Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0025841 Rosa chinensis HOM05D002578 ORTHO05D002698 2.4e-44 181.8 91 100.0
RcHm_v2.0_CPg0501841 Rosa chinensis HOM05D002578 ORTHO05D002698 7.4e-14 80.5 44 88.6
RcHm_v2.0_Chr1g0329561 Rosa chinensis HOM05D002578 ORTHO05D002698 2.2e-13 79.0 44 86.4
FAN09G4709 Fragaria x ananassa HOM05D002578 ORTHO05D002698 3.1e-12 75.1 44 84.1
Nn070s42374 Nelumbo nucifera HOM05D002578 ORTHO05D002698 9.1e-12 73.6 63 61.9
Gohir.1Z049366 Gossypium hirsutum HOM05D002578 ORTHO05D002698 1.2e-11 73.2 63 61.9
Gohir.1Z049734 Gossypium hirsutum HOM05D002578 ORTHO05D002698 1.2e-11 73.2 63 61.9
Gorai.009G325200 Gossypium raimondii HOM05D002578 ORTHO05D002698 1.2e-11 73.2 63 61.9
PGR111G0094 Punica granatum HOM05D002578 ORTHO05D002698 2.0e-11 72.4 44 79.5
Gohir.A12G024432 Gossypium hirsutum HOM05D002578 ORTHO05D002698 2.6e-11 72.0 63 61.9
Gohir.D01G102177 Gossypium hirsutum HOM05D002578 ORTHO05D002698 3.4e-11 71.6 63 60.3
Sed0005264 Sechium edule HOM05D002578 ORTHO05D002698 4.5e-11 71.2 44 77.3
DCAR_032525 Daucus carota HOM05D002578 ORTHO05D002698 5.9e-11 70.9 65 61.5
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 7.7e-11 70.5 67 55.2
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 7.7e-11 70.5 44 79.5
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 1.0e-10 70.1 42 81.0
PSO548G0035 Papaver somniferum HOM05D002578 ORTHO05D002698 1.0e-10 70.1 42 81.0
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.0e-10 70.1 44 79.5
Ah.10g027310 Amaranthus hybridus HOM05D002578 ORTHO05D002698 1.3e-10 69.7 44 75.0
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 1.3e-10 69.7 44 79.5
AL2G20520 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 2.2e-10 68.9 42 78.6
AL2G21760 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 2.2e-10 68.9 42 78.6
ATCG00810 Arabidopsis thaliana HOM05D002578 ORTHO05D002698 2.2e-10 68.9 42 78.6
BolC7t41707H Brassica oleracea HOM05D002578 ORTHO05D002698 2.2e-10 68.9 42 78.6
BolSC29t60613H Brassica oleracea HOM05D002578 ORTHO05D002698 2.2e-10 68.9 42 78.6
BolSC35t60673H Brassica oleracea HOM05D002578 ORTHO05D002698 2.2e-10 68.9 42 78.6
HanXRQChr16g0500141 Helianthus annuus HOM05D002578 ORTHO05D002698 2.2e-10 68.9 64 59.4
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 2.9e-10 68.6 41 78.0
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 2.9e-10 68.6 41 78.0
Hma1.2p1_0104F.1_g050125 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.9e-10 68.6 61 60.7
Hma1.2p1_0192F.1_g083740 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.9e-10 68.6 61 60.7
Hma1.2p1_0247F.1_g101834 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.9e-10 68.6 61 60.7
Hma1.2p1_0298F.1_g117736 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.9e-10 68.6 61 60.7
Hma1.2p1_0818F.1_g223301 Hydrangea macrophylla HOM05D002578 ORTHO05D002698 2.9e-10 68.6 61 60.7
HanXRQChr00c0593g0576411 Helianthus annuus HOM05D002578 ORTHO05D002698 5.0e-10 67.8 61 60.7
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 5.0e-10 67.8 61 60.7
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 5.0e-10 67.8 61 60.7
HanXRQChr05g0152531 Helianthus annuus HOM05D002578 ORTHO05D002698 5.0e-10 67.8 61 60.7
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 5.0e-10 67.8 61 60.7
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 5.0e-10 67.8 61 60.7
HanXRQChr11g0327011 Helianthus annuus HOM05D002578 ORTHO05D002698 5.0e-10 67.8 61 60.7
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 5.0e-10 67.8 61 60.7
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 5.0e-10 67.8 61 60.7
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 5.0e-10 67.8 61 60.7
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 5.0e-10 67.8 61 60.7
