Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 6.6e-90 334.0 161 100.0
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 2.2e-32 142.9 70 94.3
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 6.5e-21 104.8 58 89.7
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 6.5e-21 104.8 58 89.7
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 6.5e-21 104.8 58 89.7
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 6.5e-21 104.8 58 89.7
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 6.5e-21 104.8 58 89.7
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 1.4e-20 103.6 57 89.5
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 1.4e-20 103.6 58 87.9
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 1.4e-20 103.6 58 87.9
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 3.2e-20 102.4 58 86.2
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 4.2e-20 102.1 57 87.7
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 4.2e-20 102.1 57 87.7
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 7.2e-20 101.3 56 89.3
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 1.2e-19 100.5 57 86.0
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 1.2e-19 100.5 57 86.0
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 1.6e-19 100.1 57 86.0
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 1.6e-19 100.1 57 84.2
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 1.6e-19 100.1 57 86.0
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 1.6e-19 100.1 57 86.0
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 2.1e-19 99.8 57 86.0
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 2.1e-19 99.8 57 86.0
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.1e-19 99.8 57 84.2
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 3.6e-19 99.0 57 84.2
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 3.6e-19 99.0 57 84.2
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 3.6e-19 99.0 57 84.2
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 4.7e-19 98.6 57 86.0
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 4.7e-19 98.6 57 89.5
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 6.1e-19 98.2 56 87.5
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 6.1e-19 98.2 57 84.2
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 6.1e-19 98.2 56 87.5
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 6.1e-19 98.2 57 84.2
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 7.9e-19 97.8 57 84.2
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 7.9e-19 97.8 57 84.2
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 7.9e-19 97.8 57 84.2
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 7.9e-19 97.8 57 84.2
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 7.9e-19 97.8 57 84.2
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.0e-18 97.4 57 84.2
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 1.4e-18 97.1 57 80.7
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 1.4e-18 97.1 57 80.7
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 1.8e-18 96.7 57 82.5
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 1.8e-18 96.7 56 85.7
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 1.8e-18 96.7 56 85.7
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 1.8e-18 96.7 57 82.5
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 2.3e-18 96.3 57 84.2
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 2.3e-18 96.3 68 72.1
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 2.3e-18 96.3 57 82.5
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 3.0e-18 95.9 57 80.7
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 3.0e-18 95.9 57 82.5
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 3.0e-18 95.9 56 85.7
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 3.9e-18 95.5 56 83.9
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 3.9e-18 95.5 57 82.5
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 5.1e-18 95.1 57 78.9
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 5.1e-18 95.1 57 80.7
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 5.1e-18 95.1 57 80.7
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 6.7e-18 94.7 57 78.9
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 6.7e-18 94.7 57 78.9
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 6.7e-18 94.7 56 83.9
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 8.8e-18 94.4 57 78.9
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 1.5e-17 93.6 57 77.2
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 1.5e-17 93.6 57 78.9
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 2.0e-17 93.2 57 77.2
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 2.0e-17 93.2 57 78.9
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 3.3e-17 92.4 57 75.4
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 4.4e-17 92.0 57 77.2
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 5.7e-17 91.7 57 77.2
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 5.7e-17 91.7 57 77.2
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 7.4e-17 91.3 56 78.6
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 7.4e-17 91.3 56 78.6
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 7.4e-17 91.3 56 78.6
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 7.4e-17 91.3 57 75.4
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 1.3e-16 90.5 57 75.4
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 1.3e-16 90.5 57 75.4
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.7e-16 90.1 57 75.4
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 1.7e-16 90.1 57 75.4
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 1.7e-16 90.1 57 75.4
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 1.7e-16 90.1 55 80.0
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 2.8e-16 89.4 56 76.8
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 2.8e-16 89.4 57 78.9
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 2.8e-16 89.4 57 78.9
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 2.8e-16 89.4 77 61.0
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 3.7e-16 89.0 56 76.8
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 3.7e-16 89.0 56 76.8
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 3.7e-16 89.0 56 76.8
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 3.7e-16 89.0 56 76.8
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 3.7e-16 89.0 56 76.8
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 1.1e-15 87.4 68 64.7
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 1.4e-15 87.0 57 73.7
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 7.7e-14 81.3 64 65.6
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.3e-13 80.5 58 65.5
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 2.5e-12 76.3 57 66.7
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 9.4e-12 74.3 43 79.1
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.4e-10 70.5 57 54.4
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 1.8e-10 70.1 40 82.5
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-10 68.9 55 65.5
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-10 68.9 55 65.5
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 2.6e-09 66.2 57 57.9
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 2.6e-09 66.2 57 54.4
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 4.4e-09 65.5 74 45.9
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 5.7e-09 65.1 101 42.6
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 5.7e-09 65.1 68 47.1
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 1.8e-07 60.1 60 51.7
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 1.8e-07 60.1 133 32.3
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 1.8e-07 60.1 65 49.2
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 1.6e-06 57.0 40 67.5
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 4.5e-06 55.5 40 65.0
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 5.9e-06 55.1 40 60.0


User provided reference genes

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