Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0017851 Rosa chinensis HOM05D001630 ORTHO05D346395 1.9e-26 121.7 60 100.0
Prupe.1G329900 Prunus persica HOM05D001630 ORTHO05D002505 1.2e-07 59.3 43 60.5
RcHm_v2.0_Chr4g0443601 Rosa chinensis HOM05D001630 ORTHO05D002505 1.2e-07 59.3 44 65.9
QL03p033886 Quercus lobata HOM05D001630 ORTHO05D002505 2.6e-07 58.2 36 69.4
Sabra10G0080800 Salix brachista HOM05D001630 ORTHO05D002505 5.8e-07 57.0 36 66.7
GSVIVG01011708001 Vitis vinifera HOM05D001630 ORTHO05D002505 5.8e-07 57.0 36 69.4
Dinv18614 Davidia involucrata HOM05D001630 ORTHO05D002505 7.6e-07 56.6 43 58.1
Dinv26230 Davidia involucrata HOM05D001630 ORTHO05D002505 7.6e-07 56.6 43 58.1
MD16G1023000 Malus domestica HOM05D001630 ORTHO05D002505 7.6e-07 56.6 44 54.5
Potri.010G110500 Populus trichocarpa HOM05D001630 ORTHO05D002505 7.6e-07 56.6 36 66.7
MD13G1022000 Malus domestica HOM05D001630 ORTHO05D002505 9.9e-07 56.2 43 55.8
FvH4_4g34080 Fragaria vesca HOM05D001630 ORTHO05D002505 1.3e-06 55.8 44 56.8
FAN12G0350 Fragaria x ananassa HOM05D001630 ORTHO05D002505 1.3e-06 55.8 44 56.8
FAN17G2556 Fragaria x ananassa HOM05D001630 ORTHO05D002505 1.3e-06 55.8 44 56.8
FAN22G0549 Fragaria x ananassa HOM05D001630 ORTHO05D002505 1.3e-06 55.8 44 56.8
Potri.008G131800 Populus trichocarpa HOM05D001630 ORTHO05D002505 1.3e-06 55.8 43 55.8
MSTRG.2151 Avicennia marina HOM05D001630 ORTHO05D002505 1.7e-06 55.5 36 63.9
Hma1.2p1_0330F.1_g127380 Hydrangea macrophylla HOM05D001630 ORTHO05D002505 1.7e-06 55.5 36 63.9
Sabra08G0100600 Salix brachista HOM05D001630 ORTHO05D002505 1.7e-06 55.5 43 55.8
CANSAT01G1495 Cannabis sativa HOM05D001630 ORTHO05D002505 2.2e-06 55.1 43 55.8
TWI77G0817 Tripterygium wilfordii HOM05D001630 ORTHO05D002505 2.2e-06 55.1 44 52.3
BraA02t06740Z Brassica rapa HOM05D001630 ORTHO05D002505 2.9e-06 54.7 38 63.2
Phvul.002G183300 Phaseolus vulgaris HOM05D001630 ORTHO05D002505 2.9e-06 54.7 35 65.7
SGA_v2.0_scaffold50G18479 Striga asiatica HOM05D001630 ORTHO05D002505 2.9e-06 54.7 36 63.9
Ca_11593_v3 Cicer arietinum L. HOM05D001630 ORTHO05D002505 3.7e-06 54.3 36 63.9
Hma1.2p1_0346F.1_g131550 Hydrangea macrophylla HOM05D001630 ORTHO05D002505 3.7e-06 54.3 36 63.9
Lalb_Chr00c06g0404611 Lupinus albus HOM05D001630 ORTHO05D002505 3.7e-06 54.3 36 66.7
Lalb_Chr13g0293721 Lupinus albus HOM05D001630 ORTHO05D002505 3.7e-06 54.3 36 66.7
Manes.17G080400 Manihot esculenta HOM05D001630 ORTHO05D002505 3.7e-06 54.3 36 66.7
