Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0023381 Rosa chinensis HOM05D002139 ORTHO05D002264 2.9e-23 110.9 52 100.0
RcHm_v2.0_Chr3g0476531 Rosa chinensis HOM05D002139 ORTHO05D002264 1.6e-13 78.6 50 74.0
FAN02G1727 Fragaria x ananassa HOM05D002139 ORTHO05D002264 2.7e-13 77.8 50 74.0
FAN05G0316 Fragaria x ananassa HOM05D002139 ORTHO05D002264 8.0e-13 76.3 50 72.0
FAN05G4464 Fragaria x ananassa HOM05D002139 ORTHO05D002264 8.0e-13 76.3 50 72.0
FvH4_6g20650 Fragaria vesca HOM05D002139 ORTHO05D002264 1.0e-12 75.9 50 70.0
FAN14G5094 Fragaria x ananassa HOM05D002139 ORTHO05D002264 1.0e-12 75.9 50 70.0
FAN09G2846 Fragaria x ananassa HOM05D002139 ORTHO05D002264 2.3e-12 74.7 50 70.0
PGR142G1998 Punica granatum HOM05D002139 ORTHO05D002264 8.8e-12 72.8 50 68.0
Phvul.007G266700 Phaseolus vulgaris HOM05D002139 ORTHO05D002264 2.0e-11 71.6 50 66.0
MD14G1041700 Malus domestica HOM05D002139 ORTHO05D002264 2.6e-11 71.2 50 62.0
Prupe.7G092100 Prunus persica HOM05D002139 ORTHO05D002264 3.4e-11 70.9 50 62.0
TWI74G1382 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 5.7e-11 70.1 50 68.0
Cfa020059 Carpinus fangiana HOM05D002139 ORTHO05D002264 7.5e-11 69.7 50 64.0
Eucgr.K01917 Eucalyptus grandis HOM05D002139 ORTHO05D002264 7.5e-11 69.7 40 75.0
AT3G11780 Arabidopsis thaliana HOM05D002139 ORTHO05D002264 9.8e-11 69.3 50 64.0
Glyma.10G083300 Glycine max HOM05D002139 ORTHO05D002264 1.3e-10 68.9 50 62.0
TPR.G9689 Trifolium pratense HOM05D002139 ORTHO05D002264 1.3e-10 68.9 43 67.4
CiPaw.09G022200 Carya illinoinensis HOM05D002139 ORTHO05D002264 1.7e-10 68.6 50 64.0
TWI53G0030 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 1.7e-10 68.6 50 64.0
CARHR086340 Cardamine hirsuta HOM05D002139 ORTHO05D002264 2.8e-10 67.8 43 69.8
CiPaw.10G019300 Carya illinoinensis HOM05D002139 ORTHO05D002264 3.7e-10 67.4 50 64.0
Duzib106G1445 Durio zibethinus HOM05D002139 ORTHO05D002264 3.7e-10 67.4 50 62.0
MD12G1042800 Malus domestica HOM05D002139 ORTHO05D002264 3.7e-10 67.4 50 58.0
Thecc.05G107700 Theobroma cacao HOM05D002139 ORTHO05D002264 3.7e-10 67.4 50 62.0
VMungo0720G0286 Vigna mungo HOM05D002139 ORTHO05D002264 3.7e-10 67.4 50 62.0
arahy.Tifrunner.gnm1.ann1.BQ28WB Arachis hypogaea HOM05D002139 ORTHO05D002264 4.8e-10 67.0 50 60.0
arahy.Tifrunner.gnm1.ann1.J3XN27 Arachis hypogaea HOM05D002139 ORTHO05D002264 4.8e-10 67.0 50 60.0
Cpa.g.sc1467.2 Carica papaya HOM05D002139 ORTHO05D002264 4.8e-10 67.0 40 72.5
