Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0020151 Rosa chinensis HOM05D006866 ORTHO05D008689 4.2e-129 466.1 227 100.0
FvH4_3g12360 Fragaria vesca HOM05D006866 ORTHO05D008689 3.0e-103 380.2 194 93.8
FAN21G0631 Fragaria x ananassa HOM05D006866 ORTHO05D008689 1.2e-102 378.3 193 94.8
FAN25G0624 Fragaria x ananassa HOM05D006866 ORTHO05D008689 2.0e-99 367.5 200 90.5
Prupe.4G112600 Prunus persica HOM05D006866 ORTHO05D008689 3.2e-84 317.0 195 80.0
MD10G1231700 Malus domestica HOM05D006866 ORTHO05D008689 1.7e-77 294.7 175 80.6
CANSAT35G0964 Cannabis sativa HOM05D006866 ORTHO05D008689 1.1e-76 292.0 195 74.9
CiPaw.10G064300 Carya illinoinensis HOM05D006866 ORTHO05D008689 1.2e-75 288.5 200 69.5
TWI38G1826 Tripterygium wilfordii HOM05D006866 ORTHO05D008689 5.6e-73 279.6 194 68.6
GSVIVG01012065001 Vitis vinifera HOM05D006866 ORTHO05D008689 2.1e-72 277.7 208 65.9
Cfa000706 Carpinus fangiana HOM05D006866 ORTHO05D008689 6.8e-71 272.7 185 70.8
Haze_06061 Corylus avellana HOM05D006866 ORTHO05D008689 8.9e-71 272.3 193 68.9
Gorai.011G048600 Gossypium raimondii HOM05D006866 ORTHO05D008689 4.4e-70 270.0 207 61.4
Actinidia22399 Actinidia chinensis HOM05D006866 ORTHO05D008689 4.9e-69 266.5 194 67.0
CSS0001165 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 7.1e-68 262.7 201 64.7
Dinv01379 Davidia involucrata HOM05D006866 ORTHO05D008689 1.2e-67 261.9 172 73.3
Duzib160G0228 Durio zibethinus HOM05D006866 ORTHO05D008689 4.6e-67 260.0 188 64.9
CsaV3_1G046260 Cucumis sativus L. HOM05D006866 ORTHO05D008689 3.9e-66 256.9 194 61.3
Oeu060351.1 Olea europaea HOM05D006866 ORTHO05D008689 6.6e-66 256.1 197 61.9
Potri.012G123600 Populus trichocarpa HOM05D006866 ORTHO05D008689 1.1e-65 255.4 194 62.9
CSS0037136 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.9e-65 254.6 193 65.8
Glyma.20G109800 Glycine max HOM05D006866 ORTHO05D008689 7.3e-65 252.7 194 63.4
Thecc.06G143300 Theobroma cacao HOM05D006866 ORTHO05D008689 9.6e-65 252.3 194 62.9
TAR626G0654 Trochodendron aralioides HOM05D006866 ORTHO05D008689 9.6e-65 252.3 177 66.1
Sopen02g017930 Solanum pennellii HOM05D006866 ORTHO05D008689 2.1e-64 251.1 196 62.2
VMungo0720G0148 Vigna mungo HOM05D006866 ORTHO05D008689 2.8e-64 250.8 187 63.6
HanXRQChr09g0258331 Helianthus annuus HOM05D006866 ORTHO05D008689 4.7e-64 250.0 223 56.1
Gohir.A10G044500 Gossypium hirsutum HOM05D006866 ORTHO05D008689 6.2e-64 249.6 169 68.0
CAN.G149.30 Capsicum annuum HOM05D006866 ORTHO05D008689 8.1e-64 249.2 187 64.7
Ca_25672_v3 Cicer arietinum L. HOM05D006866 ORTHO05D008689 8.1e-64 249.2 194 61.3
ClCG01G009530 Citrullus lanatus HOM05D006866 ORTHO05D008689 1.1e-63 248.8 226 54.0
Lalb_Chr02g0143291 Lupinus albus HOM05D006866 ORTHO05D008689 1.1e-63 248.8 201 60.2
Peaxi162Scf00149g00318 Petunia axillaris HOM05D006866 ORTHO05D008689 1.1e-63 248.8 187 64.7
COL.COLO4_30996 Corchorus olitorius HOM05D006866 ORTHO05D008689 1.4e-63 248.4 197 59.4
Sabra12G0093800 Salix brachista HOM05D006866 ORTHO05D008689 1.4e-63 248.4 200 58.5
EL10Ac4g09707 Beta vulgaris HOM05D006866 ORTHO05D008689 1.8e-63 248.1 184 62.0
PGSC0003DMG400010422 Solanum tuberosum HOM05D006866 ORTHO05D008689 1.8e-63 248.1 194 62.9
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 2.4e-63 247.7 193 63.2
Gohir.D10G045700 Gossypium hirsutum HOM05D006866 ORTHO05D008689 4.0e-63 246.9 169 66.9