C09p40110 Brassica napus HOM05D002578 ORTHO05D002698 6.5e-10 67.4 65 55.4
BolC9t56906H Brassica oleracea HOM05D002578 ORTHO05D002698 6.5e-10 67.4 65 55.4
AL1G45060 Arabidopsis lyrata HOM05D002578 ORTHO05D002698 8.5e-10 67.0 42 76.2
CAN.G114.8 Capsicum annuum HOM05D002578 ORTHO05D002698 8.5e-10 67.0 44 75.0
Nitab4.5_0004697g0040 Nicotiana tabacum HOM05D002578 ORTHO05D002698 8.5e-10 67.0 44 77.3
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 8.5e-10 67.0 44 70.5
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 1.1e-09 66.6 42 78.6
Ciclev10005921m.g Citrus clementina HOM05D002578 ORTHO05D002698 1.4e-09 66.2 78 46.2
Lsat_1_v5_gn_5_50481 Lactuca sativa HOM05D002578 ORTHO05D002698 1.4e-09 66.2 61 59.0
RcHm_v2.0_Chr6g0286361 Rosa chinensis HOM05D002578 ORTHO05D002698 1.4e-09 66.2 44 77.3
HPP92_007212 Vanilla planifolia HOM05D002578 ORTHO05D002698 1.4e-09 66.2 44 75.0
Nitab4.5_0004430g0050 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.9e-09 65.9 63 58.7
Oeu060398.1 Olea europaea HOM05D002578 ORTHO05D002698 1.9e-09 65.9 42 78.6
Cfa007862 Carpinus fangiana HOM05D002578 ORTHO05D002698 3.2e-09 65.1 83 47.0
ClCG04G000500 Citrullus lanatus HOM05D002578 ORTHO05D002698 3.2e-09 65.1 46 69.6
QL02p048586 Quercus lobata HOM05D002578 ORTHO05D002698 4.2e-09 64.7 44 75.0
SGA_v2.0_scaffold907G53717 Striga asiatica HOM05D002578 ORTHO05D002698 5.5e-09 64.3 40 80.0
CiPaw.03G067300 Carya illinoinensis HOM05D002578 ORTHO05D002698 7.2e-09 63.9 43 74.4
Lj2P1239T81 Lonicera japonica HOM05D002578 ORTHO05D002698 7.2e-09 63.9 42 76.2
Lju5009P0T59 Lonicera japonica HOM05D002578 ORTHO05D002698 7.2e-09 63.9 42 76.2
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 9.4e-09 63.5 44 70.5
Nitab4.5_0000382g0100 Nicotiana tabacum HOM05D002578 ORTHO05D002698 1.2e-08 63.2 44 75.0
Oeu054717.1 Olea europaea HOM05D002578 ORTHO05D002698 1.2e-08 63.2 42 76.2
VMungo0464G0334 Vigna mungo HOM05D002578 ORTHO05D002698 1.6e-08 62.8 66 53.0
Lj2C1234G17 Lonicera japonica HOM05D002578 ORTHO05D002698 2.1e-08 62.4 42 73.8
Lj2g0018876 Lotus japonicus HOM05D002578 ORTHO05D002698 2.1e-08 62.4 44 70.5
Ca_04123_v3 Cicer arietinum L. HOM05D002578 ORTHO05D002698 2.7e-08 62.0 44 70.5
Lalb_Chr03g0038431 Lupinus albus HOM05D002578 ORTHO05D002698 2.7e-08 62.0 78 48.7
TPR.G22135 Trifolium pratense HOM05D002578 ORTHO05D002698 3.6e-08 61.6 44 68.2
Glyma.05G001100 Glycine max HOM05D002578 ORTHO05D002698 4.7e-08 61.2 81 44.4
Phvul.004G001400 Phaseolus vulgaris HOM05D002578 ORTHO05D002698 4.7e-08 61.2 44 68.2
arahy.Tifrunner.gnm1.ann1.900JYR Arachis hypogaea HOM05D002578 ORTHO05D002698 6.1e-08 60.8 44 68.2
arahy.Tifrunner.gnm1.ann1.MT7PBJ Arachis hypogaea HOM05D002578 ORTHO05D002698 6.1e-08 60.8 44 68.2
Lj1g0008959 Lotus japonicus HOM05D002578 ORTHO05D002698 6.1e-08 60.8 85 48.2
Glyma.19G001100 Glycine max HOM05D002578 ORTHO05D002698 1.0e-07 60.1 81 43.2
Medtr7g100410 Medicago truncatula HOM05D002578 ORTHO05D002698 1.0e-07 60.1 44 68.2
Psat1g052200 Pisum sativum HOM05D002578 ORTHO05D002698 1.4e-07 59.7 44 63.6
Os12g0488300 Oryza sativa ssp. japonica HOM05D002578 ORTHO05D002698 1.8e-07 59.3 65 50.8
Zm00001eb435110 Zea mays HOM05D002578 ORTHO05D002698 1.8e-07 59.3 39 74.4
Zm00001eb437150 Zea mays HOM05D002578 ORTHO05D002698 1.8e-07 59.3 39 74.4
Zm00001eb442200 Zea mays HOM05D002578 ORTHO05D002698 1.8e-07 59.3 39 74.4
HanXRQChr16g0503671 Helianthus annuus HOM05D002578 ORTHO05D002698 3.9e-07 58.2 42 69.0
Solyc12g035880.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 5.1e-07 57.8 42 66.7
Gohir.A04G116550 Gossypium hirsutum HOM05D002578 ORTHO05D002698 2.0e-06 55.8 62 46.8
Cre13.g580850 Chlamydomonas reinhardtii HOM05D002578 ORTHO05D002698 5.7e-06 54.3 42 61.9


User provided reference genes

Program Settings