Thhalv10021698m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 4.8e-10 67.0 43 67.4
arahy.Tifrunner.gnm1.ann1.RI9D6L Arachis hypogaea HOM05D002139 ORTHO05D002264 6.3e-10 66.6 50 64.0
QL07p027306 Quercus lobata HOM05D002139 ORTHO05D002264 6.3e-10 66.6 50 62.0
Eucgr.A02564 Eucalyptus grandis HOM05D002139 ORTHO05D002264 8.3e-10 66.2 40 75.0
Sp3g10010 Schrenkiella parvula HOM05D002139 ORTHO05D002264 8.3e-10 66.2 43 67.4
AL6G16570 Arabidopsis lyrata HOM05D002139 ORTHO05D002264 1.1e-09 65.9 50 62.0
Ciclev10013007m.g Citrus clementina HOM05D002139 ORTHO05D002264 1.1e-09 65.9 51 64.7
Lalb_Chr02g0154331 Lupinus albus HOM05D002139 ORTHO05D002264 1.1e-09 65.9 50 56.0
Atru.chr8.1316 Acer truncatum HOM05D002139 ORTHO05D002264 1.4e-09 65.5 50 62.0
Ca_11675_v3 Cicer arietinum L. HOM05D002139 ORTHO05D002264 1.4e-09 65.5 51 62.7
Duzib093G2229 Durio zibethinus HOM05D002139 ORTHO05D002264 1.8e-09 65.1 50 60.0
Medtr1g055435 Medicago truncatula HOM05D002139 ORTHO05D002264 1.8e-09 65.1 43 62.8
BcaB04g18660 Brassica carinata HOM05D002139 ORTHO05D002264 2.4e-09 64.7 43 65.1
BcaC01g04086 Brassica carinata HOM05D002139 ORTHO05D002264 2.4e-09 64.7 43 65.1
A03p37280 Brassica napus HOM05D002139 ORTHO05D002264 2.4e-09 64.7 50 58.0
Psat6g126240 Pisum sativum HOM05D002139 ORTHO05D002264 2.4e-09 64.7 43 62.8
MSTRG.19337 Avicennia marina HOM05D002139 ORTHO05D002264 3.1e-09 64.3 50 56.0
BolC1t05288H Brassica oleracea HOM05D002139 ORTHO05D002264 3.1e-09 64.3 43 65.1
BraA01t04159Z Brassica rapa HOM05D002139 ORTHO05D002264 3.1e-09 64.3 43 65.1
Carub.0003s1112 Capsella rubella HOM05D002139 ORTHO05D002264 3.1e-09 64.3 50 60.0
Lj5g0006018 Lotus japonicus HOM05D002139 ORTHO05D002264 3.1e-09 64.3 43 62.8
Gohir.A04G055400 Gossypium hirsutum HOM05D002139 ORTHO05D002264 4.1e-09 63.9 50 58.0
Gohir.D04G092600 Gossypium hirsutum HOM05D002139 ORTHO05D002264 4.1e-09 63.9 50 58.0
Gorai.009G394500 Gossypium raimondii HOM05D002139 ORTHO05D002264 4.1e-09 63.9 50 58.0
THA.LOC104816636 Tarenaya hassleriana HOM05D002139 ORTHO05D002264 4.1e-09 63.9 40 70.0
Migut.J00746 Erythranthe guttata HOM05D002139 ORTHO05D002264 5.4e-09 63.5 50 58.0
Medtr1g055425 Medicago truncatula HOM05D002139 ORTHO05D002264 5.4e-09 63.5 43 65.1
PGR004G2773 Punica granatum HOM05D002139 ORTHO05D002264 5.4e-09 63.5 50 60.0
BcaC09g48193 Brassica carinata HOM05D002139 ORTHO05D002264 7.0e-09 63.2 43 65.1
Glyma.02G193900 Glycine max HOM05D002139 ORTHO05D002264 7.0e-09 63.2 50 60.0
