Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 7.4e-59 230.3 116 100.0
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 9.7e-27 123.6 65 93.8
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 2.2e-26 122.5 65 92.3
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 2.8e-26 122.1 65 92.3
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.8e-26 122.1 65 92.3
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.8e-26 122.1 65 92.3
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 1.7e-23 112.8 65 83.1
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.5e-22 109.8 58 94.8
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 1.9e-22 109.4 65 80.0
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 1.9e-22 109.4 63 82.5
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 6.8e-20 100.9 57 89.5
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 1.2e-19 100.1 56 89.3
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 1.3e-18 96.7 65 70.8
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 6.3e-18 94.4 72 63.9
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 4.1e-17 91.7 66 69.7
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 1.2e-16 90.1 65 67.7
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 1.6e-16 89.7 65 69.2
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 1.6e-16 89.7 62 67.7
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 2.0e-16 89.4 65 67.7
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 3.5e-16 88.6 65 66.2
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 7.7e-16 87.4 65 66.2
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 7.7e-16 87.4 65 60.0
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 1.0e-15 87.0 66 69.7
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 1.0e-15 87.0 65 67.7
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 1.3e-15 86.7 65 63.1
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 1.7e-15 86.3 65 64.6
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 2.2e-15 85.9 65 61.5
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 2.2e-15 85.9 65 63.1
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 2.9e-15 85.5 61 70.5
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 2.9e-15 85.5 65 61.5
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 3.8e-15 85.1 65 64.6
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 3.8e-15 85.1 65 64.6
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 3.8e-15 85.1 65 63.1
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 5.0e-15 84.7 65 63.1
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 6.5e-15 84.3 65 63.1
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 6.5e-15 84.3 65 63.1
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 6.5e-15 84.3 65 56.9
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 1.1e-14 83.6 65 63.1
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 1.1e-14 83.6 65 61.5
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 1.5e-14 83.2 65 63.1
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 1.9e-14 82.8 65 60.0
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 1.9e-14 82.8 65 61.5
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 1.9e-14 82.8 65 61.5
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 1.9e-14 82.8 67 61.2
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 2.5e-14 82.4 65 61.5
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 4.2e-14 81.6 65 60.0
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 4.2e-14 81.6 65 60.0
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 4.2e-14 81.6 65 63.1
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 5.5e-14 81.3 65 60.0
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 5.5e-14 81.3 68 60.3
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 5.5e-14 81.3 88 48.9
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 7.2e-14 80.9 73 57.5
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 7.2e-14 80.9 61 65.6
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 7.2e-14 80.9 65 61.5
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 7.2e-14 80.9 65 60.0
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 7.2e-14 80.9 62 62.9
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 9.4e-14 80.5 62 62.9
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 9.4e-14 80.5 65 60.0
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 9.4e-14 80.5 62 62.9
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 1.2e-13 80.1 60 61.7
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 1.2e-13 80.1 63 60.3
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 1.2e-13 80.1 66 57.6
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 2.1e-13 79.3 68 55.9
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.7e-13 79.0 88 44.3
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 2.7e-13 79.0 65 60.0
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 4.7e-13 78.2 68 55.9
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 4.7e-13 78.2 66 60.6
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 4.7e-13 78.2 65 56.9
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 4.7e-13 78.2 65 60.0
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 6.1e-13 77.8 65 58.5
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 8.0e-13 77.4 65 61.5
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 8.0e-13 77.4 68 55.9
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 8.0e-13 77.4 68 54.4
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 8.0e-13 77.4 62 59.7
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 1.0e-12 77.0 58 62.1
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.4e-12 76.6 62 61.3
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 1.4e-12 76.6 58 62.1
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 1.4e-12 76.6 66 54.5
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 2.3e-12 75.9 76 57.9
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 4.0e-12 75.1 65 56.9
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 5.2e-12 74.7 65 55.4
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 6.8e-12 74.3 58 60.3
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 8.8e-12 73.9 52 67.3
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 1.2e-11 73.6 58 60.3
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 1.2e-11 73.6 58 60.3
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 1.2e-11 73.6 58 60.3
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 1.5e-11 73.2 58 58.6
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.5e-11 73.2 65 55.4
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.5e-11 73.2 65 55.4
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 2.6e-11 72.4 66 60.6
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 2.6e-11 72.4 65 55.4
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 2.6e-11 72.4 65 55.4
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.4e-11 72.0 57 61.4
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 3.4e-11 72.0 65 58.5
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 1.3e-10 70.1 63 58.7
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 3.7e-10 68.6 60 56.7
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 4.8e-10 68.2 56 62.5
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 6.3e-10 67.8 55 58.2
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 8.3e-10 67.4 76 47.4
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 1.4e-09 66.6 56 62.5
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 2.4e-09 65.9 55 58.2
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 3.1e-09 65.5 55 58.2
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 4.1e-09 65.1 56 55.4
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 1.6e-08 63.2 38 76.3
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 4.5e-08 61.6 60 51.7
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 1.0e-07 60.5 67 46.3
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 6.6e-07 57.8 70 48.6
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 1.5e-06 56.6 57 57.9
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 3.3e-06 55.5 45 60.0
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 9.5e-06 53.9 39 66.7


User provided reference genes

Program Settings