Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0028931 Rosa chinensis HOM05D003546 ORTHO05D005667 1.2e-26 122.5 62 100.0
RcHm_v2.0_Chr5g0028951 Rosa chinensis HOM05D003546 ORTHO05D005667 7.3e-21 103.2 55 90.9
FvH4_3g17420 Fragaria vesca HOM05D003546 ORTHO05D005667 1.6e-20 102.1 55 89.1
FAN11G2746 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.6e-20 102.1 55 89.1
FAN16G1735 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.6e-20 102.1 55 89.1
FAN21G0932 Fragaria x ananassa HOM05D003546 ORTHO05D005667 1.0e-19 99.4 55 87.3
Nitab4.5_0003618g0070 Nicotiana tabacum HOM05D003546 ORTHO05D005667 6.8e-19 96.7 55 81.8
Peaxi162Scf00111g01221 Petunia axillaris HOM05D003546 ORTHO05D005667 6.8e-19 96.7 55 81.8
Duzib213G0800 Durio zibethinus HOM05D003546 ORTHO05D005667 8.9e-19 96.3 55 83.6
Potri.011G114100 Populus trichocarpa HOM05D003546 ORTHO05D005667 1.2e-18 95.9 55 81.8
Sabra11G0100300 Salix brachista HOM05D003546 ORTHO05D005667 1.2e-18 95.9 55 81.8
COL.COLO4_17394 Corchorus olitorius HOM05D003546 ORTHO05D005667 1.5e-18 95.5 55 83.6
Nitab4.5_0001140g0050 Nicotiana tabacum HOM05D003546 ORTHO05D005667 1.5e-18 95.5 55 80.0
CAN.G375.59 Capsicum annuum HOM05D003546 ORTHO05D005667 2.0e-18 95.1 55 81.8
Prupe.4G154400 Prunus persica HOM05D003546 ORTHO05D005667 2.0e-18 95.1 55 83.6
Nn3g20902 Nelumbo nucifera HOM05D003546 ORTHO05D005667 2.6e-18 94.7 55 81.8
MSTRG.6697 Avicennia marina HOM05D003546 ORTHO05D005667 4.4e-18 94.0 59 76.3
MD11G1273100 Malus domestica HOM05D003546 ORTHO05D005667 4.4e-18 94.0 55 78.2
TWI38G2125 Tripterygium wilfordii HOM05D003546 ORTHO05D005667 5.8e-18 93.6 55 81.8
vmacro11984 Vaccinium macrocarpon HOM05D003546 ORTHO05D005667 7.5e-18 93.2 55 78.2
Dinv13351 Davidia involucrata HOM05D003546 ORTHO05D005667 9.8e-18 92.8 55 80.0
Solyc07g062070.3 Solanum lycopersicum HOM05D003546 ORTHO05D005667 9.8e-18 92.8 55 80.0
Sopen07g030330 Solanum pennellii HOM05D003546 ORTHO05D005667 9.8e-18 92.8 55 80.0
Carub.0001s1691 Capsella rubella HOM05D003546 ORTHO05D005667 1.3e-17 92.4 55 76.4
CiPaw.11G154600 Carya illinoinensis HOM05D003546 ORTHO05D005667 1.3e-17 92.4 55 80.0
Ciclev10020632m.g Citrus clementina HOM05D003546 ORTHO05D005667 1.3e-17 92.4 55 80.0
Migut.G00787 Erythranthe guttata HOM05D003546 ORTHO05D005667 1.3e-17 92.4 55 81.8
Oeu058446.1 Olea europaea HOM05D003546 ORTHO05D005667 1.3e-17 92.4 56 80.4
Hund10394 Selenicereus undatus HOM05D003546 ORTHO05D005667 1.3e-17 92.4 55 80.0
CSS0041975 Camellia sinensis var. sinensis HOM05D003546 ORTHO05D005667 1.7e-17 92.0 55 76.4
Hma1.2p1_0713F.1_g207830 Hydrangea macrophylla HOM05D003546 ORTHO05D005667 1.7e-17 92.0 55 80.0
Rhsim06G0212800 Rhododendron simsii HOM05D003546 ORTHO05D005667 1.7e-17 92.0 55 76.4
Rhsim06G0213200 Rhododendron simsii HOM05D003546 ORTHO05D005667 1.7e-17 92.0 55 76.4
PGSC0003DMG400007057 Solanum tuberosum HOM05D003546 ORTHO05D005667 2.2e-17 91.7 55 78.2
Thecc.07G148500 Theobroma cacao HOM05D003546 ORTHO05D005667 2.2e-17 91.7 53 83.0