Actinidia07945 Actinidia chinensis HOM05D002139 ORTHO05D000747 9.1e-09 62.8 50 56.0
Lalb_Chr06g0172701 Lupinus albus HOM05D002139 ORTHO05D002264 9.1e-09 62.8 50 56.0
Manes.08G035400 Manihot esculenta HOM05D002139 ORTHO05D002264 9.1e-09 62.8 50 60.0
AT5G06480 Arabidopsis thaliana HOM05D002139 ORTHO05D002264 1.2e-08 62.4 40 67.5
CSS0025933 Camellia sinensis var. sinensis HOM05D002139 ORTHO05D002264 1.2e-08 62.4 50 56.0
CSS0027061 Camellia sinensis var. sinensis HOM05D002139 ORTHO05D002264 1.2e-08 62.4 50 56.0
CARHR206710 Cardamine hirsuta HOM05D002139 ORTHO05D002264 1.6e-08 62.0 50 58.0
BcaC06g32571 Brassica carinata HOM05D002139 ORTHO05D002264 2.0e-08 61.6 36 72.2
A10p29920 Brassica napus HOM05D002139 ORTHO05D002264 2.0e-08 61.6 36 72.2
C09p70330 Brassica napus HOM05D002139 ORTHO05D002264 2.0e-08 61.6 36 72.2
Thhalv10016064m.g Eutrema salsugineum HOM05D002139 ORTHO05D002264 2.0e-08 61.6 36 72.2
Potri.016G067800 Populus trichocarpa HOM05D002139 ORTHO05D002264 3.5e-08 60.8 40 67.5
Sabra16G0068800 Salix brachista HOM05D002139 ORTHO05D002264 3.5e-08 60.8 40 67.5
BcaC05g29330 Brassica carinata HOM05D002139 ORTHO05D002264 4.5e-08 60.5 43 65.1
BcaC05g29331 Brassica carinata HOM05D002139 ORTHO05D002264 4.5e-08 60.5 43 65.1
C05p56120 Brassica napus HOM05D002139 ORTHO05D002264 4.5e-08 60.5 43 65.1
Oeu003849.1 Olea europaea HOM05D002139 ORTHO05D002264 4.5e-08 60.5 50 52.0
Oeu003851.1 Olea europaea HOM05D000279 ORTHO05D000957 4.5e-08 60.5 50 52.0
Lj1A437T6 Lonicera japonica HOM05D002139 ORTHO05D002264 5.9e-08 60.1 50 54.0
unitig_578.g15803 Utricularia gibba HOM05D002139 ORTHO05D002264 5.9e-08 60.1 50 54.0
C03p45140 Brassica napus HOM05D002139 ORTHO05D002264 7.7e-08 59.7 50 58.0
Dinv31779 Davidia involucrata HOM05D002139 ORTHO05D002264 7.7e-08 59.7 50 52.0
Actinidia06185 Actinidia chinensis HOM05D002139 ORTHO05D002264 1.0e-07 59.3 50 56.0
MBI05_g18604_MAGBIO Magnolia biondii HOM05D002139 ORTHO05D002264 1.0e-07 59.3 40 60.0
Oeu020192.1 Olea europaea HOM05D002139 ORTHO05D002264 1.0e-07 59.3 50 54.0
Peaxi162Scf00675g00028 Petunia axillaris HOM05D002139 ORTHO05D002264 1.0e-07 59.3 40 60.0
A05p37560 Brassica napus HOM05D002139 ORTHO05D002264 1.3e-07 58.9 43 62.8
CSS0038542 Camellia sinensis var. sinensis HOM05D002139 ORTHO05D002264 1.3e-07 58.9 50 54.0
Dinv12355 Davidia involucrata HOM05D002139 ORTHO05D002264 1.3e-07 58.9 43 55.8
Nitab4.5_0000473g0030 Nicotiana tabacum HOM05D002139 ORTHO05D002264 1.3e-07 58.9 40 60.0
