTHO05D005665 2.7e-13 78.2 43 88.4
Thecc.05G227300 Theobroma cacao HOM05D004970 ORTHO05D005665 2.7e-13 78.2 43 88.4
ClCG02G007910 Citrullus lanatus HOM05D004970 ORTHO05D005665 3.6e-13 77.8 43 88.4
Sed0007466 Sechium edule HOM05D004970 ORTHO05D005665 3.6e-13 77.8 43 88.4
Eucgr.A02994 Eucalyptus grandis HOM05D004970 ORTHO05D005665 4.7e-13 77.4 43 88.4
Cpa.g.sc3807.1 Carica papaya HOM05D004970 ORTHO05D005665 6.1e-13 77.0 43 88.4
Sabra13G0064900 Salix brachista HOM05D004970 ORTHO05D005665 6.1e-13 77.0 43 86.0
THA.LOC104821684 Tarenaya hassleriana HOM05D004970 ORTHO05D005665 6.1e-13 77.0 43 88.4
Cc02_g00040 Coffea canephora HOM05D004970 ORTHO05D005665 8.0e-13 76.6 43 86.0
MELO3C024760.2 Cucumis melo HOM05D004970 ORTHO05D005665 8.0e-13 76.6 43 86.0
CsaV3_2G035830 Cucumis sativus L. HOM05D004970 ORTHO05D005665 8.0e-13 76.6 43 86.0
PGSC0003DMG400026491 Solanum tuberosum HOM05D004970 ORTHO05D005665 8.0e-13 76.6 45 82.2
Aa31LG2G2110 Aethionema arabicum HOM05D004970 ORTHO05D005665 1.0e-12 76.3 43 86.0
AL2G19270 Arabidopsis lyrata HOM05D004970 ORTHO05D005665 1.0e-12 76.3 43 86.0
AT1G64860 Arabidopsis thaliana HOM05D004970 ORTHO05D005665 1.0e-12 76.3 43 86.0
BcaB05g23594 Brassica carinata HOM05D004970 ORTHO05D005665 1.0e-12 76.3 43 86.0
BcaC03g16031 Brassica carinata HOM05D004970 ORTHO05D005665 1.0e-12 76.3 43 86.0
C02p37850 Brassica napus HOM05D004970 ORTHO05D005665 1.0e-12 76.3 43 86.0
BolC2t09801H Brassica oleracea HOM05D004970 ORTHO05D005665 1.0e-12 76.3 43 86.0
Carub.0002s0979 Capsella rubella HOM05D004970 ORTHO05D005665 1.0e-12 76.3 43 86.0
Cfa016111 Carpinus fangiana HOM05D004970 ORTHO05D005665 1.0e-12 76.3 43 86.0
Haze_00346 Corylus avellana HOM05D004970 ORTHO05D005665 1.0e-12 76.3 43 86.0
Thhalv10002486m.g Eutrema salsugineum HOM05D004970 ORTHO05D005665 1.0e-12 76.3 43 86.0
Sp5g19000 Schrenkiella parvula HOM05D004970 ORTHO05D005665 1.0e-12 76.3 43 86.0
A02p24000 Brassica napus HOM05D004970 ORTHO05D005665 1.4e-12 75.9 43 83.7
BraA02t07395Z Brassica rapa HOM05D004970 ORTHO05D005665 1.4e-12 75.9 43 83.7
COL.COLO4_08410 Corchorus olitorius HOM05D004970 ORTHO05D005665 1.4e-12 75.9 43 88.4
Manes.09G130800 Manihot esculenta HOM05D004970 ORTHO05D005665 1.4e-12 75.9 43 83.7
Potri.019G043300 Populus trichocarpa HOM05D004970 ORTHO05D005665 1.4e-12 75.9 43 83.7
Sabra19G0054000 Salix brachista HOM05D004970 ORTHO05D005665 1.4e-12 75.9 43 83.7
CiPaw.06G037800 Carya illinoinensis HOM05D004970 ORTHO05D005665 1.8e-12 75.5 43 86.0
TWI32G0575 Tripterygium wilfordii HOM05D004970 ORTHO05D005665 1.8e-12 75.5 43 81.4