Nitab4.5_0001288g0160 Nicotiana tabacum HOM05D006866 ORTHO05D008689 4.0e-63 246.9 202 61.9
AUR62006933 Chenopodium quinoa HOM05D006866 ORTHO05D008689 5.2e-63 246.5 187 59.9
MELO3C021744.2 Cucumis melo HOM05D006866 ORTHO05D008689 5.2e-63 246.5 194 59.8
Solyc02g068760.4 Solanum lycopersicum HOM05D006866 ORTHO05D008689 5.2e-63 246.5 187 63.6
arahy.Tifrunner.gnm1.ann1.X32MFV Arachis hypogaea HOM05D006866 ORTHO05D008689 6.9e-63 246.1 171 67.8
Lj5g0008795 Lotus japonicus HOM05D006866 ORTHO05D008689 2.0e-62 244.6 187 62.6
QL11p016582 Quercus lobata HOM05D006866 ORTHO05D008689 4.4e-62 243.4 229 54.6
Sed0016966 Sechium edule HOM05D006866 ORTHO05D003855 4.4e-62 243.4 179 64.2
AUR62006935 Chenopodium quinoa HOM05D006866 ORTHO05D008689 5.8e-62 243.0 184 59.2
ECA232G0121 Erigeron canadensis HOM05D006866 ORTHO05D008689 1.3e-61 241.9 206 56.3
Cc09_g06040 Coffea canephora HOM05D006866 ORTHO05D008689 1.7e-61 241.5 194 59.8
Sabra12G0093100 Salix brachista HOM05D006866 ORTHO05D008689 2.2e-61 241.1 152 69.7
Nn7g38175 Nelumbo nucifera HOM05D006866 ORTHO05D008689 2.9e-61 240.7 197 57.9
A05p10610 Brassica napus HOM05D006866 ORTHO05D008689 8.4e-61 239.2 201 57.7
BolC4t22960H Brassica oleracea HOM05D006866 ORTHO05D008689 1.1e-60 238.8 210 56.7
TPR.G2424 Trifolium pratense HOM05D006866 ORTHO05D008689 1.1e-60 238.8 187 61.5
Medtr1g112240 Medicago truncatula HOM05D006866 ORTHO05D008689 1.4e-60 238.4 171 66.1
Psat6g231320 Pisum sativum HOM05D006866 ORTHO05D008689 1.4e-60 238.4 194 59.3
Migut.M01983 Erythranthe guttata HOM05D006866 ORTHO05D008689 1.9e-60 238.0 197 58.4
BcaB02g09476 Brassica carinata HOM05D006866 ORTHO05D008689 2.4e-60 237.7 210 56.2
Eucgr.D00981 Eucalyptus grandis HOM05D006866 ORTHO05D008689 2.4e-60 237.7 172 64.5
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 2.4e-60 237.7 171 66.7
BraA05t20001Z Brassica rapa HOM05D006866 ORTHO05D008689 3.2e-60 237.3 193 59.1
C04p13710 Brassica napus HOM05D006866 ORTHO05D008689 5.4e-60 236.5 193 59.1
MBI18_g11481_MAGBIO Magnolia biondii HOM05D006866 ORTHO05D008689 2.1e-59 234.6 197 59.4
AL4G31140 Arabidopsis lyrata HOM05D006866 ORTHO05D008689 3.5e-59 233.8 194 58.2
DCAR_001319 Daucus carota HOM05D006866 ORTHO05D008689 4.6e-59 233.4 159 66.7
Thhalv10017758m.g Eutrema salsugineum HOM05D006866 ORTHO05D008689 4.6e-59 233.4 155 67.7
Carub.0004s1681 Capsella rubella HOM05D006866 ORTHO05D008689 7.8e-59 232.6 155 67.1
Aa31LG9G16090 Aethionema arabicum HOM05D006866 ORTHO05D008689 1.0e-58 232.3 155 68.4
Sp4g17360 Schrenkiella parvula HOM05D006866 ORTHO05D008689 1.0e-58 232.3 155 67.7
AT2G35130 Arabidopsis thaliana HOM05D006866 ORTHO05D008689 1.3e-58 231.9 204 56.9
Aqoxy1G01457 Aquilegia oxysepala HOM05D006866 ORTHO05D008689 1.7e-58 231.5 210 53.8
vmacro03523 Vaccinium macrocarpon HOM05D006866 ORTHO05D008689 2.5e-57 227.6 221 54.8
THA.LOC104814359 Tarenaya hassleriana HOM05D006866 ORTHO05D008689 4.8e-56 223.4 188 57.4
TPR.G2448 Trifolium pratense HOM05D006866 ORTHO05D008689 1.1e-55 222.2 216 52.3
PSO675G2302 Papaver somniferum HOM05D006866 ORTHO05D008689 2.0e-54 218.0 161 60.9
PSO541G3299 Papaver somniferum HOM05D006866 ORTHO05D008689 5.8e-54 216.5 161 60.9
EL10Ac8g19312 Beta vulgaris HOM05D006866 ORTHO05D008689 1.3e-53 215.3 184 56.0
ATR0763G194 Amborella trichopoda HOM05D006866 ORTHO05D008689 2.2e-53 214.5 153 64.1