Potri.006G201400 Populus trichocarpa HOM05D002139 ORTHO05D002264 1.3e-07 58.9 40 60.0
Actinidia37762 Actinidia chinensis HOM05D002139 ORTHO05D002264 1.7e-07 58.5 50 56.0
BraA03t12888Z Brassica rapa HOM05D002139 ORTHO05D002264 1.7e-07 58.5 55 52.7
Nn6g34623 Nelumbo nucifera HOM05D002139 ORTHO05D002264 1.7e-07 58.5 50 54.0
Nitab4.5_0000220g0050 Nicotiana tabacum HOM05D002139 ORTHO05D002264 1.7e-07 58.5 40 57.5
CSS0028191 Camellia sinensis var. sinensis HOM05D002139 ORTHO05D002264 2.2e-07 58.2 50 52.0
CANSAT64G0105 Cannabis sativa HOM05D002139 ORTHO05D002264 2.2e-07 58.2 50 50.0
CANSAT64G2342 Cannabis sativa HOM05D002139 ORTHO05D002264 2.2e-07 58.2 50 50.0
Solyc01g006900.3 Solanum lycopersicum HOM05D002139 ORTHO05D002264 2.2e-07 58.2 40 57.5
Solyc10g081810.3 Solanum lycopersicum HOM05D002139 ORTHO05D002264 2.2e-07 58.2 40 60.0
Sopen01g002890 Solanum pennellii HOM05D002139 ORTHO05D002264 2.2e-07 58.2 40 57.5
PGSC0003DMG401021334 Solanum tuberosum HOM05D002139 ORTHO05D002264 2.2e-07 58.2 40 57.5
CAN.G674.12 Capsicum annuum HOM05D002139 ORTHO05D002264 2.9e-07 57.8 40 57.5
SGA_v2.0_scaffold112G31677 Striga asiatica HOM05D002139 ORTHO05D002264 2.9e-07 57.8 39 61.5
TAR369G0016 Trochodendron aralioides HOM05D002139 ORTHO05D002264 2.9e-07 57.8 50 50.0
GSVIVG01036048001 Vitis vinifera HOM05D002139 ORTHO05D002264 2.9e-07 57.8 50 56.0
Dinv33550 Davidia involucrata HOM05D002139 ORTHO05D002264 3.8e-07 57.4 50 52.0
Sc07g0006390 Simmondsia chinensis HOM05D002139 ORTHO05D002264 3.8e-07 57.4 50 52.0
PGSC0003DMG401028141 Solanum tuberosum HOM05D002139 ORTHO05D002264 3.8e-07 57.4 40 55.0
TAR633G0116 Trochodendron aralioides HOM05D002139 ORTHO05D002264 3.8e-07 57.4 39 59.0
AUR62030707 Chenopodium quinoa HOM05D002139 ORTHO05D002264 5.0e-07 57.0 43 53.5
Hma1.2p1_0064F.1_g034550 Hydrangea macrophylla HOM05D002139 ORTHO05D002264 5.0e-07 57.0 50 50.0
GSVIVG01022566001 Vitis vinifera HOM05D002139 ORTHO05D002264 5.0e-07 57.0 43 53.5
BcaB04g21116 Brassica carinata HOM05D002139 ORTHO05D002264 6.5e-07 56.6 43 58.1
Carub.0006s0536 Capsella rubella HOM05D002139 ORTHO05D002264 6.5e-07 56.6 40 65.0
CAN.G911.36 Capsicum annuum HOM05D002139 ORTHO05D002264 6.5e-07 56.6 40 55.0
HanXRQChr13g0398591 Helianthus annuus HOM05D002139 ORTHO05D002264 6.5e-07 56.6 50 50.0
Nn2g14365 Nelumbo nucifera HOM05D002139 ORTHO05D002264 6.5e-07 56.6 50 50.0
Sp6g36380 Schrenkiella parvula HOM05D002139 ORTHO05D002264 6.5e-07 56.6 36 66.7
TAR636G2481 Trochodendron aralioides HOM05D002139 ORTHO05D002264 6.5e-07 56.6 50 54.0