GSVIVG01024261001 Vitis vinifera HOM05D004970 ORTHO05D005665 1.8e-12 75.5 43 86.0
CARHR056270 Cardamine hirsuta HOM05D004970 ORTHO05D005665 2.3e-12 75.1 43 83.7
Gohir.D11G234800 Gossypium hirsutum HOM05D004970 ORTHO05D005665 2.3e-12 75.1 47 78.7
Gorai.007G247500 Gossypium raimondii HOM05D004970 ORTHO05D005665 2.3e-12 75.1 47 78.7
Potri.013G075400 Populus trichocarpa HOM05D004970 ORTHO05D005665 2.3e-12 75.1 43 83.7
TAR375G0320 Trochodendron aralioides HOM05D004970 ORTHO05D005665 2.3e-12 75.1 43 86.0
Ciclev10031289m.g Citrus clementina HOM05D004970 ORTHO05D005665 3.0e-12 74.7 43 81.4
Gohir.D08G239800 Gossypium hirsutum HOM05D004970 ORTHO05D005665 3.0e-12 74.7 43 83.7
Gorai.004G255000 Gossypium raimondii HOM05D004970 ORTHO05D005665 3.0e-12 74.7 43 83.7
Nn1g09277 Nelumbo nucifera HOM05D004970 ORTHO05D005665 3.0e-12 74.7 43 83.7
Sopen03g028090 Solanum pennellii HOM05D004970 ORTHO05D005665 3.0e-12 74.7 43 83.7
Gohir.A11G221400 Gossypium hirsutum HOM05D004970 ORTHO05D005665 4.0e-12 74.3 43 86.0
Actinidia24515 Actinidia chinensis HOM05D004970 ORTHO05D005665 5.2e-12 73.9 43 83.7
MSTRG.8566 Avicennia marina HOM05D004970 ORTHO05D005665 5.2e-12 73.9 43 81.4
CANSAT21G0704 Cannabis sativa HOM05D004970 ORTHO05D005665 5.2e-12 73.9 43 86.0
Lalb_Chr19g0140121 Lupinus albus HOM05D004970 ORTHO05D005665 5.2e-12 73.9 43 83.7
Aqoxy3G01903 Aquilegia oxysepala HOM05D004970 ORTHO05D005665 6.8e-12 73.6 43 83.7
Duzib177G0786 Durio zibethinus HOM05D004970 ORTHO05D005665 6.8e-12 73.6 43 86.0
Nn3g19169 Nelumbo nucifera HOM05D004970 ORTHO05D005665 6.8e-12 73.6 43 86.0
CAN.G732.31 Capsicum annuum HOM05D004970 ORTHO05D005665 8.8e-12 73.2 43 81.4
Duzib128G2026 Durio zibethinus HOM05D004970 ORTHO05D005665 8.8e-12 73.2 43 83.7
Gohir.A08G221630 Gossypium hirsutum HOM05D004970 ORTHO05D005665 8.8e-12 73.2 43 81.4
Solyc03g097320.3 Solanum lycopersicum HOM05D004970 ORTHO05D005665 1.2e-11 72.8 43 81.4
Migut.H00003 Erythranthe guttata HOM05D004970 ORTHO05D005665 1.5e-11 72.4 42 85.7
Oeu028991.1 Olea europaea HOM05D004970 ORTHO05D005665 1.5e-11 72.4 43 81.4
Dinv17237 Davidia involucrata HOM05D004970 ORTHO05D005665 2.0e-11 72.0 43 83.7
MBI04_g30791_MAGBIO Magnolia biondii HOM05D004970 ORTHO05D005665 2.0e-11 72.0 43 81.4
PSO063G5802 Papaver somniferum HOM05D004970 ORTHO05D005665 2.0e-11 72.0 43 79.1
PSO782G0173 Papaver somniferum HOM05D004970 ORTHO05D005665 2.0e-11 72.0 43 79.1
TWI60G0079 Tripterygium wilfordii HOM05D004970 ORTHO05D005665 2.0e-11 72.0 43 76.7
Ah.10g025760 Amaranthus hybridus HOM05D004970 ORTHO05D005665 2.6e-11 71.6 43 83.7