Aa31LG7G2010 Aethionema arabicum HOM05D003546 ORTHO05D005667 2.9e-17 91.3 53 81.1
AT1G17160 Arabidopsis thaliana HOM05D003546 ORTHO05D005667 2.9e-17 91.3 55 76.4
CARHR017740 Cardamine hirsuta HOM05D003546 ORTHO05D005667 2.9e-17 91.3 55 76.4
PSO541G1993 Papaver somniferum HOM05D003546 ORTHO05D005667 2.9e-17 91.3 55 76.4
QL08p024489 Quercus lobata HOM05D003546 ORTHO05D005667 2.9e-17 91.3 55 78.2
AL1G29390 Arabidopsis lyrata HOM05D003546 ORTHO05D005667 3.7e-17 90.9 55 74.5
Cfa019500 Carpinus fangiana HOM05D003546 ORTHO05D005667 3.7e-17 90.9 55 78.2
Lalb_Chr25g0285581 Lupinus albus HOM05D003546 ORTHO05D005667 3.7e-17 90.9 55 78.2
Oeu010039.1 Olea europaea HOM05D003546 ORTHO05D005667 3.7e-17 90.9 56 76.8
ClCG07G010350 Citrullus lanatus HOM05D003546 ORTHO05D005667 4.9e-17 90.5 55 76.4
MELO3C016138.2 Cucumis melo HOM05D003546 ORTHO05D005667 4.9e-17 90.5 55 76.4
CsaV3_4G007980 Cucumis sativus L. HOM05D003546 ORTHO05D005667 4.9e-17 90.5 55 76.4
PSO675G0773 Papaver somniferum HOM05D003546 ORTHO05D005667 4.9e-17 90.5 55 76.4
TAR627G0069 Trochodendron aralioides HOM05D003546 ORTHO05D005667 4.9e-17 90.5 55 78.2
Aqoxy1G01847 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 6.4e-17 90.1 55 78.2
CANSAT56G3227 Cannabis sativa HOM05D003546 ORTHO05D005667 6.4e-17 90.1 55 76.4
SGA_v2.0_scaffold73G24377 Striga asiatica HOM05D003546 ORTHO05D005667 6.4e-17 90.1 55 80.0
TAR629G0142 Trochodendron aralioides HOM05D003546 ORTHO05D005667 6.4e-17 90.1 55 80.0
unitig_37.g12553 Utricularia gibba HOM05D003546 ORTHO05D005667 6.4e-17 90.1 55 80.0
Sp1g15310 Schrenkiella parvula HOM05D003546 ORTHO05D005667 8.3e-17 89.7 55 74.5
Sc03g0010770 Simmondsia chinensis HOM05D003546 ORTHO05D005667 8.3e-17 89.7 55 76.4
Haze_08456 Corylus avellana HOM05D003546 ORTHO05D005667 1.1e-16 89.4 58 74.1
Ah.06g187600 Amaranthus hybridus HOM05D000137 ORTHO05D000503 1.4e-16 89.0 55 74.5
arahy.Tifrunner.gnm1.ann1.T44SL9 Arachis hypogaea HOM05D003546 ORTHO05D005667 1.4e-16 89.0 55 76.4
arahy.Tifrunner.gnm1.ann1.Y31H1M Arachis hypogaea HOM05D003546 ORTHO05D005667 1.4e-16 89.0 55 76.4
Manes.15G101700 Manihot esculenta HOM05D003546 ORTHO05D005667 1.4e-16 89.0 55 78.2
BcaB07g34045 Brassica carinata HOM05D003546 ORTHO05D005667 1.9e-16 88.6 55 70.9
Cpa.g.sc77.106 Carica papaya HOM05D003546 ORTHO05D005667 1.9e-16 88.6 55 76.4
Gohir.A08G234000 Gossypium hirsutum HOM05D003546 ORTHO05D005667 1.9e-16 88.6 55 78.2
Gohir.D08G254200 Gossypium hirsutum HOM05D003546 ORTHO05D005667 1.9e-16 88.6 55 78.2
Gorai.004G271100 Gossypium raimondii HOM05D003546 ORTHO05D005667 1.9e-16 88.6 55 78.2
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 2.4e-16 88.2 55 72.7
DCAR_021047 Daucus carota HOM05D003546 ORTHO05D005667 2.4e-16 88.2 55 78.2
Thhalv10007918m.g Eutrema salsugineum HOM05D003546 ORTHO05D005667 2.4e-16 88.2 55 70.9
Sed0005020 Sechium edule HOM05D003546 ORTHO05D005667 2.4e-16 88.2 61 75.4
A06p13070 Brassica napus HOM05D003546 ORTHO05D005667 3.2e-16 87.8 55 70.9
