Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 9.9e-305 1049.3 521 100.0
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 7.7e-249 863.6 529 83.2
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 2.9e-248 861.7 526 83.3
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.8e-245 852.4 527 82.7
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 9.8e-244 846.7 539 80.5
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 6.2e-222 774.2 477 82.4
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 3.1e-213 745.3 535 70.3
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 7.6e-172 607.8 541 58.6
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 4.2e-170 602.1 392 77.0
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 3.0e-168 595.9 557 56.9
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 3.9e-168 595.5 545 56.7
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 4.1e-165 585.5 538 57.4
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 1.3e-163 580.5 532 57.9
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 1.1e-159 567.4 523 55.6
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 1.4e-154 550.4 540 55.6
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 2.0e-151 540.0 539 53.6
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 2.6e-148 529.6 542 53.7
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 7.7e-148 528.1 543 52.3
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 1.1e-146 524.2 532 53.2
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 1.9e-146 523.5 542 51.5
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 5.5e-146 521.9 502 52.8
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 7.2e-146 521.5 532 52.3
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 9.4e-146 521.2 544 51.7
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 3.6e-145 519.2 540 49.8
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 6.1e-145 518.5 550 51.8
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 5.2e-144 515.4 598 48.8
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 2.0e-143 513.5 544 49.8
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 4.4e-143 512.3 532 50.8
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 6.3e-142 508.4 414 60.1
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 3.1e-141 506.1 530 52.1
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 3.8e-139 499.2 529 51.0
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 4.2e-138 495.7 553 48.3
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 7.2e-138 495.0 524 50.8
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 1.8e-136 490.3 533 50.5
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 4.0e-136 489.2 529 50.5
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 1.2e-135 487.6 529 50.3
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 1.2e-135 487.6 532 49.8
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 2.0e-135 486.9 524 50.4
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 4.4e-135 485.7 532 48.1
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 5.7e-135 485.3 526 51.1
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 5.7e-135 485.3 470 54.3
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 2.2e-134 483.4 540 49.4
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 3.7e-134 482.6 529 49.7
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 8.3e-134 481.5 539 48.6
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 8.3e-134 481.5 596 45.5
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 1.8e-133 480.3 529 49.7
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 3.1e-133 479.6 529 49.3
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 4.1e-133 479.2 547 47.7
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 7.0e-133 478.4 525 49.0
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 9.1e-133 478.0 542 47.8
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 2.7e-132 476.5 527 50.5
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 1.5e-130 470.7 443 54.9
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 5.5e-130 468.8 539 48.1
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 4.0e-128 462.6 530 46.8
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 2.0e-127 460.3 489 50.9
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 2.6e-127 459.9 387 58.1
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 2.9e-123 446.4 522 46.2
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 3.3e-122 443.0 572 44.4
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 4.7e-121 439.1 611 42.1
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 2.3e-120 436.8 520 46.0
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 7.5e-119 431.8 490 50.0
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 1.7e-118 430.6 496 48.0
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 4.9e-118 429.1 517 46.2
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 8.3e-118 428.3 517 45.5
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 1.4e-117 427.6 537 47.5
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 8.6e-115 418.3 474 47.9
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 8.6e-115 418.3 540 45.0
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 1.5e-114 417.5 358 56.4
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 3.3e-114 416.4 574 44.8
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 4.3e-114 416.0 421 50.8
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 9.8e-111 404.8 564 44.0
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.7e-110 404.1 390 53.3
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 2.2e-110 403.7 378 54.5
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 1.1e-109 401.4 440 48.9
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 2.4e-109 400.2 467 47.8
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 4.1e-109 399.4 575 42.4
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 4.1e-109 399.4 695 36.8
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 1.2e-108 397.9 474 46.6
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 1.0e-107 394.8 432 48.4
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 3.1e-104 383.3 427 48.0
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 1.2e-103 381.3 376 54.3
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 2.9e-102 376.7 439 47.4
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 1.1e-101 374.8 554 39.7
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 3.2e-101 373.2 407 49.9
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 5.4e-101 372.5 385 50.6
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 6.0e-100 369.0 420 47.6
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 1.7e-99 367.5 419 47.7
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 2.8e-97 360.1 386 48.7
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 1.2e-95 354.8 502 43.2
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 1.7e-94 350.9 394 48.2
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 2.6e-87 327.0 380 46.3
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 2.6e-87 327.0 383 46.7
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 9.6e-82 308.5 279 54.5
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 7.1e-69 265.8 308 45.8
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 2.1e-68 264.2 335 43.0
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 1.9e-61 241.1 232 52.6
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 3.3e-58 230.3 229 53.7
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 4.3e-58 229.9 525 32.4
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 2.1e-57 227.6 495 31.7
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 2.3e-51 207.6 275 45.5
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 1.1e-37 162.2 231 41.1
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 3.3e-34 150.6 211 42.7
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 2.2e-33 147.9 370 29.7
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 2.2e-25 121.3 176 41.5
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 2.9e-22 110.9 220 30.9
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 4.2e-21 107.1 211 30.3
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 8.3e-17 92.8 152 36.8
Aqoxy4G01848 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 4.2e-13 80.5 89 47.2
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 6.1e-12 76.6 144 40.3
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.5e-10 72.0 115 39.1
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.5e-10 72.0 127 37.8
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 7.5e-10 69.7 83 43.4
HPP92_007178 Vanilla planifolia HOM05D006967 ORTHO05D008692 8.3e-09 66.2 97 36.1


User provided reference genes

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