MSTRG.26919 Avicennia marina HOM05D004970 ORTHO05D005665 2.6e-11 71.6 43 81.4
arahy.Tifrunner.gnm1.ann1.N044W1 Arachis hypogaea HOM05D004970 ORTHO05D005665 3.4e-11 71.2 43 76.7
arahy.Tifrunner.gnm1.ann1.TJCL76 Arachis hypogaea HOM05D004970 ORTHO05D005665 3.4e-11 71.2 43 76.7
Glyma.09G223600 Glycine max HOM05D004970 ORTHO05D005665 3.4e-11 71.2 43 81.4
Glyma.12G013300 Glycine max HOM05D004970 ORTHO05D005665 3.4e-11 71.2 43 81.4
Manes.08G159000 Manihot esculenta HOM05D004970 ORTHO05D005665 3.4e-11 71.2 43 79.1
Nitab4.5_0005545g0050 Nicotiana tabacum HOM05D004970 ORTHO05D005665 3.4e-11 71.2 43 81.4
TPR.G20254 Trifolium pratense HOM05D004970 ORTHO05D005665 3.4e-11 71.2 43 79.1
Lj3g0014992 Lotus japonicus HOM05D004970 ORTHO05D005665 4.4e-11 70.9 43 81.4
VMungo1127G0435 Vigna mungo HOM05D004970 ORTHO05D005665 4.4e-11 70.9 43 79.1
EL10Ac2g02539 Beta vulgaris HOM05D004970 ORTHO05D005665 5.7e-11 70.5 43 81.4
CSS0006334 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 5.7e-11 70.5 43 79.1
CSS0029772 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 5.7e-11 70.5 43 79.1
Ca_00814_v3 Cicer arietinum L. HOM05D004970 ORTHO05D005665 5.7e-11 70.5 43 79.1
Ca_13824_v3 Cicer arietinum L. HOM05D004970 ORTHO05D005665 5.7e-11 70.5 43 79.1
Peaxi162Scf00516g00423 Petunia axillaris HOM05D004970 ORTHO05D005665 5.7e-11 70.5 43 79.1
Phvul.011G016400 Phaseolus vulgaris HOM05D004970 ORTHO05D005665 5.7e-11 70.5 43 76.7
Sed0000344 Sechium edule HOM05D004970 ORTHO05D005665 5.7e-11 70.5 43 79.1
ATR0568G198 Amborella trichopoda HOM05D004970 ORTHO05D005665 7.5e-11 70.1 42 78.6
Peaxi162Scf00815g00359 Petunia axillaris HOM05D004970 ORTHO05D009229 9.8e-11 69.7 43 79.1
AUR62024839 Chenopodium quinoa HOM05D004970 ORTHO05D005665 1.3e-10 69.3 43 81.4
AUR62032380 Chenopodium quinoa HOM05D004970 ORTHO05D005665 1.3e-10 69.3 43 81.4
SalBow1G3212 Salvia bowleyana HOM05D004970 ORTHO05D005665 1.3e-10 69.3 43 76.7
Nitab4.5_0000021g0930 Nicotiana tabacum HOM05D004970 ORTHO05D005665 1.7e-10 68.9 43 79.1
Medtr0172s0030 Medicago truncatula HOM05D004970 ORTHO05D005665 2.2e-10 68.6 43 76.7
Nitab4.5_0000645g0090 Nicotiana tabacum HOM05D004970 ORTHO05D005665 2.2e-10 68.6 43 76.7
Nitab4.5_0002998g0010 Nicotiana tabacum HOM05D004970 ORTHO05D005665 2.2e-10 68.6 43 76.7
CSS0041522 Camellia sinensis var. sinensis HOM05D004970 ORTHO05D005665 2.8e-10 68.2 43 76.7
DCAR_020435 Daucus carota HOM05D004970 ORTHO05D005665 2.8e-10 68.2 42 76.2
CAN.G65.124 Capsicum annuum HOM05D004970 ORTHO05D005665 4.8e-10 67.4 43 74.4
Peaxi162Scf00815g00348 Petunia axillaris HOM05D004970 ORTHO05D005665 4.8e-10 67.4 42 78.6
