Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0037551 Rosa chinensis HOM05D003177 ORTHO05D003481 4.0e-34 147.5 74 100.0
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 9.0e-26 119.8 66 86.4
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 9.0e-26 119.8 66 86.4
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.5e-25 119.0 66 84.8
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 4.4e-25 117.5 66 84.8
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.4e-25 117.5 66 84.8
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.6e-25 116.7 64 84.4
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 2.2e-24 115.2 66 84.8
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.9e-24 114.8 66 83.3
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.9e-24 114.0 66 81.8
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 6.4e-24 113.6 56 98.2
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.4e-23 112.5 66 80.3
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 2.4e-23 111.7 66 80.3
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 1.2e-22 109.4 66 78.8
Lj1C863T22 Lonicera japonica HOM05D003177 ORTHO05D003481 1.3e-21 105.9 64 78.1
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 1.1e-20 102.8 66 69.7
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 3.3e-20 101.3 66 72.7
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.3e-19 99.4 64 71.9
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 2.1e-19 98.6 66 68.2
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.8e-19 98.2 66 71.2
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.8e-19 98.2 66 71.2
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 2.8e-19 98.2 66 71.2
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 2.8e-19 98.2 64 75.0
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.6e-19 97.8 66 69.7
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 3.6e-19 97.8 65 69.2
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 3.6e-19 97.8 66 66.7
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 4.8e-19 97.4 66 68.2
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 4.8e-19 97.4 64 73.4
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 6.2e-19 97.1 66 69.7
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 6.2e-19 97.1 66 71.2
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 6.2e-19 97.1 64 70.3
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 8.1e-19 96.7 64 73.4
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 1.1e-18 96.3 66 68.2
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 1.4e-18 95.9 66 72.7
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 2.4e-18 95.1 66 68.2
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 2.4e-18 95.1 64 67.2
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 3.1e-18 94.7 66 66.7
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 4.0e-18 94.4 64 71.9
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 4.0e-18 94.4 64 67.2
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 4.0e-18 94.4 66 69.7
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 5.3e-18 94.0 64 67.2
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 6.9e-18 93.6 66 69.7
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 9.0e-18 93.2 64 71.9
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 9.0e-18 93.2 66 65.2
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 1.2e-17 92.8 66 66.7
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 1.5e-17 92.4 64 67.2
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 2.0e-17 92.0 66 63.6
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 2.0e-17 92.0 66 63.6
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 2.0e-17 92.0 66 63.6
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 2.0e-17 92.0 64 67.2
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 3.4e-17 91.3 66 69.7
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 4.5e-17 90.9 66 63.6
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 5.8e-17 90.5 64 68.8
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 7.6e-17 90.1 66 62.1
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 7.6e-17 90.1 66 62.1
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 7.6e-17 90.1 66 62.1
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 7.6e-17 90.1 66 65.2
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 9.9e-17 89.7 64 67.2
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 9.9e-17 89.7 56 73.2
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 1.3e-16 89.4 64 64.1
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 1.3e-16 89.4 56 71.4
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 4.9e-16 87.4 66 63.6
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 4.9e-16 87.4 64 62.5
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 4.9e-16 87.4 66 63.6
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 4.9e-16 87.4 64 62.5
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 4.9e-16 87.4 55 74.5
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 4.9e-16 87.4 71 57.7
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 8.4e-16 86.7 58 70.7
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 8.4e-16 86.7 66 65.2
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 1.1e-15 86.3 66 60.6
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 1.4e-15 85.9 58 72.4
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 3.2e-15 84.7 62 62.9
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 4.2e-15 84.3 52 75.0
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 4.2e-15 84.3 66 57.6
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 7.1e-15 83.6 55 70.9
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 9.3e-15 83.2 59 64.4
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.2e-14 82.8 64 59.4
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.2e-14 82.8 64 59.4
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 1.2e-14 82.8 64 59.4
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 2.1e-14 82.0 54 66.7
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 2.7e-14 81.6 56 66.1
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 4.6e-14 80.9 55 69.1
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 4.6e-14 80.9 64 62.5
CsaV3_UNG229000 Cucumis sativus L. HOM05D003177 ORTHO05D003481 6.0e-14 80.5 89 51.7
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 1.0e-13 79.7 55 63.6
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 1.0e-13 79.7 64 56.2
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 1.3e-13 79.3 66 56.1
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.3e-13 79.3 55 65.5
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 2.3e-13 78.6 51 70.6
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 2.3e-13 78.6 74 56.8
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 3.0e-13 78.2 58 56.9
Medtr8g070020 Medicago truncatula HOM05D003177 ORTHO05D003481 3.9e-13 77.8 58 55.2
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 6.7e-13 77.0 46 73.9
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 6.7e-13 77.0 56 64.3
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 8.7e-13 76.6 56 62.5
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 8.7e-13 76.6 46 73.9
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 1.1e-12 76.3 52 65.4
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 1.5e-12 75.9 55 65.5
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 1.5e-12 75.9 53 66.0
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 1.9e-12 75.5 55 60.0
Medtr5g034890 Medicago truncatula HOM05D003177 ORTHO05D003481 3.3e-12 74.7 55 58.2
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 5.6e-12 73.9 50 64.0
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 5.6e-12 73.9 48 72.9
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 5.6e-12 73.9 48 72.9
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 7.4e-12 73.6 48 70.8
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 9.6e-12 73.2 55 61.8
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 1.3e-11 72.8 46 67.4
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 3.7e-11 71.2 50 60.0
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 3.7e-11 71.2 50 64.0
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 6.2e-11 70.5 50 60.0
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 6.2e-11 70.5 46 67.4
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 6.2e-11 70.5 66 50.0
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 8.1e-11 70.1 55 58.2
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 1.1e-10 69.7 43 74.4
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 2.4e-10 68.6 48 68.8
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 4.0e-10 67.8 50 64.0
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 4.0e-10 67.8 43 74.4
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 9.0e-10 66.6 54 57.4
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 1.2e-09 66.2 48 64.6
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 5.8e-09 63.9 49 63.3
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 1.3e-08 62.8 51 58.8
ECA240G2036 Erigeron canadensis HOM05D003177 ORTHO05D003481 2.2e-08 62.0 64 42.2
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 4.6e-06 54.3 39 59.0
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 7.9e-06 53.5 38 63.2


User provided reference genes

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