Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0024291 Rosa chinensis HOM05D003504 ORTHO05D004006 3.7e-102 374.8 177 100.0
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 4.4e-95 351.3 174 95.4
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 5.7e-95 350.9 174 94.8
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.3e-94 349.7 174 94.8
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.3e-94 349.7 174 94.8
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 4.7e-89 331.3 174 89.1
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 4.0e-88 328.2 174 87.4
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 6.3e-86 320.9 174 85.6
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 7.7e-84 313.9 164 90.2
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 6.8e-80 300.8 170 85.3
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 4.9e-78 294.7 169 82.2
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 6.3e-78 294.3 169 81.7
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 1.8e-77 292.7 174 79.9
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 2.4e-77 292.4 174 78.7
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 2.4e-77 292.4 174 78.7
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 7.0e-77 290.8 174 78.2
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 2.7e-76 288.9 174 77.0
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 1.0e-75 287.0 169 80.5
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 2.9e-75 285.4 174 77.0
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 3.3e-74 282.0 171 79.5
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 7.3e-74 280.8 175 74.9
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 3.6e-73 278.5 174 78.2
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 4.7e-73 278.1 174 77.6
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 5.8e-71 271.2 170 75.9
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 5.8e-71 271.2 175 73.1
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 5.8e-71 271.2 174 75.3
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 1.7e-70 269.6 167 76.0
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 6.4e-70 267.7 173 74.0
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 8.3e-70 267.3 173 74.6
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 2.4e-69 265.8 174 73.0
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 7.0e-69 264.2 176 73.9
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 2.3e-67 259.2 169 71.6
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 8.6e-67 257.3 170 74.7
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 1.6e-65 253.1 170 72.9
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 2.9e-62 242.3 159 73.6
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 2.9e-62 242.3 150 75.3
Ca_24186_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 3.7e-62 241.9 174 68.4
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 1.9e-61 239.6 170 68.8
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 1.9e-61 239.6 156 74.4
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 2.4e-61 239.2 153 76.5
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 3.2e-61 238.8 172 70.3
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 3.2e-61 238.8 156 75.0
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 3.2e-61 238.8 154 74.0
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 9.2e-61 237.3 156 73.1
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 9.2e-61 237.3 154 74.0
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 1.6e-60 236.5 156 76.3
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 3.5e-60 235.3 156 72.4
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 3.5e-60 235.3 156 73.7
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 1.3e-59 233.4 156 73.1
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 1.7e-59 233.0 156 73.1
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 6.6e-59 231.1 172 66.3
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 6.6e-59 231.1 156 71.8
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 3.3e-58 228.8 156 72.4
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 4.3e-58 228.4 156 71.2
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 7.3e-58 227.6 170 66.5
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 7.3e-58 227.6 152 71.7
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 9.5e-58 227.3 173 65.9
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 1.2e-57 226.9 156 69.9
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 1.2e-57 226.9 173 65.9
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 1.6e-57 226.5 173 65.3
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 1.4e-56 223.4 155 69.7
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 1.8e-56 223.0 156 69.2
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 5.2e-56 221.5 155 68.4
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 8.9e-56 220.7 167 65.3
Sc15g0007430 Simmondsia chinensis HOM05D003504 ORTHO05D004006 8.9e-56 220.7 167 65.3
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 2.2e-54 216.1 156 69.2
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 4.9e-54 214.9 174 63.2
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 1.9e-53 213.0 172 62.2
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 4.1e-53 211.8 157 66.9
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 4.1e-53 211.8 174 62.6
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 4.1e-53 211.8 174 62.6
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 5.4e-53 211.5 156 64.7
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 9.2e-53 210.7 152 66.4
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 1.2e-52 210.3 170 64.1
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 1.2e-52 210.3 159 64.2
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 2.1e-52 209.5 164 62.8
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 2.7e-52 209.1 170 61.8
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 1.0e-51 207.2 151 65.6
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 1.7e-51 206.5 178 62.4
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 2.5e-50 202.6 152 68.4
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 3.3e-50 202.2 157 63.1
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 3.3e-50 202.2 158 65.8
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 5.6e-50 201.4 155 64.5
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 9.6e-50 200.7 155 63.2
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 9.6e-50 200.7 156 62.2
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 1.2e-49 200.3 158 63.3
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 1.6e-49 199.9 152 67.8
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 3.6e-49 198.7 174 60.3
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 4.7e-49 198.4 159 62.3
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 6.2e-49 198.0 152 65.8
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 8.1e-49 197.6 167 59.9
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 1.1e-48 197.2 156 63.5
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 3.1e-48 195.7 152 65.1
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 4.0e-48 195.3 152 64.5
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 5.2e-48 194.9 152 63.8
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 6.8e-48 194.5 167 58.7
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 8.9e-48 194.1 152 64.5
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 2.0e-47 193.0 156 62.2
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 2.0e-47 193.0 156 62.2
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 5.8e-47 191.4 152 62.5
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 7.6e-47 191.0 157 60.5
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 1.7e-46 189.9 166 58.4
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 4.9e-46 188.3 152 57.2
Psat0s1032g0040 Pisum sativum HOM05D003504 ORTHO05D004006 4.9e-46 188.3 114 78.1
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 5.4e-45 184.9 169 53.8
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 3.9e-43 178.7 154 59.1
Lj6C705G6 Lonicera japonica HOM05D003504 ORTHO05D004006 1.5e-42 176.8 156 57.7
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.8e-40 169.9 167 52.1
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 9.0e-40 167.5 168 51.8
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 9.3e-37 157.5 154 53.2
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.9e-35 152.1 179 44.7
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.5e-34 150.2 154 51.9
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 4.0e-32 142.1 103 70.9
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 2.6e-31 139.4 152 47.4
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 2.4e-29 132.9 102 67.6
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 3.2e-29 132.5 98 71.4
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 1.9e-26 123.2 99 62.6
CBR_g22316 Chara braunii HOM05D003504 ORTHO05D004006 4.2e-21 105.5 142 38.7
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 9.6e-18 94.4 70 72.9
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 1.6e-17 93.6 56 71.4
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 5.3e-16 88.6 74 67.6
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 1.7e-14 83.6 59 78.0
Zm00001eb110210 Zea mays HOM05D003504 ORTHO05D004006 3.8e-14 82.4 52 84.6
SHI02260 Sapria himalayana HOM05D003504 ORTHO05D004006 1.2e-12 77.4 49 67.3
SHI02261 Sapria himalayana HOM05D003504 ORTHO05D004006 4.6e-12 75.5 77 46.8
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 6.7e-11 71.6 57 68.4
Zm00001eb016900 Zea mays HOM05D009386 ORTHO05D011419 6.3e-09 65.1 46 73.9
SEGI_08102 Sequoiadendron giganteum HOM05D017310 ORTHO05D004006 1.8e-08 63.5 81 43.2
SEGI_26038 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 7.7e-07 58.2 61 49.2


User provided reference genes

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