SGA_v2.0_scaffold18G08209 Striga asiatica HOM05D004970 ORTHO05D005665 4.8e-10 67.4 43 74.4
Lsat_1_v5_gn_2_127081 Lactuca sativa HOM05D004970 ORTHO05D005665 6.3e-10 67.0 43 74.4
Sc13g0011030 Simmondsia chinensis HOM05D004970 ORTHO05D005665 6.3e-10 67.0 43 76.7
CDE11G0972 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 8.3e-10 66.6 43 72.1
Lsat_1_v5_gn_8_14040 Lactuca sativa HOM05D004970 ORTHO05D005665 8.3e-10 66.6 43 72.1
Solyc06g072710.3 Solanum lycopersicum HOM05D004970 ORTHO05D005665 8.3e-10 66.6 43 74.4
Sopen06g029080 Solanum pennellii HOM05D004970 ORTHO05D005665 8.3e-10 66.6 43 74.4
PGSC0003DMG400027038 Solanum tuberosum HOM05D004970 ORTHO05D005665 8.3e-10 66.6 43 74.4
CDE12G0545 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 1.1e-09 66.2 43 72.1
Lalb_Chr01g0000711 Lupinus albus HOM05D004970 ORTHO05D005665 1.1e-09 66.2 43 74.4
CDE01G0673 Ceratophyllum demersum HOM05D004970 ORTHO05D005665 1.4e-09 65.9 43 69.8
ECA238G3380 Erigeron canadensis HOM05D004970 ORTHO05D005665 1.4e-09 65.9 43 72.1
Lsat_1_v5_gn_9_50600 Lactuca sativa HOM05D004970 ORTHO05D005665 2.4e-09 65.1 43 72.1
ECA233G0740 Erigeron canadensis HOM05D004970 ORTHO05D005665 3.1e-09 64.7 43 69.8
Lj3C883T3 Lonicera japonica HOM05D004970 ORTHO05D005665 7.0e-09 63.5 43 74.4
CSS0044357 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D011772 9.1e-09 63.2 43 72.1
ECA232G1337 Erigeron canadensis HOM05D004970 ORTHO05D005665 9.1e-09 63.2 43 69.8
Psat7g161560 Pisum sativum HOM05D004970 ORTHO05D005665 9.1e-09 63.2 43 72.1
HanXRQChr08g0223061 Helianthus annuus HOM05D004970 ORTHO05D005665 1.2e-08 62.8 43 67.4
Aa31LG3G6170 Aethionema arabicum HOM05D004970 ORTHO05D005665 1.6e-08 62.4 37 78.4
unitig_0.g2402 Utricularia gibba HOM05D004970 ORTHO05D005665 2.0e-08 62.0 42 69.0
HanXRQChr05g0144361 Helianthus annuus HOM05D004970 ORTHO05D005665 2.7e-08 61.6 43 65.1
HanXRQChr14g0461121 Helianthus annuus HOM05D004970 ORTHO05D005665 2.7e-08 61.6 43 67.4
unitig_52.g17686 Utricularia gibba HOM05D004970 ORTHO05D005665 2.7e-08 61.6 42 71.4
HanXRQChr15g0485731 Helianthus annuus HOM05D004970 ORTHO05D005665 4.5e-08 60.8 57 57.9
HPP92_022731 Vanilla planifolia HOM05D004970 ORTHO05D005665 1.7e-07 58.9 43 67.4
HPP92_022744 Vanilla planifolia HOM05D004970 ORTHO05D005665 1.7e-07 58.9 43 67.4
vmacro06358 Vaccinium macrocarpon HOM05D004970 ORTHO05D005665 2.9e-07 58.2 43 62.8
Os08g0163400 Oryza sativa ssp. japonica HOM05D004970 ORTHO05D005665 5.5e-06 53.9 43 60.5


User provided reference genes

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