SGA_v2.0_scaffold234G43657 Striga asiatica HOM05D001630 ORTHO05D002505 3.7e-06 54.3 37 59.5
TAR622G0558 Trochodendron aralioides HOM05D001630 ORTHO05D002505 3.7e-06 54.3 43 55.8
Aqoxy3G00053 Aquilegia oxysepala HOM05D001630 ORTHO05D002505 4.9e-06 53.9 43 55.8
Cpa.g.sc116.51 Carica papaya HOM05D001630 ORTHO05D002505 4.9e-06 53.9 44 50.0
Dinv28043 Davidia involucrata HOM05D001630 ORTHO05D002505 4.9e-06 53.9 43 55.8
Lj6A742T65 Lonicera japonica HOM05D001630 ORTHO05D002505 4.9e-06 53.9 43 53.5
TWI74G1681 Tripterygium wilfordii HOM05D001630 ORTHO05D002505 4.9e-06 53.9 36 63.9
TAR371G0200 Trochodendron aralioides HOM05D001630 ORTHO05D010465 4.9e-06 53.9 40 57.5
arahy.Tifrunner.gnm1.ann1.6GC407 Arachis hypogaea HOM05D001630 ORTHO05D002505 6.4e-06 53.5 38 60.5
arahy.Tifrunner.gnm1.ann1.XRPJ7L Arachis hypogaea HOM05D001630 ORTHO05D002505 6.4e-06 53.5 38 60.5
EL10Ac6g14195 Beta vulgaris HOM05D001630 ORTHO05D002505 6.4e-06 53.5 36 63.9
CiPaw.05G193800 Carya illinoinensis HOM05D001630 ORTHO05D002505 6.4e-06 53.5 43 53.5
Glyma.14G215700 Glycine max HOM05D001630 ORTHO05D002505 6.4e-06 53.5 44 52.3
PGR042G2918 Punica granatum HOM05D001630 ORTHO05D002505 6.4e-06 53.5 36 66.7
THA.LOC104823001 Tarenaya hassleriana HOM05D001630 ORTHO05D002505 6.4e-06 53.5 43 58.1
TWI53G0025 Tripterygium wilfordii HOM05D001630 ORTHO05D002505 6.4e-06 53.5 44 50.0
unitig_62.g23738 Utricularia gibba HOM05D001630 ORTHO05D002505 6.4e-06 53.5 36 61.1
VMungo0251G1445 Vigna mungo HOM05D001630 ORTHO05D002505 6.4e-06 53.5 43 53.5
BcaB05g24611 Brassica carinata HOM05D001630 ORTHO05D002505 8.4e-06 53.1 43 55.8
Ciclev10014686m.g Citrus clementina HOM05D001630 ORTHO05D002505 8.4e-06 53.1 36 58.3
Migut.L00397 Erythranthe guttata HOM05D001630 ORTHO05D002505 8.4e-06 53.1 44 50.0
Glyma.02G245500 Glycine max HOM05D001630 ORTHO05D002505 8.4e-06 53.1 44 52.3
Glyma.05G139900 Glycine max HOM05D001630 ORTHO05D002505 8.4e-06 53.1 35 62.9
Glyma.08G095200 Glycine max HOM05D001630 ORTHO05D002505 8.4e-06 53.1 35 62.9
LjContig00141g0001694 Lotus japonicus HOM05D001630 ORTHO05D002505 8.4e-06 53.1 43 55.8
Lalb_Chr12g0206771 Lupinus albus HOM05D001630 ORTHO05D002505 8.4e-06 53.1 36 61.1
Nn4g24249 Nelumbo nucifera HOM05D001630 ORTHO05D002505 8.4e-06 53.1 43 53.5
Thecc.04G116400 Theobroma cacao HOM05D001630 ORTHO05D002505 8.4e-06 53.1 44 50.0
TWI53G1931 Tripterygium wilfordii HOM05D001630 ORTHO05D002505 8.4e-06 53.1 36 61.1
VMungo0647G0260 Vigna mungo HOM05D001630 ORTHO05D002505 8.4e-06 53.1 44 52.3


User provided reference genes

Program Settings