C05p15580 Brassica napus HOM05D003546 ORTHO05D005667 3.2e-16 87.8 55 70.9
BraA06t24467Z Brassica rapa HOM05D003546 ORTHO05D005667 3.2e-16 87.8 55 70.9
Dinv26695 Davidia involucrata HOM05D003546 ORTHO05D005667 3.2e-16 87.8 55 76.4
BcaC05g25661 Brassica carinata HOM05D003546 ORTHO05D005667 4.1e-16 87.4 55 69.1
BolC5t30265H Brassica oleracea HOM05D003546 ORTHO05D005667 4.1e-16 87.4 55 69.1
AUR62019676 Chenopodium quinoa HOM05D003546 ORTHO05D005667 5.4e-16 87.0 55 70.9
Sed0015060 Sechium edule HOM05D003546 ORTHO05D005667 5.4e-16 87.0 55 74.5
arahy.Tifrunner.gnm1.ann1.UIE2A5 Arachis hypogaea HOM05D003546 ORTHO05D005667 7.0e-16 86.7 55 74.5
THA.LOC104812287 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 7.0e-16 86.7 55 74.5
BcaC07g41403 Brassica carinata HOM05D003546 ORTHO05D005667 9.2e-16 86.3 55 69.1
Actinidia12611 Actinidia chinensis HOM05D003546 ORTHO05D005667 1.2e-15 85.9 55 74.5
Lsat_1_v5_gn_7_100340 Lactuca sativa HOM05D003546 ORTHO05D005667 1.2e-15 85.9 55 74.5
Eucgr.F03224 Eucalyptus grandis HOM05D003546 ORTHO05D005667 2.7e-15 84.7 55 76.4
THA.LOC104813974 Tarenaya hassleriana HOM05D003546 ORTHO05D005667 2.7e-15 84.7 55 72.7
Lj8A144T67 Lonicera japonica HOM05D003546 ORTHO05D005667 3.5e-15 84.3 55 78.2
SalBow8G3953 Salvia bowleyana HOM05D003546 ORTHO05D005667 3.5e-15 84.3 55 76.4
Medtr2g072830 Medicago truncatula HOM05D003546 ORTHO05D005667 7.8e-15 83.2 55 69.1
TPR.G27299 Trifolium pratense HOM05D003546 ORTHO05D005667 7.8e-15 83.2 55 69.1
A01p26360 Brassica napus HOM05D003546 ORTHO05D014122 1.3e-14 82.4 56 67.9
Ca_03453_v3 Cicer arietinum L. HOM05D003546 ORTHO05D005667 2.3e-14 81.6 55 70.9
HanXRQChr15g0495341 Helianthus annuus HOM05D003546 ORTHO05D005667 2.3e-14 81.6 55 74.5
Atru.chr2.1822 Acer truncatum HOM05D003546 ORTHO05D005667 3.0e-14 81.3 55 76.4
BraA01t02562Z Brassica rapa HOM05D003546 ORTHO05D014122 6.6e-14 80.1 56 66.1
CDE02G3780 Ceratophyllum demersum HOM05D003546 ORTHO05D005667 6.6e-14 80.1 53 75.5
Glyma.15G240800 Glycine max HOM05D003546 ORTHO05D005667 1.5e-13 79.0 55 65.5
ATR0256G001 Amborella trichopoda HOM05D003546 ORTHO05D005667 1.9e-13 78.6 55 67.3
BolC8t52242H Brassica oleracea HOM05D003546 ORTHO05D014122 1.9e-13 78.6 56 64.3
HPP92_024629 Vanilla planifolia HOM05D003546 ORTHO05D005667 1.9e-13 78.6 58 63.8
C04p52320 Brassica napus HOM05D003546 ORTHO05D014122 2.5e-13 78.2 56 66.1
Psat1g007800 Pisum sativum HOM05D003546 ORTHO05D005667 2.5e-13 78.2 55 69.1
C05p52660 Brassica napus HOM05D003546 ORTHO05D014122 5.6e-13 77.0 56 64.3
BolC4t26808H Brassica oleracea HOM05D003546 ORTHO05D014122 5.6e-13 77.0 56 64.3
Aqoxy4G00144 Aquilegia oxysepala HOM05D003546 ORTHO05D005667 9.5e-13 76.3 53 71.7
ECA236G3331 Erigeron canadensis HOM05D003546 ORTHO05D005667 9.5e-13 76.3 55 70.9
A08p37500 Brassica napus HOM05D003546 ORTHO05D014122 1.2e-12 75.9 56 62.5
BcaC02g08580 Brassica carinata HOM05D003546 ORTHO05D014122 1.6e-12 75.5 56 64.3
BcaC01g00338 Brassica carinata HOM05D003546 ORTHO05D005667 2.1e-12 75.1 52 67.3