Cc06_g06770 Coffea canephora HOM05D002139 ORTHO05D002264 8.5e-07 56.2 40 60.0
Oeu045012.1 Olea europaea HOM05D002139 ORTHO05D002264 8.5e-07 56.2 50 52.0
Solyc10g081800.2 Solanum lycopersicum HOM05D002139 ORTHO05D002264 8.5e-07 56.2 40 55.0
Sopen10g032320 Solanum pennellii HOM05D002139 ORTHO05D002264 8.5e-07 56.2 40 55.0
Sopen10g032330 Solanum pennellii HOM05D002139 ORTHO05D002264 1.1e-06 55.8 40 57.5
ECA233G6108 Erigeron canadensis HOM05D002139 ORTHO05D002264 1.9e-06 55.1 40 55.0
Rhsim01G0068700 Rhododendron simsii HOM05D002139 ORTHO05D002264 1.9e-06 55.1 51 52.9
HanXRQChr02g0053301 Helianthus annuus HOM05D002139 ORTHO05D002264 2.5e-06 54.7 40 55.0
PSO339G3407 Papaver somniferum HOM05D002139 ORTHO05D002264 2.5e-06 54.7 40 55.0
Rhsim13G0197700 Rhododendron simsii HOM05D002139 ORTHO05D002264 2.5e-06 54.7 50 46.0
PSO384G1674 Papaver somniferum HOM05D002139 ORTHO05D002264 3.2e-06 54.3 40 57.5
Peaxi162Scf00083g02016 Petunia axillaris HOM05D002139 ORTHO05D002264 3.2e-06 54.3 40 55.0
Sc24g0002480 Simmondsia chinensis HOM05D002139 ORTHO05D002264 3.2e-06 54.3 50 50.0
MBI11_g04609_MAGBIO Magnolia biondii HOM05D002139 ORTHO05D002264 4.2e-06 53.9 50 48.0
PGSC0003DMG402028141 Solanum tuberosum HOM05D002139 ORTHO05D002264 4.2e-06 53.9 40 55.0
Actinidia03869 Actinidia chinensis HOM05D002139 ORTHO05D002264 5.5e-06 53.5 51 51.0
BcaC03g13167 Brassica carinata HOM05D002139 ORTHO05D002264 5.5e-06 53.5 37 59.5
C02p02710 Brassica napus HOM05D002139 ORTHO05D002264 5.5e-06 53.5 37 59.5
BolC2t06235H Brassica oleracea HOM05D002139 ORTHO05D002264 5.5e-06 53.5 37 59.5
BolC3t16778H Brassica oleracea HOM05D002139 ORTHO05D002264 5.5e-06 53.5 55 52.7
SGA_v2.0_scaffold31G12810 Striga asiatica HOM05D002139 ORTHO05D002264 5.5e-06 53.5 40 55.0
Actinidia07288 Actinidia chinensis HOM05D002139 ORTHO05D002264 7.2e-06 53.1 50 46.0
Actinidia37507 Actinidia chinensis HOM05D002139 ORTHO05D002264 7.2e-06 53.1 50 46.0
Ciclev10029501m.g Citrus clementina HOM05D002139 ORTHO05D002264 7.2e-06 53.1 40 52.5
TWI79G1050 Tripterygium wilfordii HOM05D002139 ORTHO05D002264 7.2e-06 53.1 39 51.3
Actinidia07291 Actinidia chinensis HOM05D000011 ORTHO05D002639 9.5e-06 52.8 50 46.0
BcaB05g21669 Brassica carinata HOM05D002139 ORTHO05D002264 9.5e-06 52.8 36 63.9
BraA10t45031Z Brassica rapa HOM05D002139 ORTHO05D002264 9.5e-06 52.8 48 54.2


User provided reference genes

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