Nitab4.5_0007533g0010 Nicotiana tabacum HOM05D006866 ORTHO05D008689 3.8e-53 213.8 157 67.5
CARHR129270 Cardamine hirsuta HOM05D006866 ORTHO05D008689 6.4e-53 213.0 136 69.9
Zm00001eb233080 Zea mays HOM05D006866 ORTHO05D008689 9.3e-52 209.1 153 60.8
CDE01G0264 Ceratophyllum demersum HOM05D006866 ORTHO05D008689 1.6e-51 208.4 191 55.5
Cpa.g.sc135.7 Carica papaya HOM05D006866 ORTHO05D008689 3.0e-50 204.1 129 72.9
Lsat_1_v5_gn_8_117320 Lactuca sativa HOM05D006866 ORTHO05D008689 6.7e-50 203.0 134 68.7
Sabra12G0093000 Salix brachista HOM05D000009 ORTHO05D000008 4.8e-48 196.8 194 52.6
arahy.Tifrunner.gnm1.ann1.0F554D Arachis hypogaea HOM05D006866 ORTHO05D008689 3.1e-47 194.1 171 57.3
AUR62000579 Chenopodium quinoa HOM05D006866 ORTHO05D008689 1.2e-43 182.2 184 51.6
Lj2A350T60 Lonicera japonica HOM05D006866 ORTHO05D008689 1.6e-40 171.8 209 47.8
PGR004G0545 Punica granatum HOM05D006866 ORTHO05D008689 1.8e-39 168.3 161 50.9
HanXRQChr10g0279011 Helianthus annuus HOM05D006866 ORTHO05D008689 2.1e-35 154.8 140 54.3
Os02g0170000 Oryza sativa ssp. japonica HOM05D006866 ORTHO05D008689 7.7e-30 136.3 102 59.8
Lsat_1_v5_gn_6_52341 Lactuca sativa HOM05D006866 ORTHO05D008689 1.3e-29 135.6 112 58.9
Manes.13G080558 Manihot esculenta HOM05D006866 ORTHO05D008689 9.4e-28 129.4 75 76.0
Sabra12G0092900 Salix brachista HOM05D000009 ORTHO05D000008 3.0e-26 124.4 130 48.5
SMO165G0132 Selaginella moellendorffii HOM05D006866 ORTHO05D008689 1.9e-20 105.1 130 36.2
AagrBONN_evm.TU.Sc2ySwM_368.1444 Anthoceros agrestis HOM05D006866 ORTHO05D008689 2.1e-19 101.7 128 37.5
Pp3c6_26210 Physcomitrium patens HOM05D006866 ORTHO05D008689 2.6e-17 94.7 139 35.3
Mapoly0002s0014 Marchantia polymorpha HOM05D006866 ORTHO05D008689 3.3e-17 94.4 136 33.8
RhsimUnG0235100 Rhododendron simsii HOM05D006866 ORTHO05D008689 3.3e-17 94.4 54 75.9
CSS0019706 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 4.4e-17 94.0 53 75.5
Pp3c16_5890 Physcomitrium patens HOM05D006866 ORTHO05D008689 9.7e-17 92.8 179 32.4
CAN.G27.8 Capsicum annuum HOM05D006866 ORTHO05D008689 8.2e-16 89.7 70 58.6
MD05G1251100 Malus domestica HOM05D006866 ORTHO05D008689 3.8e-13 80.9 48 83.3
Ciclev10015335m.g Citrus clementina HOM05D006866 ORTHO05D008689 8.5e-13 79.7 47 72.3
CSS0001056 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 3.2e-12 77.8 46 73.9
CSS0048441 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 3.2e-12 77.8 46 73.9
Lsat_1_v5_gn_3_50301 Lactuca sativa HOM05D006866 ORTHO05D008689 4.2e-12 77.4 53 62.3
EL10Ac8g19311 Beta vulgaris HOM05D006866 ORTHO05D008689 6.1e-11 73.6 44 72.7
Lsat_1_v5_gn_8_128381 Lactuca sativa HOM05D006866 ORTHO05D008689 8.0e-11 73.2 121 38.0
Cfa008015 Carpinus fangiana HOM05D000082 ORTHO05D008689 4.4e-09 67.4 124 40.3
Haze_06053 Corylus avellana HOM05D006866 ORTHO05D008689 5.7e-09 67.0 186 32.3
Lj5g0020884 Lotus japonicus HOM05D000132 ORTHO05D000058 1.3e-08 65.9 38 78.9
CAN.G1114.2 Capsicum annuum HOM05D006866 ORTHO05D008689 1.7e-08 65.5 41 68.3
Haze_06062 Corylus avellana HOM05D006866 ORTHO05D008689 3.7e-08 64.3 42 66.7
CARHR141110 Cardamine hirsuta HOM05D006866 ORTHO05D008689 1.4e-07 62.4 49 55.1
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 3.5e-06 57.8 66 43.9
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 3.5e-06 57.8 66 43.9


User provided reference genes

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