Glyma.13G263400 Glycine max HOM05D003546 ORTHO05D005667 2.1e-12 75.1 55 61.8
PGR031G2804 Punica granatum HOM05D003546 ORTHO05D005667 2.8e-12 74.7 56 69.6
BcaC02g08582 Brassica carinata HOM05D003546 ORTHO05D014122 3.6e-12 74.3 55 63.6
C02p18050 Brassica napus HOM05D003546 ORTHO05D005667 3.6e-12 74.3 56 62.5
C02p16530 Brassica napus HOM05D003546 ORTHO05D005667 4.7e-12 73.9 51 66.7
BolC2t07734H Brassica oleracea HOM05D003546 ORTHO05D005667 4.7e-12 73.9 48 70.8
Glyma.13G263300 Glycine max HOM05D003546 ORTHO05D005667 8.1e-12 73.2 55 61.8
Lj3g0000931 Lotus japonicus HOM05D003546 ORTHO05D005667 8.1e-12 73.2 55 67.3
SHI19235 Sapria himalayana HOM05D003546 ORTHO05D005667 8.1e-12 73.2 55 65.5
BcaC03g14396 Brassica carinata HOM05D003546 ORTHO05D005667 1.1e-11 72.8 56 60.7
BcaC08g43888 Brassica carinata HOM05D003546 ORTHO05D031910 1.1e-11 72.8 55 60.0
C06p12730 Brassica napus HOM05D003546 ORTHO05D031910 1.1e-11 72.8 55 60.0
BolC2t07938H Brassica oleracea HOM05D003546 ORTHO05D005667 1.1e-11 72.8 56 60.7
BolC6t36430H Brassica oleracea HOM05D003546 ORTHO05D031910 1.1e-11 72.8 55 60.0
VMungo1080G1435 Vigna mungo HOM05D003546 ORTHO05D005667 1.1e-11 72.8 55 63.6
Phvul.005G070200 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 2.3e-11 71.6 55 60.0
C02p16330 Brassica napus HOM05D003546 ORTHO05D005667 3.1e-11 71.2 58 62.1
C03p78600 Brassica napus HOM05D003546 ORTHO05D005667 3.1e-11 71.2 54 64.8
Zm00001eb359730 Zea mays HOM05D003546 ORTHO05D005667 5.2e-11 70.5 55 58.2
Os01g0665400 Oryza sativa ssp. japonica HOM05D003546 ORTHO05D005667 2.0e-10 68.6 55 56.4
Phvul.005G070000 Phaseolus vulgaris HOM05D003546 ORTHO05D005667 2.6e-10 68.2 55 60.0
BolC8t47744H Brassica oleracea HOM05D003546 ORTHO05D040745 1.1e-08 62.8 49 59.2
BcaC09g49138 Brassica carinata HOM05D003546 ORTHO05D014122 1.4e-08 62.4 52 53.8
BcaC03g14253 Brassica carinata HOM05D003546 ORTHO05D005667 1.9e-08 62.0 45 60.0
C08p08990 Brassica napus HOM05D003546 ORTHO05D040745 2.4e-08 61.6 53 52.8
C01p42230 Brassica napus HOM05D003546 ORTHO05D014122 3.2e-08 61.2 55 50.9
VMungo1080G0318 Vigna mungo HOM05D003546 ORTHO05D005667 3.2e-08 61.2 55 58.2
GSVIVG01014076001 Vitis vinifera HOM05D003546 ORTHO05D005667 3.2e-08 61.2 38 71.1
Cre10.g424500 Chlamydomonas reinhardtii HOM05D003546 ORTHO05D005667 4.1e-08 60.8 56 57.1
Cc05_g10570 Coffea canephora HOM05D003546 ORTHO05D005667 9.2e-08 59.7 41 68.3
Mapoly0014s0091 Marchantia polymorpha HOM05D003546 ORTHO05D005667 4.6e-07 57.4 65 46.2
Pp3c5_14610 Physcomitrium patens HOM05D000518 ORTHO05D005667 4.6e-07 57.4 62 51.6
Pp3c6_13210 Physcomitrium patens HOM05D003546 ORTHO05D005667 4.6e-07 57.4 62 50.0
C03p54870 Brassica napus HOM05D003546 ORTHO05D005667 3.9e-06 54.3 56 48.2
A09p60550 Brassica napus HOM05D003546 ORTHO05D005667 5.1e-06 53.9 38 57.9
BraA09t41425Z Brassica rapa HOM05D003546 ORTHO05D005667 5.1e-06 53.9 38 57.9


User provided reference genes

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