Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 3.4e-72 275.0 153 100.0
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 1.4e-09 67.0 55 65.5
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 1.9e-09 66.6 41 80.5
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 2.4e-09 66.2 41 78.0
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 4.1e-09 65.5 42 73.8
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 4.1e-09 65.5 41 75.6
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 5.4e-09 65.1 41 78.0
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 5.4e-09 65.1 41 75.6
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 5.4e-09 65.1 41 78.0
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 5.4e-09 65.1 41 75.6
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 7.1e-09 64.7 71 49.3
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 7.1e-09 64.7 71 49.3
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 7.1e-09 64.7 71 49.3
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 7.1e-09 64.7 71 49.3
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 7.1e-09 64.7 41 73.2
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 9.2e-09 64.3 41 75.6
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 9.2e-09 64.3 41 75.6
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 1.2e-08 63.9 49 61.2
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 1.2e-08 63.9 49 61.2
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 1.2e-08 63.9 49 61.2
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 1.2e-08 63.9 41 75.6
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 1.6e-08 63.5 41 73.2
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 1.6e-08 63.5 41 75.6
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 1.6e-08 63.5 41 75.6
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 1.6e-08 63.5 50 60.0
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 2.1e-08 63.2 41 70.7
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 2.1e-08 63.2 49 61.2
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 2.1e-08 63.2 41 73.2
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 2.1e-08 63.2 41 75.6
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 2.1e-08 63.2 49 61.2
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 2.1e-08 63.2 41 75.6
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 2.7e-08 62.8 41 75.6
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.7e-08 62.8 41 75.6
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.7e-08 62.8 41 75.6
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 2.7e-08 62.8 41 75.6
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 2.7e-08 62.8 41 73.2
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 3.5e-08 62.4 41 70.7
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 4.6e-08 62.0 41 70.7
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 4.6e-08 62.0 57 57.9
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 4.6e-08 62.0 57 57.9
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 4.6e-08 62.0 41 70.7
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 4.6e-08 62.0 41 70.7
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 4.6e-08 62.0 41 73.2
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 6.0e-08 61.6 49 61.2
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 6.0e-08 61.6 41 70.7
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 6.0e-08 61.6 41 70.7
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 7.8e-08 61.2 41 75.6
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 7.8e-08 61.2 41 70.7
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 7.8e-08 61.2 41 68.3
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 1.0e-07 60.8 41 73.2
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 1.0e-07 60.8 41 70.7
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.0e-07 60.8 40 70.0
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 1.0e-07 60.8 41 70.7
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 1.3e-07 60.5 49 59.2
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 1.3e-07 60.5 41 68.3
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 1.3e-07 60.5 41 65.9
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 1.3e-07 60.5 41 68.3
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 1.3e-07 60.5 41 68.3
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 1.3e-07 60.5 41 73.2
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.3e-07 60.5 41 70.7
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 1.7e-07 60.1 38 73.7
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 1.7e-07 60.1 41 68.3
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 1.7e-07 60.1 40 70.0
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 1.7e-07 60.1 41 68.3
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 1.7e-07 60.1 41 70.7
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 1.7e-07 60.1 41 70.7
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 2.3e-07 59.7 49 63.3
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 2.3e-07 59.7 49 57.1
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 2.3e-07 59.7 41 65.9
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 2.3e-07 59.7 41 65.9
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 2.3e-07 59.7 41 73.2
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 3.0e-07 59.3 57 56.1
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 3.0e-07 59.3 41 70.7
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 3.0e-07 59.3 49 59.2
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 3.9e-07 58.9 56 53.6
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 6.6e-07 58.2 41 65.9
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 6.6e-07 58.2 41 65.9
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 6.6e-07 58.2 41 65.9
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 8.6e-07 57.8 38 71.1
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 8.6e-07 57.8 73 47.9
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 8.6e-07 57.8 41 68.3
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 1.9e-06 56.6 38 68.4
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 2.5e-06 56.2 49 57.1
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 3.3e-06 55.8 44 61.4
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 3.3e-06 55.8 38 68.4
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 4.3e-06 55.5 48 52.1
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 4.3e-06 55.5 37 67.6
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 7.3e-06 54.7 41 58.5
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 7.3e-06 54.7 49 55.1


User provided reference genes

Program Settings